LOC110520032 (LOC106586150)


Basic Information

Item Value
gene id LOC110520032
gene name LOC106586150
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45830930 ~ 45845044 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597001.2
TTATCTAGGCCACAGTATTGTGATCTATTTAGCCATGGGCGAGGTCGGCGGGTTTTATTTGACAATTTCTGTGATTCAGAGGGCTACAGAAAGAGTGCTGGAAACGCCTATGCTTATGTATTTCTGACGTTGGTGTGTTTTATTTGAGGCGGAGCTAGAGACCACTGACACGTAAGGATCCTGCATTAATTCCAAGGGAGAAGCTACATAGGCCTACATCTTTTTAGTCGAGAAGAATGTCCTTTTTAAATACAACCAGCTGCTAATGTTCTCTATTCGGATTGATGCATAAAATTACCCAACGAGTCGCACATTAGGGTGTGTGTAGGCTGGCGACGTAGTCTATAGTCAACGTTGAAAATGAGATTTGCAATGTTTATTTCTCTGCTGAGGCCGATCGGCCCGGTTATTATCGGTGTTTCTTTGGGATTTACCTTGAGTTTGCTTAGTGTCAATTGGGTAGAGGAAACTTGTGTCCTCGACGGGAAAGCGAGTGAAGAAATACGTTTGGCCCAAGATGGGAATTCAAAAGGAGCGAGGAGACCCAATTCGATATCGACTGTGGATGCCGAGGAAGATTTTGAGCCAAGAATAGTGCCATATAAACCAGTCCAACAAAGCCAAACAAAGCAACTTTTTCGGGCTAAGTACATCAGTACAGAGCTGGGGATCCGGCAGCGCCTCTTTGTAGGGATCCTGACGTCCAAAAGCACCATCAACACATTGGGAGTGGCCGTGAACCGCACCATCAGCCACCACCTGGACACTGTGGTCTTCTTCACCGGCATGCGCAACCGCAAAGTGCCCCACGGCATGTTCGTGGTCACCCATGGGGACGAGAGGCTCATATGGAACATTTTCCAGACCATCAAGTACATCTTGGAGCACTACGTCCATGAGTATGACTGGTTCTACCTGGCCCAGGACGACACCTACACCGAGGCAGACCGGATCCAACAGCTGGTGGACCACCTGAGCATAGACCGGGAGCTTTACATGGGCAGCCCTGAGGAGTTTATaggtggggagatggaggggaggtaCTGCTACGGTGGGTTCGGATACCTCCTGTCCCGTACCCTGCTGCTCCGGCTCAAACCCTTCCTGGAGAACTGTAGGAATGACATCCTGAGCGCCAGGCCTGACGAGTGGCTGGGCAGATGCATCATTGATTATGCCAACACCAACTGTGTGGCTGAGCATGAGggGCTGCAGTACTACCATTATGAGATGGGCAAGAACTCGGATCCAAGTAAGGTGAAGAATGTGCAGTTTAATAATGCCTTGACTGTCCACCCGGTATCTGACCCTGAGCAGATGTACAGACTACACAAACACTTCACTGAAATCGAACTTCGGAGGACATACGATGAGATTGAGAAGTTGCAGGCAGAGATAAAGAATGTGAGCAAAGTGGCTTTTGATGGCAACCGGAGCGCCCAGTGGCCCGTTGGGATCAATCCTACGTTTGAGCCGAAGTCACGTTTTGAGGTCATCCGATGGGACTACTTCACAGAGGAGCAGGTCTATTCATGCATTGACGGCTCCCCCAAGTGTGAACTGCGTGGCATTGATCGGTTGGACGTGGCTGACGTCATCGAGAGAGCCATGGGGGAGCTGAACAAGAAGTACAAGCCTGTCCTCCACCTGAAGAAGCAGCAGCTGATCAACGGCTACCGCCGCTTCGACCCCACTCGGGGCATGGAGTACACCCTGGACCTGCAGCTGGAGGTGGTCAATCAGAAGGGCCGCAGTCGCTCCATCACCAAGAGGGTCCACCTGGTGCGTCCCCTGAGTCGCATCGAGATCATCCCCATGCCTTACGTCACAGAGGCCACCAGGGTTCACGTCATCTTGCCGTTGACTTTTCAGGAACGGGGTGCCGTCAACCATTTTCTAGAAGTGTTTGCCACAAATTTGTTTGAGACCAGTGACAACGCCATCTTGACTTTACTGTTTATCTACGACCCATTCGAGGCCCAGCAGGTCAACCAGAATGACATATTCGCCAGTGTTAAAGCGCAGATCAATGCATACGAACGCAAGTATCCGGCAGTGAAGATCCTGTGGATAAGTGTCAAGACAGAAACCCCTTCTCAAATCAAATTCATGGACATCATTTCCAAGAAGCACCCAGTAGACACGCTGTTCTTCATCACCAACGTCAACACCAACGTCAACTCCGAGTTCCTCAACCGTTGCCGCATGAACTCCATCAACAACTGGCAGGTATTCTTCCCAATCCACTTCCAGGACTACAACCCAGACATTGCCTTCCACAACCAGGAGCCCCCACCCACAGTAGACCTGGTCAAGGACGCCGGACACTTTGACCGCAGTTCTTTCGAGGAGGCGTGCTTCTACAACTCCGACTACATGGTGACGCGCACGCGCATGGCCTCCGACGTGCAGGAGAACGAGGAGATCATGGAGACCTTGGATATCTATGACATGTTTGTCAGGTACTCCACCCTGCATGTGTTCAGGGCTGTGGAGCCGGCTCTGCACCAGAAGTACCACTACCAGGCCTGTAACCCGCAGCTCAGTGAGGACATCTACCACAGGTGTGTCCAGAGCAACCTGGATGGCCTGGGATCCCGTTCCCAGCTCGCCATGCTGTTATTTGAACAAGAGCAAGGAAATAGCACTTGATCACCAGCCCCCTTAGAAACTTGACctagtatgtgtgtgagtgtgatgtgtgtatgcgtgcgtgtttGTTTTAAAACTAATGCAGTACATTCCTAAGCGGAAACTTTTTTTAAACTAAATGTTTACAATAAAAATGTGCTGTCCGTACAGAAAACTATGGTGGAACCAATTGTGGTTTAAACATTCGGATTTGGTGGTCATGCTGGTCATCTCATTATTTTAACATGTTACAAAAGTTCTACATACCTTTTGTGGCTCTTGAGGGTATGGCTTTAAACCTGCACAGCTTTTGATACTTGGTCATTTGCAGTTTAGTAATCACTACTAAAGCACATGTGtgccttttctttcttttttttttatttccgtCAGTCCTCTTGTATTTTCATGTCCGTTATCATATCAAGCAAAATAAGTAGAGATGTTTTACATTGTATACGTTTTATCAATATTTGAGTCCCTTCCTTTCACATTACACTTCTCACATTTGAATGAATGAGCTGGCATCTGCAATATAGATTCACTCTACTCGCATGTTAACGGGAAGGAAGCTTTACGGCACTGACGTCATCAGATGCAGAATGCGATTACTGTGGGGTTGAGAGGATTGGATGGTATGTGTTGGTGCTGTGGGTCCCCATAGGTGACCTCACAAACAAGCCTGTAGATGTAGAGCCTCTTCAGGAGGttacagtaaaaaaaatagaACGATATGATTGTCTCTTCTTTAGAATAGGGAATTATGTAATCTTTATCCATTACATTTATATATGCAACGTTCTGAATGTTTTAACTCTGAATACACCCCTGGTCA

