LOC110520013 (LOC106586136)


Basic Information

Item Value
gene id LOC110520013
gene name LOC106586136
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45210945 ~ 45212683 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974223.1
AATATTAAGAAAATGTTAAAAGGTTTTTCCGATATCAAAGGGATTGTTTTAATTTAAAATCAGTGCATTTTATGAATCTAGGAATCAAATCTATGGGTGTCTATGAAGAGTGATAGCCTTTGTTTCAGGGGGATATTATATGCAGTCGGACATCAACAAGCATGGATGGAAACGGAGAGCTAGCTCCACGTATCTGAAATCTGTCACGTTTCACACTTCTAATCAAAGCTGGTCAACAAGGTCATTTTAATTAATCAATCGGTAATGTTAAGTATACACTGACAGTATTTTTTTTCGCATGCTCTGAAACAACATTACATCTCTGCGCCACTACATCCAATGTTTATCTTCTTGTAAACATTTGGTCTGTATCCGAGTTGTGTTTCATCCTGATTTTTAACAGAGGTGCTTTGAAATGGAGCCACAACCCAAACGCAGAAAAGAATATGAGTGTGACATCGACTCCTGGGTTGCTTACCCTGTGCTGTCCAACGAGCAGTCACAAGACATTGAGCTAATCGAGGCCTTTGCAGTTCCCATCATCAACAGGAAAGAAACCTCTCGTTTGATCAAGGAGTTGGCCAAAGTATACCCATTACCTGGACTTCAGCACATCAAGAGAGTACGGTCATGCAAGGATAAGGGCAGCCCTCACCCTCTGGAGGTCATTGTATGCCTTGCCAGTGATGCACCAGTCATTGACCGCAGTAAGGAGCTGCACATATCTGATCTGTCATCATCCGGTAGATTAAACTGTGAAGGTCTAGGATACCCTTTCCTGGTCAAGATACCAGCATGCCCTCCTTTGACCAGACCGCAGTTTGAGCAGGCCAGCAAACACTGGCCCACCTCCTTTCATGAGGACAAACAGGTGACTGTGGCCCTGAGGGGCCAGCTGTTTACCTCCTCTCAGAAATCAAAGATGCAGGAGTACATGATGGCTGCTGTGGCTGCAGCCAGAGCGGGACAGGAGAGTGGCATGAAGGCTGTGGGGGCTGCAGTCGTTGACCCAGAGGCAGAGAGGATCCTCGCTGTGGGACATGACTGCCAGCAAAGCGGTCACCCACTTCATCACGCCATCATGGTCTGCATTGACCTTGTGGCACGTGGGCAGGGGGGTGGGGCCTACACCTATGACAAGTACCCCGCCTGCCAGTCTGTTTTGCCCTATTCCTCACCCTCTCAAAAACAGGGTGCCACCAACATGACTACCTGTGGGGTCGTGCAGGAAGGGGACAGTGCAGAGAAGAGAGTTGAGCCATACATCTGCACCGGGTACGACCTGTATGTTACTCGAGAGCCTTGTGTTATGTGTGCCATGGCGCTAGTCCATTCTAGGATAGGCAGAGTCTTCTATGGGACAGCCTCTACCGATGGGGCATTTGGGACTAAATATAAAATCCACGCTCAAAAAGATCTGAATCACCGCTTTGAAGTTTTCAAAGGAGTCTTGGACCAACAGTGTGAAGACCTTAACAGGCCTATACACTATATCAAAATGAATTCTTAAAGGTTCACATAATTGTTACAGGAACGCTAGACCATTATAAATGGATTAATCTCGTGTCAGACTACTAGGCACACACGGTTGATGAACGAGACTAGATCAACGTGTGAATTACATAAGTAACATTTTACTTCTGGAAGATTTTGAATTACATAAACACATTTTAATATTTTACTTTGTTACTGTGTAAAATTCAATGCAATAAAGTTTTGGCCACTGTGACATCAAGCAT

Function

NR:

description
probable inactive tRNA-specific adenosine deaminase-like protein 3

GO: NA

KEGG:

id description
K15442 TAD3, ADAT3; tRNA-specific adenosine deaminase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974223.1 True 1739 mRNA 0.45 1 45210945 45212683

Neighbor

gene id symbol gene type direction distance location
LOC118956634 NA coding downstream 10283 45197003 ~ 45200662 (-)
LOC110504133 NA coding downstream 20825 45179364 ~ 45190120 (-)
LOC110520012 cssa21h2orf88 coding downstream 106659 45099333 ~ 45104286 (-)
LOC110520009 LOC106586132 coding downstream 224691 44964412 ~ 44986254 (-)
LOC110520006 LOC106581857 coding downstream 253602 44941359 ~ 44957343 (-)
LOC110520016 asnsd1 coding upstream 15567 45228250 ~ 45235027 (-)
si:ch211-136m16.8 LOC106586138 coding upstream 23817 45236500 ~ 45243387 (-)
LOC110520019 LOC106586141 coding upstream 89722 45302405 ~ 45327280 (-)
LOC110520020 LOC106586142 coding upstream 187602 45400285 ~ 45432858 (-)
LOC110520023 LOC106586145 coding upstream 222273 45434956 ~ 45462768 (-)
G263110 NA non-coding downstream 11361 45199219 ~ 45199584 (-)
G263039 NA non-coding downstream 132108 45078521 ~ 45078837 (-)
G263012 NA non-coding downstream 170406 45040218 ~ 45040539 (-)
G263011 NA non-coding downstream 171417 45039251 ~ 45039528 (-)
G263109 NA non-coding upstream 1062 45213745 ~ 45214224 (-)
G263120 NA non-coding upstream 9371 45222054 ~ 45222436 (-)
G263119 NA non-coding upstream 11389 45224072 ~ 45224612 (-)
G263127 NA non-coding upstream 32067 45244750 ~ 45248820 (-)
G262993 NA other downstream 198696 45010172 ~ 45012249 (-)
G261580 NA other downstream 1179440 43989524 ~ 44031505 (-)
G259579 LOC106586070 other downstream 2891560 42290259 ~ 42319385 (-)
G263274 NA other upstream 323649 45536332 ~ 45537542 (-)
G265988 NA other upstream 2386535 47599218 ~ 47599815 (-)
LOC110505248 gcg other upstream 2819364 48032036 ~ 48033434 (-)
G268310 NA other upstream 4282794 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 4289733 49494001 ~ 49503025 (-)

Expression


Co-expression Network