LOC110520016 (asnsd1)


Basic Information

Item Value
gene id LOC110520016
gene name asnsd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45228250 ~ 45235027 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110520016
ACCAGTTATCCCTCtcacttcgcctcttcctctctggtgctATCCAGAATCGTCGGGACGTCCCAAGCAAAGGGTCCCGAAAGGCAGCAACTCGCACCTCTCTAGTTTCAGAGGGgctgttttcatgaatttttatgaAATAGactattttgactttgtggctgtaactagtaactagtgacaaccattttttttgtctctgctagctagctaataaataatacatttagcTACTATATTCGCTACTATCTTCGTATGTTAGCTACCTCATCAAAATGTCTGCAATGAACCGGAAAGAGAACGAAAACTTTGCTGAGGGAGAGTCTACGCTGAAGAAGGAAATAAACTACAAGAAGAACTGGTCAACATGAAGAAGGTCCAGGATATGTCGAAATCTATACAATCTGGGAGGGAAATACAAATGAAGCCTTACTAGCTATAAATATGTGTGATATCTGTTGTATGCTGGAGAAGAGTATGCAGGAACACCTAAGGAATAGAGGGCCTAACTCCAGTCGTATCACCAAAAAAGCTTCAAATCCCCACTACCAGTGTCTGTTCTCTGCTCGTGTACTTCACGAGATTGACTTTCACCTCAGCCAGCACAAGACAGTAACAGGAATGTATTGATGTGGAACGAAGAGGTTTTTGGTGGACTGTCATTGAGACCAGAAGAGAAAGACACTGATGTTATTGGCCACCATCTCTCAGCATGTGACAGCCCTACAGAGATCCTGTCTGTCCTGGCCAAACTTTGTGGACCCTgggcttttaacattttttttaattttaattttttacatATTACCAACAGTCCGGACACTATCTCTGGTTTAGGAGAGACGTCTTTGGCCGGCGAAGCTTGCTTTGGCAATATGCCGCTGAGGAGAAGTCTTTCATTCTGACGTCTGTGGCTGCCCATCTCCCTGGCTCTGACAGACCACCATAGTGGCAAGAGGTTCCAGCAGTAGTTGTTTACAGAATTATTGCACAACTattattgcacaaccttcaatgttatgtcataattacgttaaattctggcaaattagttcgcaacgagccaggcggcccaaactgttgcatataccctgactctgcgtgcaatgaacgcaagagaCGAAGCGGCAATTGCCATCATTTCCTTGATTCCATGattctggctgctctggctgacCGCCACATCCCAACCCACCAACCAATTGACCTTCTGAATGTGGCATTCAAACTGCAAGAACCAAAGGTGCTGAAGGAGTCTACCAAGAAAAGCAAAAAACAGGATCACTGGCAGAGCAGGCCTGCAAGAGCTTCAGCACTTGAGAGGTTGGATACTGTGCTTGATGACAGCATTGGATGTGCTGTGTGGTTTGCAGCGAAAGGAACCGGCTTCCTCACAGAAGGCAACAAACCGAGGGGGGTTCACTTCATCTGCCAAGTGGTTTTGACAGGTTTTGGAGCCAATGAGCAGAAGGCAGGGTACTCCAGACACAGAGTCCGCTTCAAGACCTCTGGGCATGAGGGTCTGGTCCAAGAGCTGGTCATGGAGCTGGGCAGAATTTCTACAAGGAATCTCATTTCGAGATGACAGAATCATAGCGGACCATGGGAAGGAGGCTAGGCTTCCCTATTTGGACGAGGATGTGGTGTGTTTCCTGAATGCCCTGCCAGTGTCCGAGAAGGCAGATTTGTCGGGAGGAACTACTACTGAGGCTGGCTGCCAAGGAGCTGGGCCTTGGGACCTTTGCTCTACTCCCTAAGAGAGCCATGCAGTTTGGTTCCCGCATCGCAAAGAGGAAAAACAGCCATGGGAAGGCGTCAGACAAGTGCAAGAGACTCCTCACAACTTAGGTCAGCAGAACATTTAATCAGGAATGTTATCTTTGTTCACTGTATTGACATAAGCCAACTAAGTCATGCTTGTAATTCGGGTCACAGTGAGCCACAGTATCAACAGACATGTTTTAATTCATTTGAATACATTTACTCTTGATATGTTTTTGTAATAGTCAAAGTTGCTGTTTTCTTCACATTGTCAATCTCACACATGCACCTGAGTAAGCTATATTGTGTAAGACTTCACATCTGGAAGGTCTTCTCTGAAGTACCAGTCACATTAAACATAGGAAGGAAGGTTTCCCACACCTTGAAGATCTTCTCTGAAGTACCAGTCACGTTAAAGATAGGAAGCAAGGTTTCCCACATCAAAACGGCCAGAAATCTGATGAATATACACAGGCTTTCTGTAGAGGGAAAAGGAAATGTGTGCTTAGAGAATGCATTGTTTTTACAGCCATGAATGTTGACCATCAATCTTAAATAGTACCTTGAAATGAGCCTTGACAAAAAAGTTTCAAATCCATCAAGTTATGGATTGATTACCAGCACAAATTAAGGAAATTACAAACTGTTTACCTTCTTTCCATCAAGAAAAACATCCTCCAATAAAGGCTTTTCTTGGAAAACATGTAGAAACAAGGACACtgcaaaaaagaaagaaaaggccTAACTTAATAATGAGGGCGGCCACATTCCATACAGATGAATATGTACACACTGTAGAAAATTAGGAGGGTTATTTATCAAGTAGAATGCGGTTTGCTCTTATCAGCAAAAAGATTACTCGATCCCAGTTTGATCCCTTATAACATTAGccaaagtgtcacgccctgacctgagtattctttgttttctttatatattttggttaggtcagggtgtgacatggatgATGTATGTGTTtggtactgtctaggggttttgtaggtttatggggttgtttaccatctaggtgtttatgtatgtctatggctgcctagattggttctcaattagaggcagctgtttatcgttctctctgattgggaaccatatttaggcaggcatcttctttgggtatttcgtgggttattgtctatgtgatgttgcatgtttgcactcagTTTTGATAGCGTTCACGGTCGTCTTGTTATTTTGcttgtttagtgtacttcgtggtttttcgtctttcattaaaaatatgttttcacatcACCCTgtgctttggtctcctcactacgacgatcgtgacacaacATGTACTTTTAATAATGGCTTAATTCGGGCTGAAACAAccacatttggaaaaagtcaagcggtgtgaatactttctgaaggcactgtattcgtACCTTAACCATGGGGTGTTTTAGCCACAATGGAGCACGTAATGAGTGTTAAAGGTAAACTTATTCTGCAATAGAATCTAAATATCGACAGACCCTAAAGTAGCTTTCCTATACTTCAGGAGTAGAGTTGCAAGGGTATAATATTGGAAATTCCAAGTAAACTACCAGAATatatcacaagacatctagtggcccttttaggtacttcagattatcacaggtgtctgtaattatctctggccctctgtcaGGTGTAACGTCAaataatgaaatgataaaatgacaaagctgtaaaacattatcctaaatataaacgtATGTTTGTTCCTTGTATAATGACATACTGGGGCGTAGGTTTAACTACATGTACTTCAGCTAGAAAACTCCATGTTTAGCCATGCAAGGCATTCTTTAACCATCCGCCTCCCGCATAGCCTGCTGGGTAAAGTATTCTAAATGTTattaacacataacaacacataaaccaTCTACGttgtgaataccattggtgtttaatatgattaTCCTTTTTTCTTCAACATTTTTCTATGTCAATATGTTATTGTTCATGTTTTGgcgtcaaactggtggcagttgtgaaaaaagtcaatagttggacGAGTTGCAGAGGTAATTGAAAATAGTGCCATTGTTgctttttttcattaattaggctatttctcttgaaccatatggtttatctactagaaactcatggacaatatggacacagatatataAAAAAGtaaagttattcaagtatatATTACCAAAATTACTATAGATTCCGGTGACTTTGGTAAATTAttggtagctttgcaaccctattcAGGAGGAATCCTGGCCCTGCTGGAGCTGATGCGTAGCGCAAGGCCAGCACTGCAGTGTATGGTTGCTACCTTGGTGGTGTCACATTTGAAAAGACGCTTGTGTTTGAGGCCCTGGGACCTCGTTTATCAAAGGTGCATGTGCACAAAAAATACTCTAAAccttgataaatgaggcccctgatATGCTACAGTGCCATGCCGGTGCTGGTCAATCTCCTTGGCAGCCAGCAGGCCATGCTCCACTTCCGCTGTGCCTGGTCAGGAACAGTGACCAGGACCAGTCCCTCATAGCCCAGCAGGTTAGTACTGTTTAACCAATgtcttgtgtgtgcgtgtgtgtgtttgcatgtttgACCATTcctgtgtgcttgtttgtgtgtgtgacggtCC

