LOC110520012 (cssa21h2orf88)


Basic Information

Item Value
gene id LOC110520012
gene name cssa21h2orf88
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45099333 ~ 45104286 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002472923.2
TACAGTTTACTAACTGCCTTCAGAACGTTGAGTCAAACAGGCAACACTTTCAACGATGATTTATGTAGAATCTCCAGTAGAATGATGGCAAGAAGAAGGTATAGTCCTCCATGTCCGACTATTCCAGGATGTGAGAGTTTAATTAAATCGATGTTTGTATTTAGTGGGATTACTGCACAATGTGGTATGGTGGAACATTGAATGTCCAGTTTGGTAACTTGGTGGAAATTTCGTGCTGAGAGAGAAACCTGACCAACGTGGTCGCTGCCTTCCAAGTTTCATGTTCAAGCCTTGGACGCATATTCGGCGGTTTGATAAGGAGACGGAGTAGACACAGTCCGAGAGGCGGCACGTTTGGTGATTTCGGTTCACAAACCGTGTGGATGTATGAGACTTCTTTATTGAAACGTGTCGTTCAAGATAAAACGATGCGTTTTCCTACGGGATGAATTTGATATTCATGGAGGGAAACGCATCCAGTCCTACTTTTCCAAGAGTCTTTTTGAAGGCAGGACTGAGGCAACACACACCAGGACAGATGGAGACTACAGCAAATAACAGCAGTGCTTTGTGCGTTCAACCCAGGGTCACGTGGTCTATTTATGAAGACTGAAAAGACTGAGGATACAAAACAACAAGATCATGGcaCAGGGGAAGATATAAGTAGGGCAGCATAGGAGCATGGCTGACTGTCTGGACTATTTCAGGGCAGCTCAGTTAAGACAAGAATCGGCTTCCTAGCCGTCGCTTCTTAACCAGGGGCCAAGCCCCCCTCCGGCACATTCCTCCTTCaccaccttctctctcccctcctctctgagATCAATGCTCCATGATTTATATAATGGGATGCGTCAAATCCAAGAAGAGCGATCCGATCCAGTACGCCAACTCGGTGAAGGCGGACGGCAATCCTGGGAAGTGGCAGGGCGAGAACGCGCTGCTGGTCCACTATGAGACGGGGTCCGTGGACGACTCTGCCCGGGTGGACCCCATTCTGCTGGAGTATGCCCAGCGGCTGTCCGAGGAGATAGTGGCCCGGGCCGTGCAGCAGTGGTTGGAGGTGGACAGCCGCTACATTGACATCCCCTACATTGAGTGTGATGTGCCAtgagggggatggggggagggcaTTGCCAGAGAGTGTTATTTCTGTTATGGGATTCACCTTGAACCTCTGGGGAAAAGAAGACTACTGGATGcccaacaaacagacagacagacagacagacatcactcTCCTTCAGGTTGAAACAATACACTACGAAGATCTACTAGCTGATGCAAGATGTTGATGCCATTCTATGGTCCAAAGCCATTTTTCTGTTTAATTCATACTTGGACAAAGACCTTGATTAATCCTCTCATTTTCAATCCAGACCATGTGCTTGTCTCCATCGTTAGCTAGATGATAAGAGTTCCGAGCTGGGGTGTGTGATATCTTTGTCTTGGGAGCCGATAAAGCAGAAGAGTATCATTGAATCCTGCTTTGAAAATGACCGGTTCTGCCCTTCAGTGAATATCTATCGTTTCCGCTTGACGCGTGCCATCCTTGCGGCCAAATAGCAGTTCCGATGTAGGAAGTTATTTATTAGCACCTCAAATGGCCAATGTTTTTCACTTGAGATTTTTTGCTAGAGTCAGCAGGTACAtgcctccctctccatctgtctgcccAGACAGAAGTTCCCAGTTCAGGGTTCTTGGATAATGGCATCCCAGGGGGCCTGTGGTCGACCAACAAAGGAGAGCTCATTATTCATCCTGCCCAACTACCCATTAAGCATGTACGACGACGAGCTGCAGCAACCAAGGACCTGACAACGGTCACTTTGACGAAATGATGCTCTACGAACATGGCCGTGGGAAGATGTTTTGGGTTGGGGGTGCTGATGAGTATTTTTGTCCACTCATATAGGAGTAATAAAGGCCAAGTTCACTAAGGATGTTTTTTTCGAtttatcagggggtgctgcagcaccctcagcatccctacttcctgcggctatgtTTAGGAATGTTTTACAGAGGTTCAGCACCCTCCCATTCTATGAATTTGAATGCCATTGACAATAGGACATCCCTGAGGGCTGGCTAAGTCCCCCATGCCTCGAGGAAATCAGGACACGAGGATGGATTGACACACTTTTACTGAGACTTGGCTTTTGTACACAAAACGAGTTCTGGGTTCACAAATACATTTTGCTTTCGCCAAAATGTCTTGGGCCAAGCACCCTGGTAATGAGGAACTGCTGCCATCCGCCCCATAGAATTTACAGCACAAATATGCAACTCTCCAAGGCCATGGTATTTTTATTGAGAGCAAATGGCTTCTTAAAATAGTACGATGCTATTTTAACAGGCCATAGGCACACATAAGCACAATGGagagttgagttgtttggaaaaGGAGAACAACTGTCAAAGTCCTTAATGAATGGTAGTACAAGCACAATACGCTTGATGGGTTTTCGTATGGCGTTTATAAGAGAGGTCATATCAGTGGGTTTTAGTCAGTCATGGCAGGTCAGTTCCTACCATACCACAACTGATGTTCAAGAAGCTTTAAATGGCGGATGAGTCAAGGCTGGGCAACATGGAACATTTCACAGAGCATTAAATCAGAGTGCCATTGTATACACACCACAAAGAACAAGTAGACATTATTTCACCGGCTAAGGAAGTTTGACCTGTGCATCTCAAGTAAGATTCGGCTGCTAAGTCATTAGGTATGCTCAGTAAAGGAAATGGTAGTGGTGTGCCTCAAATGCTACACCCAAAAATCCATTACAGTTAAAAGCAACAAATATATAACAGCATTTTCACTAATCTGGGTTGAAAGATGAATCTCTTGAACCCATTCAATTATGTAAACCAATTGAAAAGCTTAGCGGTGACAACTTCCCCCCCCCATACTGTATTCCTAAATCTAAGAACTGGACAGATCACAGATCACTGTTGTTACTGCCTCAGCTAATGTTTTAAACAATTTTACAGATCAAGCTGCAAAAAACACAATGaaatcaaacaaaaaaaaaatccatcaaGCTTGATTTTCACTCGGATGAATTGGTTGATACAAGTCGTTTTACTATGCAGGAGACGGCTAGCACTGCATGCCATATATCAAGCCCCTATCATTATCTCTGCCTTTTATTTTTtgcatctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaacgacagaattgtaccttgtcagctcagggatttgaacttgcaacctttcggttactagtccaacgctctaagcactaggctaccctgccgccccaagctACCCTGCCTTTGAAGCCATGTCGAACACAGAATTCAAATGCTTTGTATAATGATGGTCAATGTCGCAGTTCACAATGCTTACAGCTTGACATAAACAGGTATACCAGGTATACCAAAGTATGTACAAACGAGGTATACCTGGATTCCTTCCTTCTAAATATTTCAATGTCGGGAACAGTTACATCTTGTAACATCAGTCTTCCAGTCAAGCCTTCAGTTTGATtatgggcaaaaaaaaaaaagtatgttggGAGATCCTAATGCTTCTTTTCCCCCCAGCGTCTAAGGACTCATCTATATTTATATCATATACCATTTAACCTGCAGCACTGTACAGGTCTGTAAATAAATCAATGACAAAAAAATGTGACGACAATAAAGCTGAAATCTATGCCTTCTACCATTA
>TU299078
AACGTTGAGTCAAACAGGCAACACTTTCAACGATGATTTATGTAGAATCTCCAGTAGAATGATGGCAAGAAGAAGGTATAGTCCTCCATGTCCGACTATTCCAGGATGTGAGAGTTTAATTAAATCGATGTTTGTATTTAGTGGGATTACTGCACAATGTGGTATGGTGGAACATTGAATGTCCAGTTTGGTAACTTGGTGGAAATTTCGTGCTGAGAGAGAAACCTGACCAACGTGGTCGCTGCCTTCCAAGTTTCATGTTCAAGCCTTGGACGCATATTCGGCGGTTTGATAAGGAGACGGAGTAGACACAGTCCGAGAGGCGGCACGTTTGGTGATTTCGGTTCACAAACCGTGTGGATGTATGAGACTTCTTTATTGAAACGTGTCGTTCAAGATAAAACGATGCGTTTTCCTACGGGATGAATTTGATATTCATGGAGGGAAACGCATCCAGTCCTACTTTTCCAAGAGTCTTTTTGAAGcaCAGGGGAAGATATAAGTAGGGCAGCATAGGAGCATGGCTGACTGTCTGGACTATTTCAGGGCAGCTCAGTTAAGACAAGAATCGGCTTCCTAGCCGTCGCTTCTTAACCAGGGGCCAAGCCCCCCTCCGGCACATTCCTCCTTCaccaccttctctctcccctcctctctgagATCAATGCTCCATGATTTATATAATGGGATGCGTCAAATCCAAGAAGAGCGATCCGATCCAGTACGCCAACTCGGTGAAGGCGGACGGCAATCCTGGGAAGTGGCAGGGCGAGAACGCGCTGCTGGTCCACTATGAGACGGGGTCCGTGGACGACTCTGCCCGGGTGGACCCCATTCTGCTGGAGTATGCCCAGCGGCTGTCCGAGGAGATAGTGGCCCGGGCCGTGCAGCAGTGGTTGGAGGTGGACAGCCGCTACATTGACATCCCCTACATTGAGTGTGATGTGCCAtgagggggatggggggagggcaTTGCCAGAGAGTGTTATTTCTGTTATGGGATTCACCTTGAACCTCTGGGGAAAAGAAGACTACTGGATGcccaacaaacagacagacagacagacagacatcactcTCCTTCAGGTTGAAACAATACACTACGAAGATCTACTAGCTGATGCAAGATGTTGATGCCATTCTATGGTCCAAAGCCATTTTTCTGTTTAATTCATACTTGGACAAAGACCTTGATTAATCCTCTCATTTTCAATCCAGACCATGTGCTTGTCTCCATCGTTAGCTAGATGATAAGAGTTCCGAGCTGGGGTGTGTGATATCTTTGTCTTGGGAGCCGATAAAGCAGAAGAGTATCATTGAATCCTGCTTTGAAAATGACCGTGACGCGTGCCATCCTTGCGGCCAAATAGCAGTTCCGATGTAGGAAGTTATTTATTAGCACCTCAAATGGCCAATGTTTTTCACTTGAGATTTTTTGCTAGAGTCAGCAGGTACAtgcctccctctccatctgtctgcccAGACAGAAGTTCCCAGTTCAGGGTTCTTGGATAATGGCATCCCAGGGGGCCTGTGGTCGACCAACAAAGGAGAGCTCATTATTCATCCTGCCCAACTACCCATTAAGCATGTACGACGACGAGCTGCAGCAACCAAGGACCTGACAACGGTCACTTTGACGAAATGATGCTCTACGAACATGGCCGTGGGAAGATGTTTTGGGTTGGGGGTGCTGATGAGTATTTTTGTCCACTCATATAGGAGTAATAAAGGCCAAGTTCACTAAGGATGTTTTTTTCGAtttatcagggggtgctgcagcaccctcagcatccctacttcctgcggctatgtTTAGGAATGTTTTACAGAGGTTCAGCACCCTCCCATTCTATGAATTTGAATGCCATTGACAATAGGACATCCCTGAGGGCTGGCTAAGTCCCCCATGCCTCGAGGAAATCAGGACACGAGGATGGATTGACACACTTTTACTGAGACTTGGCTTTTGTACACAAAACGAGTTCTGGGTTCACAAATACATTTTGCTTTCGCCAAAATGTCTTGGGCCAAGCACCCTGGTAATGAGGAACTGCTGCCATCCGCCCCATAGAATTTACAGCACAAATATGCAACTCTCCAAGGCCATGGTATTTTTATTGAGAGCAAATGGCTTCTTAAAATAGTACGATGCTATTTTAACAGGCCATAGGCACACATAAGCACAATGGagagttgagttgtttggaaaaGGAGAACAACTGTCAAAGTCCTTAATGAATGGTAGTACAAGCACAATACGCTTGATGGGTTTTCGTATGGCGTTTATAAGAGAGGTCATATCAGTGGGTTTTAGTCAGTCATGGCAGGTCAGTTCCTACCATACCACAACTGATGTTCAAGAAGCTTTAAATGGCGGATGAGTCAAGGCTGGGCAACATGGAACATTTCACAGAGCATTAAATCAGAGTGCCATTGTATACACACCACAAAGAACAAGTAGACATTATTTCACCGGCTAAGGAAGTTTGACCTGTGCATCTCAAGTAAGATTCGGCTGCTAAGTCATTAGGTATGCTCAGTAAAGGAAATGGTAGTGGTGTGCCTCAAATGCTACACCCAAAAATCCATTACAGTTAAAAGCAACAAATATATAACAGCATTTTCACTAATCTGGGTTGAAAGATGAATCTCTTGAACCCATTCAATTATGTAAACCAATTGAAAAGCTTAGCGGTGACAACTTCCCCCCCCCATACTGTATTCCTAAATCTAAGAACTGGACAGATCACAGATCACTGTTGTTACTGCCTCAGCTAATGTTTTAAACAATTTTACAGATCAAGCTGCAAAAAACACAATGaaatcaaacaaaaaaaaaatccatcaaGCTTGATTTTCACTCGGATGAATTGGTTGATACAAGTCGTTTTACTATGCAGGAGACGGCTAGCACTGCATGCCATATATCAAGCCCCTATCATTATCTCTGCCTTTTATTTTTtgcatctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaacgacagaattgtaccttgtcagctcagggatttgaacttgcaacctttcggttactagtccaacgctctaagcactaggctaccctgccgccccaagctACCCTGCCTTTGAAGCCATGTCGAACACAGAATTCAAATGCTTTGTATAATGATGGTCAATGTCGCAGTTCACAATGCTTACAGCTTGACAAACGAGGTATACCTGGATTCCTTCCTTCTAAATATTTCAATGTCGGGAACAGTTACATCTTGTAACATCAGTCTTCCAGTCAAGCCTTCAGTTTGATtatgggcaaaaaaaaaaaagtatgttggGAGATCCTAATGCTTCTTTTCCCCCCAGCGTCTAAGGACTCATCTATATTTATATCATATACCATTTAACCTGCAGCACTGTACAGGTCTGTAAATAAATCAATGACAAAAAAATGTGACGACAATAAAGCTGAAATCTATGCCTTCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002472923.2 