LOC110504133


Basic Information

Item Value
gene id LOC110504133
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45179364 ~ 45190120 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110504133
TCCATAAACAGTAGCTAATCATGAAACCGCTGCCTGCAGAAACTGTTCGCATTCTGTCCAACTGTGAGGTCATCACCTCTTTGGTAAACGTGGTGAAGGAACTGCTGGTGCTGGTGCCTTGAGAATTTacattaaaatgGGGAATTATGGTCTGGATCGAATAGAAATCATAGACAATGGCTCAGGCATAAAAGCTGCTGATACTGCTGTGATGGCTGTGAAATACTACCCCTCTAAAATCTGCAGCCACGATGGCCTGGAGCCCCTGGAGACATATGGCTTCAGAGGACAGGCCCAGGGCTCCATATGCGCTGTGGCAGAGGTAGCTGTCACGACAAAGACTGCCGAGGACGACGTCGGCACCCAGTACACGCTTGACCTCACGGGCAGGGTCGTTTCCCAGAAGCCCTCACCCAGGGCAAGGTACCACAGTCTGTGCACTGAAGCTTTTTTTAAGAATCTCCCAGTGAGGAAGCAGTATTGCGCCAACATGAATAagtgcaaggaggagcagaagAAGGTGCAGGACCTTCTCATGGCGTATGCCACTGTAAAACCAGAGCCGagactcacactcactcacagtaAGGTGGTGGTGTGGCAGAAGGCCAAGGTGTCCGATCACAGGATTGCTCTCATGGCTACGCTGGGGCCCAACGCTGTGGCCCACCTGCTTTTCAGTCCACCATCAACAAGAACAACCAGAGGTGGTCCGGCAGCACTACCTGGCTCAGTACCCGGCAGACTCTGCCTGCAGCCGTTATTCCACTATGATGCTCAACATCGCTGTTCCCGCATCCACTGTAGGCGTCAACCTGACCCCCCCCCAAGAAGACCCAGATTCTGCACCAGAACAAGGCCCTGGTTCGGGGTCTCCTGCTGAGGCTCCACCAGTCACTGGAGAAGATGCCTACAGTTGCCCATTATCACTGGGCAACTGTAGGGGAAACGCTGACGTAGAGGACAGTCTTATGGAGCACAGTGTCACGGTGGACAAAGCGCCATTTGGCTGCAGTGATGGCTCTCCATCCAGGGTAGTGGCTGCCGAGGCACGGCAGTCTGTCAAGGTCCACCTGCCCACCGGATGCAGCAGTGACCTGGGCCTGGTCCAGGCCAAGGATCAGAGCAGCCCTGGCAAAAAGGTGTCCAACGCTATAACGGAGAAACGTGCGTCACTGAAGGCCTACAACCTGATCAGTAGCCGTACCATGAGgaccccctgtccccctgtcccccgCTGCCTGTTTGAGAGGGAGACCCGGGCAGAGGTTCTCCAGGAGAAGCCCGCAGCAAGCCTCCAGGACATCACCTCTGCCGTGCAGGAGAGATGGAAAAACCTGGGGGAGGAGGACCGAAAGAAGTGA

Function

NR:

description
PREDICTED: PMS1 protein homolog 1 isoform X6

GO:

id name namespace
GO:0006298 mismatch repair biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0007131 reciprocal meiotic recombination biological_process
GO:0032389 MutLalpha complex cellular_component
GO:0032407 MutSalpha complex binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110504133 True 1364 mRNA 0.55 8 45179364 45190120

Neighbor

gene id symbol gene type direction distance location
LOC110520012 cssa21h2orf88 coding downstream 75078 45099333 ~ 45104286 (-)
LOC110520009 LOC106586132 coding downstream 193110 44964412 ~ 44986254 (-)
LOC110520006 LOC106581857 coding downstream 222021 44941359 ~ 44957343 (-)
LOC110520007 NA coding downstream 231546 44944721 ~ 44947818 (-)
LOC118956426 NA coding downstream 239052 44938735 ~ 44940312 (-)
LOC118956634 NA coding upstream 6957 45197003 ~ 45200662 (-)
LOC110520013 LOC106586136 coding upstream 20825 45210945 ~ 45212683 (-)
LOC110520016 asnsd1 coding upstream 38130 45228250 ~ 45235027 (-)
si:ch211-136m16.8 LOC106586138 coding upstream 46380 45236500 ~ 45243387 (-)
LOC110520019 LOC106586141 coding upstream 112285 45302405 ~ 45327280 (-)
G263039 NA non-coding downstream 100527 45078521 ~ 45078837 (-)
G263012 NA non-coding downstream 138825 45040218 ~ 45040539 (-)
G263011 NA non-coding downstream 139836 45039251 ~ 45039528 (-)
G263006 NA non-coding downstream 144329 45034799 ~ 45035035 (-)
G262989 NA non-coding downstream 177820 45000542 ~ 45001544 (-)
G263110 NA non-coding upstream 9099 45199219 ~ 45199584 (-)
G263109 NA non-coding upstream 23625 45213745 ~ 45214224 (-)
G263120 NA non-coding upstream 31934 45222054 ~ 45222436 (-)
G263119 NA non-coding upstream 33952 45224072 ~ 45224612 (-)
G262993 NA other downstream 167115 45010172 ~ 45012249 (-)
G261580 NA other downstream 1147859 43989524 ~ 44031505 (-)
G259576 LOC106599288 other downstream 2851369 42285630 ~ 42327995 (-)
G263274 NA other upstream 346212 45536332 ~ 45537542 (-)
G265988 NA other upstream 2409098 47599218 ~ 47599815 (-)
LOC110505248 gcg other upstream 2841927 48032036 ~ 48033434 (-)
G268310 NA other upstream 4305357 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 4312296 49494001 ~ 49503025 (-)

Expression


Co-expression Network