Function

symbol description
asnsd1 Predicted to enable asparagine synthase (glutamine-hydrolyzing) activity. Predicted to act upstream of or within asparagine biosynthetic process and glutamine metabolic process. Orthologous to human ASNSD1 (asparagine synthetase domain containing 1).

NR:

description
PREDICTED: asparagine synthetase domain-containing protein 1

GO:

id name namespace
GO:0006529 asparagine biosynthetic process biological_process
GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110520016 True 4384 mRNA 0.42 6 45228250 45235027

Neighbor

gene id symbol gene type direction distance location
LOC110520013 LOC106586136 coding downstream 15567 45210945 ~ 45212683 (-)
LOC118956634 NA coding downstream 27588 45197003 ~ 45200662 (-)
LOC110504133 NA coding downstream 38130 45179364 ~ 45190120 (-)
LOC110520012 cssa21h2orf88 coding downstream 123964 45099333 ~ 45104286 (-)
LOC110520009 LOC106586132 coding downstream 241996 44964412 ~ 44986254 (-)
si:ch211-136m16.8 LOC106586138 coding upstream 1473 45236500 ~ 45243387 (-)
LOC110520019 LOC106586141 coding upstream 67378 45302405 ~ 45327280 (-)
LOC110520020 LOC106586142 coding upstream 165258 45400285 ~ 45432858 (-)
LOC110520023 LOC106586145 coding upstream 199929 45434956 ~ 45462768 (-)
LOC110520026 tmbi1 coding upstream 304817 45539844 ~ 45567046 (-)
G263119 NA non-coding downstream 3638 45224072 ~ 45224612 (-)
G263120 NA non-coding downstream 5814 45222054 ~ 45222436 (-)
G263109 NA non-coding downstream 14026 45213745 ~ 45214224 (-)
G263110 NA non-coding downstream 28666 45199219 ~ 45199584 (-)
G263127 NA non-coding upstream 9723 45244750 ~ 45248820 (-)
G263133 NA non-coding upstream 20686 45255713 ~ 45260199 (-)
G263122 NA non-coding upstream 59712 45294739 ~ 45296453 (-)
G263293 NA non-coding upstream 272219 45507246 ~ 45507568 (-)
G262993 NA other downstream 216001 45010172 ~ 45012249 (-)
G261580 NA other downstream 1196745 43989524 ~ 44031505 (-)
G259579 LOC106586070 other downstream 2908865 42290259 ~ 42319385 (-)
G263274 NA other upstream 301305 45536332 ~ 45537542 (-)
G265988 NA other upstream 2364191 47599218 ~ 47599815 (-)
LOC110505248 gcg other upstream 2797020 48032036 ~ 48033434 (-)
G268310 NA other upstream 4260450 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 4267389 49494001 ~ 49503025 (-)

Expression


Co-expression Network