LOC110520018 (LOC106586140)


Basic Information

Item Value
gene id LOC110520018
gene name LOC106586140
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45279937 ~ 45292634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596975.2
CAGTGACATAAACGCTGTTGGCAGTGCAGAAAAGACGAGAGAAGGTTGCTGGAGCTGTTCGGGAGATTTTATTGTTTTGCATTTGAACTAAAAAAGGATTTTCGGCTAAGATATTTGTTTCCAACTTCAGCTACAGTGATAGCTAAGTTTGGAAAGGAGAAAGGGGAGCTTTGGCGTGCGTTTACCGACATTTTAATGCACAGTGTCTCCCATCGATAGCCTTGCTTTACGAAGTTAAATAAATATTGGGCAAACGTTAGTTATTTCCGGAAAGTATTACAATGGATAACGCTGGATCTAAGAAACGTTGCTGTGAATCGGTCCAAGAGTTCTTCACATCACCAAAGTTCCTTATTTACCTGGGACATGGCCTCTCGACATGGGGCGATCGTATGTGGAACTTCGCTGTAGCCGTATTTCTGGTGGGGCTGTATGGCAACAGCCTCCTGCTCACGGCTGTGTACGGACTGGTGGTGGCAGGGTCAGTGCTGCTCCTTGGAGCCATTATCGGTGACTGGGTTGACAAAAACCCAAGACTCAAAGTGGCCCAGACTTCGCTGGTTGTCCAGAATTTTTCTGTCATACTATGTGGGATCCTCTTGATGGTGGTTTTCCAGTTCAAAGAACAGATTGCAGAGTTATACAATGGATGGATTTTGACATGCTGCTATATCCTGGTCATCTCCATAGCCAACATTGCTAATTTGGCCAGTACTGCCATGGCAATTACCATCCAGAGAGACTGGGTGGTGGTTGTGGCTGGACAGGACAGCAGCAAGCTGGCAGACATGAACGCCACAGTGCGGATCATCGACCAGCTGACCAACATCCTAGCGCCCATGCTGGTGGGTCAGATCATGTCTTTTGGCTCAAACTTCATTGGTTGCGGCTTTATTGCGGGCTGGAACCTGTGCTCTATGTGCCTTGAGTACGGTCTGCTATGGAAGGTCTACCAGAAAACCCCGGCACTGGCCTTGAAGGCTGGCAAAAAAGAGGATGACCAGGAACTGAAACAACTTAACTTCCCGAAAGAGCTAGAAAACGGCAAGGGCACAGTAGAGGGCTCCCAGCTCATGAACGAgatggctgtcgtcaaggccgaCTCTCCCAAGAAGACGAGCTGCTGCTACCAGATAACAGAGCCCCTGCGCACCATCCGCGACGGCTGGGTGGCCTACTACAACCAGTCCATCTTCTTCGCAGGCATGTCGCTGTCCTTCCTCTACATGACGGTGCTGGGATTTGACTGCATCACCACGGGCTACGCCTACACCCAGGGCCTCAACGGCTCTGTGCTTAGCCTGCTGATGGGTGCCTCAGCCGTGTCAGGCATCTGTGGCACGGTGGCCTTCACCTGGGTTCGCAAGAAGTGTGGCCTAATCCGCACAGGCTTCATCTCGGGTGTGGTGCAACTCTCCTGCCTAGTTCTGTGCGTGGCGTCCGTCTTCGCACCGGGCAGCCCCTTCGACCTCAGCATTTCGCccttccaggacatctacagccaCCTGATCGGAGACAGTGGCAACTTACCAGAGGCCGACCATCCGGCTAGCATGCTGAACATCGATGGTCTGCTGGTCAACGGTTCGACTGCACTGCCCGCTGAAGAACTGCCGCCTCTGCAGTCCTACCTGTCAGTCAGCCTGCTGTTTGCAGGGGTTATTGCTGCTAGAATTGGTCTATGGTCCTTTGACTTAACCGTGACCCAGCTCATCCAAGAGAATGTGATCGAGTCAGAGAGGGGGGTGATTAATGGTGTCCAGAACTCCATGAACTACCTCCTGGACCTGTTGCACTTTATCATGGTGATTCTGGCGCCCAACCCTGAGGCCTTTGGCCTTCTCGTCATCCTCTCCGTCTCCTTCGTGGCCATGGGCCACATCATGTACTTCAGGTTTGCCTTCAAGAGCCTCGGGCGGCGCCTCTTCCTCTGCTGCTCGCCAGAGCAGAAGGCCCAGGCCCTCCCGGACTCTCCCTCCTCGCTTCCCACCACCGTGTAGCCCATTAAAGAGACGCTGTCCCTGCTAATAGCTCTACCTGCAGCCTGCAGTGCACACTATTgtccactcctcctcctgcccgcTAGCTATCAACCTAAACATGCTTGCGTCTAGCCCCCACAGCGCCTAACCCTAGCATGTGCTGTCCTTTGCCATTGTGATATAGCATTAGCTGTTTTGCGGAAGGGGGAAGAGTAGTGCAGCCTCAGACACAGAGAAGCAGCCCCTCACAGACAAAAAGCTCAGCTTGAAAGAGGCCTTATAGAGAGGTGTCAAAAAATAAACATCACTTCTCCCTACTTCCAATATTTCAATCTAGCTGTCTTGTTATTCAAGGGGCTGCAGCTAGAGCTACAGAAAATGAGGGAGGAAAAATGCAGGTATTGCTTGCAGTTACTACGGTTACAGCCACATACTACTTAAGTATGTTCTGTGGTTCTAGTGGTGTTTGCATCTCATTACAGCTCTGCATCAGCCTCGCGGGATTTTCATTTCCACTTTTGTTTCTCAGTAGTTCATTGTTACTATAGCCATTCACGTTAGCATTTCAAACGTCTCAGTTACTTAAGCTTTAGTAATTGACAATGATTTAAATGACCAGTTTTACCAGTGAGAAACAGGTTCTTACTTATTTTGCTTAATGAGCCTGGGGTGAGCCTCTTTAATACATGGTTATAAGGGCTATGCAAATTATTTATTCAAGGAGTGcagatactgatagatagatagataaatagactgaacaaaaatataaacgcaacatgtaaagtgttggtcccatgtttcatgacctgaaaaaaatatcccagacattttccatatgcacaaaaatgcacaaatttgttttcatccctg

