dars1 (sydc)


Basic Information

Item Value
gene id dars1
gene name sydc
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45509465 ~ 45539298 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596990.2
CTAGTTTCAGCCCGGATTGAGAAACTATTTTTCTGTGCATCAGGGAAATAGGCCCGTCTTCTACCACCTATGAATGCTCTCTGAACAGATGACTCTGTCTCAGAAGTAACTGTCAAGAATCTACCATCTCAAAAGAATAATAACTGTCATGACTAAAGATGGAGTCCAAGGGGTCGTGGAGGAGGCGGACCAGGCCCCGTCGAAGAAAGGCCTGAAGAAACAGCAGAAGGAAGCGGAGAAAGCTGCTAAGAAGGCTGAGAAGCAGGCCAAACTGTCTGCTGACCAACAAAGCACAGATGACGATGATTTTGCCAAGGATCGGTACGGTGTCCCTCCGATGGTACAGTCCCAGCAGAAACTGGACAGAGGGTTGGTGCGTGTCCATGAGCTGACACCTGAGAAGGCAGGCCAGCTGATCTGGGTGCGTGCCCGGATTCACACCAGCAGAGCTAAAGGGAAGCAGTGCTTCTTGGTCCTGCGTCAGCAGCAGTTTAACGTGCAGGCCCTGGTCGCCGTGGGGGAGCGTGCCAGCAAGCAGATGGTCAAGTTTGCCGCCAACATCAACAAGGAGAGCATTGTGGACGTGGAGGCGGTGGTGAAGAAGGTGGAGCAGACGATCGAGAGCTGCTCTCAGCAGGATGTGGAGTTGCACATTGAGAGGATTTTTGTCGTCAGCCAGGCCGAGCCTCGTCTGCCCCTGCAACTGGAGGATTGCGTGAGGccggaaggagagggggatgagGATGGAAGAGCGACGGTCAACCAGGACACCAGATTGGACAACCGAGTCATTGATCTCAGGACAACGACCAGCCAGGCCATCTTCCGCCTGCAATCCGGAGTGTGCCAACTCTTTAGAGACACCCTGACCAACAAGGGCTTTGTGGAGATCCAGACCCCCAAAATCATATCAGCTGCCAGTGAGGGCGGGGCAAACGTCTTCACTGTGTCCTACTTCAAAACCAGCGCCTACCTGGCCCAGTCTCCCCAGCTCTACAAGCAGATGTGTATCTGTGCTGACTTTGACAAGGTGTTCTGTGTGGGACCAGTGTTCAGAGCAGAAGACTCCAACACCCATCGTCATCTGACAGAGTTTGTGGGCCTGGATATTGAGTTGGCGTTCAACTACCACTACCACGAAGTGATCGAGTCCATCACCGACACCATGGTTCAGATCTTTAAAGGACTCCGAGACAAgTTCCAGACAGAGATCCAGACAGTGGGGAAGCAGTACCCCAGCGAGCCATTCAAGTTCCTGGAGCCCACTCTGAGGCTGGAGTACTCGGAAGGTGTGGCCATGCTCCGGGAAGCCGGGGTGGAGATGGGAGACGAGGAGGACCTCAGCACTCCCAATGAGAAGTTGCTTGGTCGTCTGGTGAAAGAAAAATATGACACTGACTTCTACGTGCTGGACAAGTACCCCCTGGCAGTGAGGCCCTTCTACACCATGCCTGACCCCAACGACAAAAAATACTCCAACTCCTACGACATGttcatgagaggagaggagatcctCTCTGGagcccagaggatccacgatgcCCAGCTGCTCACTGAGAGGGCCATGCACCACAACATTGACCTGGAGAAGATCAAGTCCTATATTGACTCCTTCCGATACGGAGCTCCCCCACATGGAGGTGGTGGCATTGGACTCGAGAGAGTCTGCATGCTCTACCTGGGTCTTCATAATGTCCGCCAGACCTCCATGTTCCCCCGTGATCCCAAACGCCTGACCCCCTGAGCGGCCATCGATCGCCATTGGACACAGATGCAGGACATGGGGAAACTACATTTTAATCTCCAAACAcaccagacagaggagacatgAGTGGCGCAACACTGAAGTGCCACTGTGATTAACAAGAGAATAATAGATAACCAAGCCAGGCTACTACGGTTACCAGTATTCAGAAATAGAACCATAATATAAGGGATAAATAATTTGAAGACATTATAGAAGTGGAATATGATTTAGAGATGTAATAACTTCGGCTTAGCTTGAGTGCCTGTCTGTTTCTGCCGTCTTGccatgtttggcttgacaatgataATTGAGTAGGCAAACGTACAAACCGTTTCCAAGCTTCCCTAGGCTCACCAATGGGGATAATAAACCTGTGTTTTATGTCTAACACTTTATCAACTTTGATACCAGTCTTTGTCAGAGTACAGAGGTATGAATAATAAATAGTCTTGGTCTGGTGACATCATTTTTAATTATTGCAGCTGTTTTTAAAGTAATTGGAGGAAAAAATTAATAAAAGTACTTCCAAAAGTT

