LOC118956634


Basic Information

Item Value
gene id LOC118956634
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45197003 ~ 45200662 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005046065.1
TTTTGGCAGAATGCCCAGAATATGTTCTAAGTTAAGATAGGAGACTGTGCCAGACACATGCAGGAACCAAACCTATGAACCAtgctgtcatgactgtcctgtgaggatccagATGTGTCGGATCAGCTTTGCAGTGGATGATTTCAACCAGACCCTCTCTCACCCAcagaagcgattacagccttgagtcttcttgtgtatgacgctacaagcttggcacaaatATATTTGGCGAGCTTCTttcattcttctttgcagatcctctcaagctctgtcaggttggggagcgtcactgcacagctattttcaggtctctccagagatgttagattgggttcaagtccgggttctagCTGGgttctcaaggacattcagagacttgtccagaagccattcctgcgttgtcttggctgtctacttagggtcgttgtactgttggaaggtgaaccttcaccccagtcggaggtcctgagtgctctggagcaggttttcatcaaggatctctctgtactttgctccattcatctttccctcgatcctaactcgTCTCCCATGCTTTTCTCAAGACCTCCTGCCCAAGATGCAGAAAACTCGATTAAGATGAAGAATTTTAGGAATGATTCAAATGTAACATAGTGAAAACTAAGTAcatatttattttctttcttccAGGACTGATGGAATGTCCACTACAAAGTTTTTTTTGACAAGTTTACCAATgattctctatctctccctttgaAAGGCTtcctgaggcagagagagaggcggacaattctacaaaataaattcacttttcaccagcgatcaagatgacacactgagcGATTGGCCCTCTGACTCCCTGACCCTGTAACTCTCGCCAAGATCtgGGACCACAGATGGTATCCAGATGCATGGAAGCGATAATTCGACCGAGAACAGTGAACCAAACCCCCTCTAACCGGCTGAAGTAATGGCAACAATGGCCTTCACTATGGCCCTGTCCACCACTTCTACATGAGTCCTGAGACTTTCCATGTGGAGTGAGCATAGAGAGAGAATGATTCCAAACTTCTCTCATGCTGCTGGTGTACTGGTCTGAAAATGTACAAGACATAATGAACCGTAAAGGATGGTAGCGGCTCAGGTGAGATTCGTCTGCTTGGAAAAATCTGATTATTCCCCAGATATTGAAATCCGGACATTATCAAGGGCCATCCACATTGAACATATTTTTGGGAGGACGAACTGTAAAAGCTATCTGAAGAAGAAAATTAAGAAACACTAGAAGAATGAGTGCCGTGAAGGAGGGGGCTGGTCAACCATGCCCGAAATTGATTTAGGCTTGTCCAAAATTCTTTATTTGGGGTATCAGATTGATTGTGGAGGTCTGCACACTGTGAAATGTATAGTAATTTAGactaagaatgcattgagataccaATCTGTCATTACCACAACTGGGGGCAGTGATGAAAAAAGTTCATGCTAGAAATATAAGAagatgaacatactgtatgtcaataTAAATGTACATTCTGCCAGTGTCGGTGTGTTCTAAGTTGAGGGTCTTAAATGGAACCAACGTGAAGCACTAAGTACTGTCATTCTAAATTTGGGTTGGATAAATTATCAATAGTTCTaattatgatttggaaaggtgagGCTTCTAGAGACAGAGCGATGCCCCTAAAATGTGAGTGTCACATTCTGAaattagttattttgttatgtcttagttttagtatggtcagggcgtgagttgggtgggttgtctatgttcgtttttctatgttgtgttttgagtttggcctgttatggttctcaatccgaggcaggtgtcgttagttgtctctgattgagaatcatacttaggtagcctttttccacctgtgttttgtgggtgtttattttctgttctatgtttgtatttcaccgttcaggactgttttcGTTGCGTTCtcgtgttttgttgtt
>TU299206
ATTCTGAaattagttattttgttatgtcttagttttagtatggtcagggcgtgagttgggtgggttgtctatgttcgtttttctatgttgtgttttgagtttggcctgttatggttctcaatccgaggcaggtgtcgttagttgtctctgattgagaatcatacttaggtagcctttttccacctgtgttttgtgggtgtttattttctgttctatgtttgtatttcaccgttcaggactgttttcGTTGCGTTCtcgtgttttgttgtttttgttcgagTATTCGTTTTCATTAAAAGAGaatatgaatacttaccacgctgaaccttggtcctcctctctat
>TU299211
ttccAGGACTGATGGAATGTCCACTACAAAGTTTTTTTTGACAAGTTTACCAATgattctctatctctccctttgaAAGGCTtcctgaggcagagagagaggcggacaattctacaaaataaattcacttttcaccagcgatcaagatgacacactgagcgtaaatatatatattgattgcaattgttgagtgagcgttcatgtgttaggattagcatttcaattgttatagtTATCACTTTGTAGtaacttcttagtcgaccccca
>TU299212
gagcgtcactgcacagctattttcaggtctctccagagatgttagattgggttcaagtccgggttctagCTGGgttctcaaggacattcagagacttgtccagaagccattcctgcgttgtcttggctgtctacttagggtcgttgtactgttggaaggtgaaccttcaccccagtcggaggtcctgagtgctctggagcaggttttcatcaaggatctctctgtactttgctccattcatctttccctcgatcctaactcgTCTCCCATGCTTTTCTCAAGACCTCCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005046065.1 False 1959 mRNA 0.43 3 45197077 45200662
TU299206 False 344 lncRNA 0.38 1 45197003 45197346
TU299211 False 267 lncRNA 0.38 1 45199730 45199996
TU299212 True 289 lncRNA 0.50 1 45200090 45200378

