si:ch1073-416j23.1 (LOC106586148)


Basic Information

Item Value
gene id si:ch1073-416j23.1
gene name LOC106586148
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45580103 ~ 45587671 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596995.2
TGTGATATTATATCACAAATTGTCGTAATGTATTTATTGGCTATTGATTTTGAAACTAGTGATACGTATTGATTATTGATAGATTTATTCATTTAAATCCATGAAATAGCCTACCTGTTTCGGTGCAGTTTGGATTATCCCAGTGATAGGTATGGGCTTTTATTTGGCTCCCCGAAAGCATGTTCATTTGACACCCTGCGTCCTACCTGAAAGTAAAATGGGCGAAGCCTTTATCAGGGAGCTTCTCTCTCTGTGCCTTCAACGGATTGCTGTGGAGGAAAATGCAATGAACAACACTGAACTTGAGTTTATTGAGGTAGTAAATAACTACGATGCCACAAGGAAGAAATGGTTACATGCAGAGCTGGAGCTGAAGAGGCACAAGGCGCTACTGTTGAAGTCCGACATAGCCCAGGCTGCCCTGGAGGTCAAACTAAAACACTGTCGCAACCAGGTCGATGTGGAGATCAAGAAGCGCTACAAGGCTGAGGCAGACTTTCAGTACCTGCAGCGGCAGATGCAACTGATGTGTGACATACTGGTCCACGACAGCAAGTCCAATGCGTGTCTGAATGACGAGCAGAGATCTCTGCTGGCCAACTTCAACCACAGGGGAGCCAACGTCACCCAGCACAAGAGCAAACGATTATCTGTCATCGATGAGTCTTCATTCCTGTCTCACTCTGATATTAGTTACGATAGAACTGATGATGACATGGACCTGGATGTGACAGCTGTGAAACCACTTAAGTCGAGAGCAAGGGAAAAAAGGCGCTCCTCCATGGGACCGACTGTCGGTGCGCACGCAGCGAAGAGGGGAAGAGTAGGTGGCCGTTCAGACGATCTCCTTGAAAGAAGACCAATGGAAAAGGAAGTTGAGACTACGATTGTGACCGCGTCCGTCACAACCCCAGAGAGCGGAGGTCAAATTCACATGGTGATCGACATCACCCAGGAAACACCTGAGAAACTACCCAGGACTTACCGGAAGGAGCACCAGATTTCATCTGTTGGCGAGCAAACGTCCGTGTGGACTCCCAATGATGAAACCGCTGTTGAGCATGATACTACTGTGGAGCCGGACACCATGACAGAAATGGAGTCCACCACAGAGCCTAGATTTAACCAGGTGTTCACTCCCACTGTTAGCAAAACTTTGAGACACTACTTCCTGTCTAAAACGGTGATTCGTCCAGAAACGTGTGTTCCATGTGGGAAGAGGATCCGGTTTGGGAAGATGGCTGTGAAGTGCAGGGACTGCCGTGTGGTAGCTCATCCCGAATGTAAACCGAAGTGCCTAGAAAGCTGCTCTGCCTCATGTGGAGCTCATGGAGCTGAGGACACGTTAGAGAGCTTTGCCCCACCTACCCAGCCTAGGATCCCTCAGATTATTGTTCAGTGCGTGAATGAAATTGAGAAAAGGGGATTGGAGGAGAAAGGCATCTACCGTGTTCCTGGGGGTGAGCGTATGGTGAAGGCGCTGAGGGAGAGATACATTAATGGGAAAAGGCCGCTCATGCTCAGTAGAGTGGATGAGATCCACGTTGTCTGTGGACTTCTCAAGGACTTCCTGAGGAAACTGAAGGAGCCTCTCATCACCTTCAGGCTGCATAGAACCTTCATGGAGGCCTGTGAGATTCCAGATGATGACGACAGCGCAGCAATAATGTACCGAGCCATAGGGGATCTGCCTAAGCCCAACAGAGAGACACTGGCTTTCCTCATGCTTCATCTACAGAGAGTCATGCAGAGCCCCCTCTGTCAGATGGACAAGAACAATTTGTCCAGAGTGTTTGGACCAACCATTGTTGGACATGGAATGGCAGAGCCCTCCCCAATGACCATTATGAGGGACACAAACATTCAGCCAATGGTCATAGGCAGAATGCTGTCGTTCCCTGCTGATTACTGGAAACGCCTCATCATGGTGGCGAGGGACCAAGTTATATCATCAGTTGTCGACGCCAACATCAATAGCGAGAGCCACAGTACAGACAGAGATCGTCTGTTTAAACCGCTGACTTCCCCTGAGCTGAGTAAATACCCCAAGACTCCTACCAGTGGTTCTCTTAAGGGCAGAATGAAGAATGCCTTCAACAATACtaACAGGGCAAAGACTGACCCGGGCAAAAATAAGTTCTTCACATCCCCCAACTGATATCATTGTGGCATAGACTGTTGGTATATTCATGAGTAACTAAAGCACTTCACATTTGGCTATCTTTTCAgtgtttaaaaatgttttgtatcATAACATGGAGTATAAGGGTTAGAATGGTGTACATTTTAGGAACCACACTAATGCATGAGAAACTTTAAATAAACTACATTATGAAACTGTT
