LOC110520035 (LOC106586155)


Basic Information

Item Value
gene id LOC110520035
gene name LOC106586155
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 46020970 ~ 46024407 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597004.2
aggCCTGCTCTCAGGTCTCATATCGTTTGCTCCTGTTATCGCACCATCGGGAAACGAATCATAACTTGAAATCCGCGCGGGTAACTGTAAAGGAATTTTCGTAAAAATATTTCATTTGAATTAATGCATAAGGATTTACGCAAAATGCAATTATGCACGCGTAAACTAGGCATTATCAAGTTGGGACTCGACCCATAATGTGTATTGTAATCGAACATGTAATGTTTATTATGTCAGTTTAATTATTGCCATGTGTTGTGATTAGAAATCCCAAAAGGCCTACTATTGAGTTAGTGTAAGCAGTGGAAATCCTTTTGGAATGCAGGCATATGCAAAATATACCATTTGCTGTACATTTCGCATGTCCATGGTATGTGCCAACTAATAACGTTTTTTTGCCTTAAATACTGTTTGACTGTCATCGACTTTTTAATGCACTTACTCACTGAATATTTTCACAGCTAATCTCAATAATGTCATGTACCCCTGCacatgtacccccgcacattgactctgtacccgtgccccctgtatatagcctcgtgaTTGTTATGTAATTTCCTTGTGTTACTTTTGataatttctgtttaaaaaaaagtttactttagtttattctgtaaatattttcttaactctatttcttgaactgcaatgGTAGTTAatagcttgtaagtaagcatttcaaggtaaggtctactacacctgttgtattcggcgcatgtgacaaatacaatacaaTTTGATCTACCCACAATGTATCTTCTTCATATTCCTTAGGCTTACAACAGAGGTAGGGGGGGTGACGACGACGACAAATACATTATTTTTATACTGAGTCTTTGTATTATTATTGTTTATCATTTTTATtgtttgttgttattattattattaggcctattgttgttattattatgctATTATACATGGAATTTGTGGATGGGGATTTGTGAGGTATAGCTTGGACAATGTCTTGGAAGAATTGCTTTTAATTAATGGTGAAATGTTCTGTCATGGCTTTACGTCAACAAACATCTTAGCCTACAAGACATGGTTTTAAATTCACAACCTCATTACAAGACGATTGTATACAGCCTTATACCTATAAACAGAAGGTCGTGGATACGATGTTCTTCTTTTCCCAGGTGCATTGAGGCATGTTCTTAaggtaaatatttttttccaaCATGAAATAGGCTTTTGTGTTTGCAAAGGGGTAAAGAGGCGGAAAAGAGAGAGGCTCTGAACTGGCTTCCATGTCATACACTTAAATTCTCCATAGAAACTCTGATCTTAACGCGGAAACTTTATTAAACCCTGATGGTGGATTGATAAGACCGAATTTCTCTCGGCTTCATTTTATTGTGGAGACCGGGGAGGGATGACAGAGGTAAATTGCTATTTTAATTAAAGCAATGCACCAGAGGAAATTGCTGTCTGAATATTGTCTCAGAGATGGGGTTTGTGACAGTTGCCTGGAAACTTCAATCTGTCCCACATTTATTCCAGATCACAGTTATAAGATAAAGTTTAATACAAATCTTTGCCCGAATGAAATCCAACCCTTTCTTGAACAACAGCTACAATGAAACAGAACTGCGGAGGAAACGTTATGTTTAACATGTATCTCTCAGATCCAACAGAACAACTGTTGAAAGAAAGCAAAAGTGGATCCTGGAGTCCCTCAAATACAGGGGCGCAAAAAGGTAGTGGACAGATTCAGCTATGGCAGTTTCTCCTCGAACTCCTGTCAGACAGCGCCAACATGTCCTGCATTACCTGGGAAGGGACGAACGGAGAATTCAAGCTAATTGACCCGGATGAGGTGGCCCGGCGATGGGGCGAGCGCAAAAGCAAGCCCAACATGAACTACGACAAACTCAGCCGCGCATTGCGGTACTACTACGACAAAAACATCATGACAAAGGTCCATGGGAAGCGATATGCTTACAAGTTCGACTTTCACGGCTTGGCCCAGGTGTGTCAACCCTCAACAACAGAGCAAGCGCTTTATAAATTCCAGAGTAATTTTGCCCCTATTCCCTTTTCAGGGATTTCCAAGCTAAGCCTCGTTGGTCCAGGCGTTGGTCCGTCCGGATTCTCCTATTGGCCGGGTTCGCCACCCACTCTCTACCACAGTCACAACCTCCAACCCCCGGGACCATTTGGTGCTGTGTCCGCTTCGCACATCAACTGtgtcaacaacatcaacaacctGAATAATATCAATAACCACTACAATTGACTACTATTAATCCACCAATGAGGCCTAATCATAATTATTGACGATTGATGTAGTTAAAAGCGTGCCTTTTTGGATTAGGCCTAATGATGATTTTTCCTTTCGAAATGTTATCTTGTGAACCCAAGACATTGTCTGATCCTAACTGAATATGCCAAGGCGCAATTCATTAAACATTTTGTGCAATATTTCAAATGTAATAACATGCGTTTTCAGATAGGCTGTGTATTTTAGACTAAACCCAGATTAAGAA