Neighbor

gene id symbol gene type direction distance location
LOC110504133 NA coding downstream 6957 45179364 ~ 45190120 (-)
LOC110520012 cssa21h2orf88 coding downstream 92791 45099333 ~ 45104286 (-)
LOC110520009 LOC106586132 coding downstream 210823 44964412 ~ 44986254 (-)
LOC110520006 LOC106581857 coding downstream 239734 44941359 ~ 44957343 (-)
LOC110520007 NA coding downstream 249259 44944721 ~ 44947818 (-)
LOC110520013 LOC106586136 coding upstream 10283 45210945 ~ 45212683 (-)
LOC110520016 asnsd1 coding upstream 27588 45228250 ~ 45235027 (-)
si:ch211-136m16.8 LOC106586138 coding upstream 35838 45236500 ~ 45243387 (-)
LOC110520019 LOC106586141 coding upstream 101743 45302405 ~ 45327280 (-)
LOC110520020 LOC106586142 coding upstream 199623 45400285 ~ 45432858 (-)
G263039 NA non-coding downstream 118240 45078521 ~ 45078837 (-)
G263012 NA non-coding downstream 156538 45040218 ~ 45040539 (-)
G263011 NA non-coding downstream 157549 45039251 ~ 45039528 (-)
G263006 NA non-coding downstream 162042 45034799 ~ 45035035 (-)
G262989 NA non-coding downstream 195533 45000542 ~ 45001544 (-)
G263109 NA non-coding upstream 13083 45213745 ~ 45214224 (-)
G263120 NA non-coding upstream 21392 45222054 ~ 45222436 (-)
G263119 NA non-coding upstream 23410 45224072 ~ 45224612 (-)
G263127 NA non-coding upstream 44088 45244750 ~ 45248820 (-)
G262993 NA other downstream 184828 45010172 ~ 45012249 (-)
G261580 NA other downstream 1165572 43989524 ~ 44031505 (-)
G259579 LOC106586070 other downstream 2877692 42290259 ~ 42319385 (-)
G263274 NA other upstream 335670 45536332 ~ 45537542 (-)
G265988 NA other upstream 2398556 47599218 ~ 47599815 (-)
LOC110505248 gcg other upstream 2831385 48032036 ~ 48033434 (-)
G268310 NA other upstream 4294815 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 4301754 49494001 ~ 49503025 (-)
G259576 LOC106599288 other downstream 2869008 42285630 ~ 42327995 (-)

Expression


Co-expression Network