LOC118956876


Basic Information

Item Value
gene id LOC118956876
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45494309 ~ 45495980 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005046279.1
tgagggggggacagaggaataaatacgtgtagtgtgattggggaatgaaaaccaggtgtgcagggaacaagacaaaacgaATGGATACTTGAAAATGGAGCGGCGacggctagaaagccggtgacgtcgatcgccgaacgccTTCTGAGGAgaaaaaaacgaaatactttCATCCTTGCAAAAACATTGGTTGCTGTGCAGGCTGGCAAACGCTCAATTTTCATTTGTTTTCATAGCTTTTGTATTGACATTTTATTGGATATATTCATTATAATAATATTGCTTCATGGTTCCGCCTTAATCGGAGAAGTTGTCTCGTTCGTGCACATAATTCTCTGATGTAGGGCGAAATTGAATTTCAAAAGTGAAACAATTGTTTCTGAGGTCAGACAGAGGCGGCAATGTTTATACAAACCATCAGGGTTGGAAATCAAATGCTAGGCTCGAAGCGAAAGGAGACAAACTTTGCACAAAAGCACAGGCAGCAGGTAAAAACAAGCATGAGGGATCGCTCAACCTGACTACCTCCTTCCTACAAGCTGGCAAAaaagcttcccctcccccaagaCTCCACAGACGAAGATCAGTAGTACCCCTGTAAAATCACTTCAGATAATGGTGTTGTGCATTCTAATATGAATACTGAGAATACCTTTATGTTCAGACATATTGGAACAAACAATGCAACTGAGATTTATGCACAAAACAATCCAAAATGCGCACTATTGTAGGCTTAATCACATGACAACAGGAAGATGGATGGGCTCGCTTTCCTTTGGTTCTTTGTTTAGGTATGGCAATGCAAATATCaggacaagcatttcgctacactcgcattaacatctgctaaccatgtgtatgtgacaaataaaatttgatttgatttgacttggacAGGGAAATTTTAAATTAAAATCGACAAAACtctttaaaatgttttatgttgCTAAATCAACCTGTTGGCAAAGGGGAACATAATAAACCGAGAGAAAATGAAATGCTCTGTAAACCAGACTGCAttccaaa

Function

NR:

description
LOW QUALITY PROTEIN: transcription and mRNA export factor ENY2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005046279.1 True 1026 mRNA 0.40 2 45494309 45495980

Neighbor

gene id symbol gene type direction distance location
glsb LOC106586143 coding upstream 94808 45340329 ~ 45399501 (+)
LOC110520018 LOC106586140 coding upstream 201675 45279937 ~ 45292634 (+)
LOC110520014 ormdl1 coding upstream 284718 45191720 ~ 45209591 (+)
LOC100135920 LOC100135920 coding upstream 385722 45105779 ~ 45108587 (+)
hibch hibch coding upstream 402234 45041037 ~ 45092075 (+)
LOC110520024 cxcr4 coding downstream 4158 45500138 ~ 45502139 (+)
dars1 sydc coding downstream 13485 45509465 ~ 45539298 (+)
pnkd pnkd coding downstream 53932 45549912 ~ 45561382 (+)
LOC110520030 gmpaa coding downstream 75670 45571650 ~ 45580003 (+)
asic4a LOC106586149 coding downstream 230257 45726237 ~ 45823301 (+)
G262852 NA non-coding upstream 5929 45400277 ~ 45488380 (+)
G262875 NA non-coding upstream 158943 45335127 ~ 45335366 (+)
G262827 NA non-coding upstream 239861 45254197 ~ 45254448 (+)
G262820 NA non-coding upstream 251218 45242850 ~ 45243091 (+)
G262814 NA non-coding upstream 266925 45227173 ~ 45227384 (+)
G263331 NA non-coding downstream 95273 45591253 ~ 45591539 (+)
G263362 NA non-coding downstream 121158 45617138 ~ 45617349 (+)
G263372 NA non-coding downstream 127018 45622998 ~ 45623306 (+)
G263376 NA non-coding downstream 128297 45624277 ~ 45624493 (+)
G263399 NA non-coding downstream 148213 45644193 ~ 45644394 (+)
G262037 NA other upstream 968901 44520419 ~ 44525408 (+)
G261749 NA other upstream 1241758 44252069 ~ 44252551 (+)
LOC110519969 LOC106586020 other upstream 5042129 40440040 ~ 40452542 (+)
LOC110519960 LOC106586058 other upstream 5826221 39658753 ~ 39668297 (+)
G254816 NA other upstream 6649753 38843510 ~ 38844556 (+)
G263547 LOC106586150 other downstream 342941 45838921 ~ 45839480 (+)
G263710 NA other downstream 438139 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 579504 46075484 ~ 46079425 (+)
G263859 LOC107588258 other downstream 688154 46184134 ~ 46184804 (+)
LOC110520046 LOC106586167 other downstream 1335028 46801058 ~ 46832288 (+)

Expression


Co-expression Network