Function

NR:

description
aspartate--tRNA ligase, cytoplasmic-like

GO:

id name namespace
GO:0006422 aspartyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004815 aspartate-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K22503 DARS1; aspartyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596990.2 True 2281 mRNA 0.50 18 45509465 45539298

Neighbor

gene id symbol gene type direction distance location
LOC110520024 cxcr4 coding upstream 7326 45500138 ~ 45502139 (+)
LOC118956876 NA coding upstream 13485 45494309 ~ 45495980 (+)
glsb LOC106586143 coding upstream 109964 45340329 ~ 45399501 (+)
LOC110520018 LOC106586140 coding upstream 216831 45279937 ~ 45292634 (+)
LOC110520014 ormdl1 coding upstream 299874 45191720 ~ 45209591 (+)
pnkd pnkd coding downstream 10614 45549912 ~ 45561382 (+)
LOC110520030 gmpaa coding downstream 32352 45571650 ~ 45580003 (+)
asic4a LOC106586149 coding downstream 186939 45726237 ~ 45823301 (+)
LOC110504149 wnt6 coding downstream 312884 45852182 ~ 45884194 (+)
LOC110520033 LOC106586153 coding downstream 364367 45903665 ~ 45933022 (+)
G262852 NA non-coding upstream 21085 45400277 ~ 45488380 (+)
G262875 NA non-coding upstream 174099 45335127 ~ 45335366 (+)
G262827 NA non-coding upstream 255017 45254197 ~ 45254448 (+)
G262820 NA non-coding upstream 266374 45242850 ~ 45243091 (+)
G262814 NA non-coding upstream 282081 45227173 ~ 45227384 (+)
G263331 NA non-coding downstream 51955 45591253 ~ 45591539 (+)
G263362 NA non-coding downstream 77840 45617138 ~ 45617349 (+)
G263372 NA non-coding downstream 83700 45622998 ~ 45623306 (+)
G263376 NA non-coding downstream 84979 45624277 ~ 45624493 (+)
G263399 NA non-coding downstream 104895 45644193 ~ 45644394 (+)
G262037 NA other upstream 984057 44520419 ~ 44525408 (+)
G261749 NA other upstream 1256914 44252069 ~ 44252551 (+)
LOC110519969 LOC106586020 other upstream 5057285 40440040 ~ 40452542 (+)
LOC110519960 LOC106586058 other upstream 5841377 39658753 ~ 39668297 (+)
G254816 NA other upstream 6664909 38843510 ~ 38844556 (+)
G263547 LOC106586150 other downstream 299623 45838921 ~ 45839480 (+)
G263710 NA other downstream 394821 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 536186 46075484 ~ 46079425 (+)
G263859 LOC107588258 other downstream 644836 46184134 ~ 46184804 (+)
LOC110520046 LOC106586167 other downstream 1291710 46801058 ~ 46832288 (+)

Expression


Co-expression Network