False 3763 mRNA 0.44 3 45099333 45104286
TU299078 True 3525 TUCP 0.45 4 45099340 45104263

Neighbor

gene id symbol gene type direction distance location
LOC110520009 LOC106586132 coding downstream 113079 44964412 ~ 44986254 (-)
LOC110520006 LOC106581857 coding downstream 141990 44941359 ~ 44957343 (-)
LOC110520007 NA coding downstream 151515 44944721 ~ 44947818 (-)
LOC118956426 NA coding downstream 159021 44938735 ~ 44940312 (-)
LOC110520004 LOC106586125 coding downstream 380855 44523710 ~ 44718478 (-)
LOC110504133 NA coding upstream 75078 45179364 ~ 45190120 (-)
LOC118956634 NA coding upstream 92791 45197003 ~ 45200662 (-)
LOC110520013 LOC106586136 coding upstream 106659 45210945 ~ 45212683 (-)
LOC110520016 asnsd1 coding upstream 123964 45228250 ~ 45235027 (-)
si:ch211-136m16.8 LOC106586138 coding upstream 132214 45236500 ~ 45243387 (-)
G263039 NA non-coding downstream 20496 45078521 ~ 45078837 (-)
G263012 NA non-coding downstream 58794 45040218 ~ 45040539 (-)
G263011 NA non-coding downstream 59805 45039251 ~ 45039528 (-)
G263006 NA non-coding downstream 64298 45034799 ~ 45035035 (-)
G262989 NA non-coding downstream 97789 45000542 ~ 45001544 (-)
G263110 NA non-coding upstream 94933 45199219 ~ 45199584 (-)
G263109 NA non-coding upstream 109459 45213745 ~ 45214224 (-)
G263120 NA non-coding upstream 117768 45222054 ~ 45222436 (-)
G263119 NA non-coding upstream 119786 45224072 ~ 45224612 (-)
G262993 NA other downstream 87084 45010172 ~ 45012249 (-)
G261580 NA other downstream 1067828 43989524 ~ 44031505 (-)
G259576 LOC106599288 other downstream 2771338 42285630 ~ 42327995 (-)
G259579 LOC106586070 other downstream 2779948 42290259 ~ 42319385 (-)
col6a3 LOC106598405 other downstream 2783975 42291728 ~ 42329627 (-)
G263274 NA other upstream 432046 45536332 ~ 45537542 (-)
G265988 NA other upstream 2494932 47599218 ~ 47599815 (-)
LOC110505248 gcg other upstream 2927761 48032036 ~ 48033434 (-)
G268310 NA other upstream 4391191 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 4398130 49494001 ~ 49503025 (-)

Expression


Co-expression Network