Function

NR:

description
protein FEV-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09437 FEV; ETS oncogene family protein FEV

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597004.2 True 2492 mRNA 0.40 3 46020970 46024407

Neighbor

gene id symbol gene type direction distance location
LOC110520032 LOC106586150 coding downstream 175926 45830930 ~ 45845044 (-)
si:ch1073-416j23.1 LOC106586148 coding downstream 433299 45580103 ~ 45587671 (-)
LOC110520026 tmbi1 coding downstream 453924 45539844 ~ 45567046 (-)
LOC110520023 LOC106586145 coding downstream 558202 45434956 ~ 45462768 (-)
LOC110520020 LOC106586142 coding downstream 588112 45400285 ~ 45432858 (-)
LOC110520036 LOC106586156 coding upstream 7075 46031482 ~ 46034427 (-)
LOC110520037 pyr5 coding upstream 19533 46043940 ~ 46047859 (-)
LOC110504150 LOC106586158 coding upstream 53654 46078061 ~ 46335208 (-)
LOC110520042 LOC106586165 coding upstream 522430 46546837 ~ 46599080 (-)
rprma rprm coding upstream 694276 46718683 ~ 46721823 (-)
G264371 LOC106586154 non-coding downstream 10348 46008328 ~ 46010622 (-)
G264374 NA non-coding downstream 14938 46005751 ~ 46006032 (-)
G264372 NA non-coding downstream 17262 46002939 ~ 46003708 (-)
G264367 NA non-coding downstream 25089 45995617 ~ 45995881 (-)
G264356 NA non-coding downstream 30400 45990327 ~ 45990570 (-)
G264361 NA non-coding upstream 23717 46048124 ~ 46055954 (-)
G264390 NA non-coding upstream 35071 46059478 ~ 46059722 (-)
G264396 NA non-coding upstream 43494 46067901 ~ 46068102 (-)
G264398 NA non-coding upstream 45179 46069586 ~ 46069807 (-)
G264400 NA non-coding upstream 47127 46071534 ~ 46071818 (-)
G263274 NA other downstream 483428 45536332 ~ 45537542 (-)
LOC110520012 cssa21h2orf88 other downstream 916707 45099333 ~ 45104286 (-)
G262993 NA other downstream 1008721 45010172 ~ 45012249 (-)
G261580 NA other downstream 1989465 43989524 ~ 44031505 (-)
col6a3 LOC106598405 other downstream 3705612 42291728 ~ 42329627 (-)
G265988 NA other upstream 1574811 47599218 ~ 47599815 (-)
LOC110505248 gcg other upstream 2007640 48032036 ~ 48033434 (-)
G268310 NA other upstream 3471070 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 3478009 49494001 ~ 49503025 (-)
LOC110520112 LOC106586230 other upstream 3539441 49563841 ~ 49608114 (-)

Expression


Co-expression Network