>XM_036974256.1
GGACAGGCAACGGGATCGCGCTGGGTGGTCACGTCCACATATCCAGCAGCAGCCTACCTGTTTCGGTGCAGTTTGGATTATCCCAGTGATAGGTATGGGCTTTTATTTGGCTCCCCGAAAGCATGTTCATTTGACACCCTGCGTCCTACCTGAAAGTAAAATGGGCGAAGCCTTTATCAGGGAGCTTCTCTCTCTGTGCCTTCAACGGATTGCTGTGGAGGAAAATGCAATGAACAACACTGAACTTGAGTTTATTGAGGTAGTAAATAACTACGATGCCACAAGGAAGAAATGGTTACATGCAGAGCTGGAGCTGAAGAGGCACAAGGCGCTACTGTTGAAGTCCGACATAGCCCAGGCTGCCCTGGAGGTCAAACTAAAACACTGTCGCAACCAGGTCGATGTGGAGATCAAGAAGCGCTACAAGGCTGAGGCAGACTTTCAGTACCTGCAGCGGCAGATGCAACTGATGTGTGACATACTGGTCCACGACAGCAAGTCCAATGCGTGTCTGAATGACGAGCAGAGATCTCTGCTGGCCAACTTCAACCACAGGGGAGCCAACGTCACCCAGCACAAGAGCAAACGATTATCTGTCATCGATGAGTCTTCATTCCTGTCTCACTCTGATATTAGTTACGATAGAACTGATGATGACATGGACCTGGATGTGACAGCTGTGAAACCACTTAAGTCGAGAGCAAGGGAAAAAAGGCGCTCCTCCATGGGACCGACTGTCGGTGCGCACGCAGCGAAGAGGGGAAGAGTAGGTGGCCGTTCAGACGATCTCCTTGAAAGAAGACCAATGGAAAAGGAAGTTGAGACTACGATTGTGACCGCGTCCGTCACAACCCCAGAGAGCGGAGGTCAAATTCACATGGTGATCGACATCACCCAGGAAACACCTGAGAAACTACCCAGGACTTACCGGAAGGAGCACCAGATTTCATCTGTTGGCGAGCAAACGTCCGTGTGGACTCCCAATGATGAAACCGCTGTTGAGCATGATACTACTGTGGAGCCGGACACCATGACAGAAATGGAGTCCACCACAGAGCCTAGATTTAACCAGGTGTTCACTCCCACTGTTAGCAAAACTTTGAGACACTACTTCCTGTCTAAAACGGTGATTCGTCCAGAAACGTGTGTTCCATGTGGGAAGAGGATCCGGTTTGGGAAGATGGCTGTGAAGTGCAGGGACTGCCGTGTGGTAGCTCATCCCGAATGTAAACCGAAGTGCCTAGAAAGCTGCTCTGCCTCATGTGGAGCTCATGGAGCTGAGGACACGTTAGAGAGCTTTGCCCCACCTACCCAGCCTAGGATCCCTCAGATTATTGTTCAGTGCGTGAATGAAATTGAGAAAAGGGGATTGGAGGAGAAAGGCATCTACCGTGTTCCTGGGGGTGAGCGTATGGTGAAGGCGCTGAGGGAGAGATACATTAATGGGAAAAGGCCGCTCATGCTCAGTAGAGTGGATGAGATCCACGTTGTCTGTGGACTTCTCAAGGACTTCCTGAGGAAACTGAAGGAGCCTCTCATCACCTTCAGGCTGCATAGAACCTTCATGGAGGCCTGTGAGATTCCAGATGATGACGACAGCGCAGCAATAATGTACCGAGCCATAGGGGATCTGCCTAAGCCCAACAGAGAGACACTGGCTTTCCTCATGCTTCATCTACAGAGAGTCATGCAGAGCCCCCTCTGTCAGATGGACAAGAACAATTTGTCCAGAGTGTTTGGACCAACCATTGTTGGACATGGAATGGCAGAGCCCTCCCCAATGACCATTATGAGGGACACAAACATTCAGCCAATGGTCATAGGCAGAATGCTGTCGTTCCCTGCTGATTACTGGAAACGCCTCATCATGGTGGCGAGGGACCAAGTTATATCATCAGTTGTCGACGCCAACATCAATAGCGAGAGCCACAGTACAGACAGAGATCGTCTGTTTAAACCGCTGACTTCCCCTGAGCTGAGTAAATACCCCAAGACTCCTACCAGTGGTTCTCTTAAGGGCAGAATGAAGAATGCCTTCAACAATACtaACAGGGCAAAGACTGACCCGGGCAAAAATAAGTTCTTCACATCCCCCAACTGATATCATTGTGGCATAGACTGTTGGTATATTCATGAGTAACTAAAGCACTTCACATTTGGCTATCTTTTCAgtgtttaaaaatgttttgtatcATAACATGGAGTATAAGGGTTAGAATGGTGTACATTTTAGGAACCACACTAATGCATGAGAAACTTTAAATAAACTACATTATGAAACTGTT