Function

NR:

description
solute carrier family 40 member 1-like

GO:

id name namespace
GO:0034755 iron ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005381 iron ion transmembrane transporter activity molecular_function

KEGG:

id description
K14685 SLC40A1, FPN1; solute carrier family 40 (iron-regulated transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596975.2 True 2855 mRNA 0.49 8 45279937 45292634

Neighbor

gene id symbol gene type direction distance location
LOC110520014 ormdl1 coding upstream 70346 45191720 ~ 45209591 (+)
LOC100135920 LOC100135920 coding upstream 171350 45105779 ~ 45108587 (+)
hibch hibch coding upstream 187862 45041037 ~ 45092075 (+)
LOC110505238 NA coding upstream 244591 45028832 ~ 45035346 (+)
LOC110520010 LOC106586134 coding upstream 269313 44989108 ~ 45010624 (+)
glsb LOC106586143 coding downstream 47695 45340329 ~ 45399501 (+)
LOC118956876 NA coding downstream 201675 45494309 ~ 45495980 (+)
LOC110520024 cxcr4 coding downstream 207504 45500138 ~ 45502139 (+)
dars1 sydc coding downstream 216831 45509465 ~ 45539298 (+)
pnkd pnkd coding downstream 257278 45549912 ~ 45561382 (+)
G262827 NA non-coding upstream 25489 45254197 ~ 45254448 (+)
G262820 NA non-coding upstream 36846 45242850 ~ 45243091 (+)
G262814 NA non-coding upstream 52553 45227173 ~ 45227384 (+)
G262807 NA non-coding upstream 81335 45198350 ~ 45198602 (+)
G262735 cssa21h2orf88 non-coding upstream 177499 45100039 ~ 45102438 (+)
G262875 NA non-coding downstream 42493 45335127 ~ 45335366 (+)
G262852 NA non-coding downstream 107643 45400277 ~ 45488380 (+)
G263331 NA non-coding downstream 298619 45591253 ~ 45591539 (+)
G263362 NA non-coding downstream 324504 45617138 ~ 45617349 (+)
G263372 NA non-coding downstream 330364 45622998 ~ 45623306 (+)
G262037 NA other upstream 754529 44520419 ~ 44525408 (+)
G261749 NA other upstream 1027386 44252069 ~ 44252551 (+)
LOC110519969 LOC106586020 other upstream 4827757 40440040 ~ 40452542 (+)
LOC110519960 LOC106586058 other upstream 5611849 39658753 ~ 39668297 (+)
G254816 NA other upstream 6435381 38843510 ~ 38844556 (+)
G263547 LOC106586150 other downstream 546287 45838921 ~ 45839480 (+)
G263710 NA other downstream 641485 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 782850 46075484 ~ 46079425 (+)
G263859 LOC107588258 other downstream 891500 46184134 ~ 46184804 (+)
LOC110520046 LOC106586167 other downstream 1538374 46801058 ~ 46832288 (+)

Expression


Co-expression Network