Function

NR:

description
chondroitin sulfate synthase 2-like

GO: NA

KEGG:

id description
K00747 CHPF; chondroitin polymerizing factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597001.2 True 3466 mRNA 0.48 4 45830930 45845044

Neighbor

gene id symbol gene type direction distance location
si:ch1073-416j23.1 LOC106586148 coding downstream 243259 45580103 ~ 45587671 (-)
LOC110520026 tmbi1 coding downstream 263884 45539844 ~ 45567046 (-)
LOC110520023 LOC106586145 coding downstream 368162 45434956 ~ 45462768 (-)
LOC110520020 LOC106586142 coding downstream 398072 45400285 ~ 45432858 (-)
LOC110520019 LOC106586141 coding downstream 503650 45302405 ~ 45327280 (-)
LOC110520035 LOC106586155 coding upstream 175926 46020970 ~ 46024407 (-)
LOC110520036 LOC106586156 coding upstream 186438 46031482 ~ 46034427 (-)
LOC110520037 pyr5 coding upstream 198896 46043940 ~ 46047859 (-)
LOC110504150 LOC106586158 coding upstream 233017 46078061 ~ 46335208 (-)
LOC110520042 LOC106586165 coding upstream 701793 46546837 ~ 46599080 (-)
G263373 NA non-coding downstream 207483 45622987 ~ 45623447 (-)
G263332 NA non-coding downstream 239447 45591259 ~ 45591483 (-)
G263273 NA non-coding downstream 260438 45531611 ~ 45570492 (-)
G263293 NA non-coding downstream 323362 45507246 ~ 45507568 (-)
G263122 NA non-coding downstream 534477 45294739 ~ 45296453 (-)
G264287 NA non-coding upstream 39172 45884216 ~ 45884464 (-)
G264322 NA non-coding upstream 87324 45932368 ~ 45933032 (-)
G264323 NA non-coding upstream 88002 45933046 ~ 45933276 (-)
G264324 NA non-coding upstream 88244 45933288 ~ 45933769 (-)
G264326 NA non-coding upstream 91477 45936521 ~ 45938430 (-)
G263274 NA other downstream 293388 45536332 ~ 45537542 (-)
LOC110520012 cssa21h2orf88 other downstream 726667 45099333 ~ 45104286 (-)
G262993 NA other downstream 818681 45010172 ~ 45012249 (-)
G261580 NA other downstream 1799425 43989524 ~ 44031505 (-)
col6a3 LOC106598405 other downstream 3515572 42291728 ~ 42329627 (-)
G265988 NA other upstream 1754174 47599218 ~ 47599815 (-)
LOC110505248 gcg other upstream 2187003 48032036 ~ 48033434 (-)
G268310 NA other upstream 3650433 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 3657372 49494001 ~ 49503025 (-)
LOC110520112 LOC106586230 other upstream 3718804 49563841 ~ 49608114 (-)

Expression


Co-expression Network