>XM_036974264.1
ACTGGTTCAGCGCCGACAGTTTTTGTAAATGTTTGTGATGTTACTAGCGTGTAGGCTAAAATGTTAACATCAAATAGCATTGTTAAGAAGTTACATTATATTGCCGACCTGTAGGCCAGGTCTACTAAACACCACAGCTGTTTGTTGGACAGGCAACGGGATCGCGCTGGGTGGTCACGTCCACATATCCAGCAGCAGTAAAATGGGCGAAGCCTTTATCAGGGAGCTTCTCTCTCTGTGCCTTCAACGGATTGCTGTGGAGGAAAATGCAATGAACAACACTGAACTTGAGTTTATTGAGGTAGTAAATAACTACGATGCCACAAGGAAGAAATGGTTACATGCAGAGCTGGAGCTGAAGAGGCACAAGGCGCTACTGTTGAAGTCCGACATAGCCCAGGCTGCCCTGGAGGTCAAACTAAAACACTGTCGCAACCAGGTCGATGTGGAGATCAAGAAGCGCTACAAGGCTGAGGCAGACTTTCAGTACCTGCAGCGGCAGATGCAACTGATGTGTGACATACTGGTCCACGACAGCAAGTCCAATGCGTGTCTGAATGACGAGCAGAGATCTCTGCTGGCCAACTTCAACCACAGGGGAGCCAACGTCACCCAGCACAAGAGCAAACGATTATCTGTCATCGATGAGTCTTCATTCCTGTCTCACTCTGATATTAGTTACGATAGAACTGATGATGACATGGACCTGGATGTGACAGCTGTGAAACCACTTAAGTCGAGAGCAAGGGAAAAAAGGCGCTCCTCCATGGGACCGACTGTCGGTGCGCACGCAGCGAAGAGGGGAAGAGTAGGTGGCCGTTCAGACGATCTCCTTGAAAGAAGACCAATGGAAAAGGAAGTTGAGACTACGATTGTGACCGCGTCCGTCACAACCCCAGAGAGCGGAGGTCAAATTCACATGGTGATCGACATCACCCAGGAAACACCTGAGAAACTACCCAGGACTTACCGGAAGGAGCACCAGATTTCATCTGTTGGCGAGCAAACGTCCGTGTGGACTCCCAATGATGAAACCGCTGTTGAGCATGATACTACTGTGGAGCCGGACACCATGACAGAAATGGAGTCCACCACAGAGCCTAGATTTAACCAGGTGTTCACTCCCACTGTTAGCAAAACTTTGAGACACTACTTCCTGTCTAAAACGGTGATTCGTCCAGAAACGTGTGTTCCATGTGGGAAGAGGATCCGGTTTGGGAAGATGGCTGTGAAGTGCAGGGACTGCCGTGTGGTAGCTCATCCCGAATGTAAACCGAAGTGCCTAGAAAGCTGCTCTGCCTCATGTGGAGCTCATGGAGCTGAGGACACGTTAGAGAGCTTTGCCCCACCTACCCAGCCTAGGATCCCTCAGATTATTGTTCAGTGCGTGAATGAAATTGAGAAAAGGGGATTGGAGGAGAAAGGCATCTACCGTGTTCCTGGGGGTGAGCGTATGGTGAAGGCGCTGAGGGAGAGATACATTAATGGGAAAAGGCCGCTCATGCTCAGTAGAGTGGATGAGATCCACGTTGTCTGTGGACTTCTCAAGGACTTCCTGAGGAAACTGAAGGAGCCTCTCATCACCTTCAGGCTGCATAGAACCTTCATGGAGGCCTGTGAGATTCCAGATGATGACGACAGCGCAGCAATAATGTACCGAGCCATAGGGGATCTGCCTAAGCCCAACAGAGAGACACTGGCTTTCCTCATGCTTCATCTACAGAGAGTCATGCAGAGCCCCCTCTGTCAGATGGACAAGAACAATTTGTCCAGAGTGTTTGGACCAACCATTGTTGGACATGGAATGGCAGAGCCCTCCCCAATGACCATTATGAGGGACACAAACATTCAGCCAATGGTCATAGGCAGAATGCTGTCGTTCCCTGCTGATTACTGGAAACGCCTCATCATGGTGGCGAGGGACCAAGTTATATCATCAGTTGTCGACGCCAACATCAATAGCGAGAGCCACAGTACAGACAGAGATCGTCTGTTTAAACCGCTGACTTCCCCTGAGCTGAGTAAATACCCCAAGACTCCTACCAGTGGTTCTCTTAAGGGCAGAATGAAGAATGCCTTCAACAATACtaACAGGGCAAAGACTGACCCGGGCAAAAATAAGTTCTTCACATCCCCCAACTGATATCATTGTGGCATAGACTGTTGGTATATTCATGAGTAACTAAAGCACTTCACATTTGGCTATCTTTTCAgtgtttaaaaatgttttgtatcATAACATGGAGTATAAGGGTTAGAATGGTGTACATTTTAGGAACCACACTAATGCATGAGAAACTTTAAATAAACTACATTATGAAACTGTT

Function

NR:

description
rac GTPase-activating protein 1-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596995.2 False 2342 mRNA 0.47 17 45580103 45587403
XM_036974256.1 False 2285 mRNA 0.49 18 45580103 45587525
XM_036974264.1 True 2327 mRNA 0.48 17 45580103 45587671

Neighbor

gene id symbol gene type direction distance location
LOC110520026 tmbi1 coding downstream 13057 45539844 ~ 45567046 (-)
LOC110520023 LOC106586145 coding downstream 117335 45434956 ~ 45462768 (-)
LOC110520020 LOC106586142 coding downstream 147245 45400285 ~ 45432858 (-)
LOC110520019 LOC106586141 coding downstream 252823 45302405 ~ 45327280 (-)
si:ch211-136m16.8 LOC106586138 coding downstream 336716 45236500 ~ 45243387 (-)
LOC110520032 LOC106586150 coding upstream 243259 45830930 ~ 45845044 (-)
LOC110520035 LOC106586155 coding upstream 433299 46020970 ~ 46024407 (-)
LOC110520036 LOC106586156 coding upstream 443811 46031482 ~ 46034427 (-)
LOC110520037 pyr5 coding upstream 456269 46043940 ~ 46047859 (-)
LOC110504150 LOC106586158 coding upstream 490390 46078061 ~ 46335208 (-)
G263273 NA non-coding downstream 9611 45531611 ~ 45570492 (-)
G263293 NA non-coding downstream 72535 45507246 ~ 45507568 (-)
G263122 NA non-coding downstream 283650 45294739 ~ 45296453 (-)
G263133 NA non-coding downstream 319904 45255713 ~ 45260199 (-)
G263127 NA non-coding downstream 331283 45244750 ~ 45248820 (-)
G263332 NA non-coding upstream 3588 45591259 ~ 45591483 (-)
G263373 NA non-coding upstream 35316 45622987 ~ 45623447 (-)
G263640 NA non-coding upstream 246635 45834306 ~ 45834950 (-)
G263644 NA non-coding upstream 256412 45844083 ~ 45844346 (-)
G264287 NA non-coding upstream 296545 45884216 ~ 45884464 (-)
G263274 NA other downstream 42561 45536332 ~ 45537542 (-)
LOC110520012 cssa21h2orf88 other downstream 475840 45099333 ~ 45104286 (-)
G262993 NA other downstream 567854 45010172 ~ 45012249 (-)
G261580 NA other downstream 1548598 43989524 ~ 44031505 (-)
col6a3 LOC106598405 other downstream 3264745 42291728 ~ 42329627 (-)
G265988 NA other upstream 2011547 47599218 ~ 47599815 (-)
LOC110505248 gcg other upstream 2444376 48032036 ~ 48033434 (-)
G268310 NA other upstream 3907806 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 3914745 49494001 ~ 49503025 (-)
LOC110520112 LOC106586230 other upstream 3976177 49563841 ~ 49608114 (-)

Expression


Co-expression Network