LOC110520036 (LOC106586156)


Basic Information

Item Value
gene id LOC110520036
gene name LOC106586156
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 46031482 ~ 46034427 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597006.2
GTGCATTCAGTTTGCCGCTGCTGAGTATGCAAGGCTTGTGCGAAAGCGGCATTAAACGAGGGGCTTGGTAGTATAAAAACAGAAGTGGGGGCCTAGGACTCGATATTGTTACTCTGGATCTGTCCCACCTCAGTACTCTCTAGAGCAACCCCACGGTGGAAATAGCAACCATGAACACTCAGCAGATGGAGCAGATGGGCCAGTTCAAGATCACTGTCTGGGAGGAGGAGAACTTCCAGGGCAAGCGTTGTGAGTTCCTGCTGGAGTGTCAGAACATCATGGATAGGGGATTCCACAAGATCCGCTCCATCAAGGTCGAGAACGGACCctggttgggttatgagtACCCTGAGTTCCAGGGCCAGCAGTTTATCCTTGAGAAGGGAGACTATCCACGTTACGAGGCTTGGAGCGGAAACAGCAGTTACAGAACCGAGCACATGCTTTCTTTTAGACCTATCAAGTGCGCTAACCACAGTGACAGTAAAGTGACTCTGTACGAGTGTGAAGACTTCCAGGGACGCAAGTTCGAGATGTGTGATGACTACCCCTCTCTACAGGCTATGGGCTGGTGTAGCAAGGAGGTGCCCTCAATCAAAGTCAACTCCGGAGCGTGGGTGGCCTATCAGTTCCCCGGTTACCGTGGTTACCAGTACatcctggagagagacagacaccagggAGAGTACAGACACTACAACGAGTACAGCACTCAGGCTCACACCAACCAGGTCCAGTCTATCCGCAGAATCCAGCACTAAGTCCACTTGACACTATCCTCCAGCGGCTACCATGTACCGACCATGCCATGTATTAAAATAGGCAATAAAGGCTTTATTCAAACTACGGAAA

Function

NR:

description
PREDICTED: beta-crystallin A2-like

GO: NA

KEGG:

id description
K23482 CRYB; beta-crystallin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597006.2 True 852 mRNA 0.51 5 46031482 46034427

Neighbor

gene id symbol gene type direction distance location
LOC110520035 LOC106586155 coding downstream 7075 46020970 ~ 46024407 (-)
LOC110520032 LOC106586150 coding downstream 186438 45830930 ~ 45845044 (-)
si:ch1073-416j23.1 LOC106586148 coding downstream 443811 45580103 ~ 45587671 (-)
LOC110520026 tmbi1 coding downstream 464436 45539844 ~ 45567046 (-)
LOC110520023 LOC106586145 coding downstream 568714 45434956 ~ 45462768 (-)
LOC110520037 pyr5 coding upstream 9513 46043940 ~ 46047859 (-)
LOC110504150 LOC106586158 coding upstream 43634 46078061 ~ 46335208 (-)
LOC110520042 LOC106586165 coding upstream 512410 46546837 ~ 46599080 (-)
rprma rprm coding upstream 684256 46718683 ~ 46721823 (-)
LOC110520047 LOC106586168 coding upstream 967380 47001807 ~ 47007117 (-)
G264371 LOC106586154 non-coding downstream 20860 46008328 ~ 46010622 (-)
G264374 NA non-coding downstream 25450 46005751 ~ 46006032 (-)
G264372 NA non-coding downstream 27774 46002939 ~ 46003708 (-)
G264367 NA non-coding downstream 35601 45995617 ~ 45995881 (-)
G264356 NA non-coding downstream 40912 45990327 ~ 45990570 (-)
G264361 NA non-coding upstream 13697 46048124 ~ 46055954 (-)
G264390 NA non-coding upstream 25051 46059478 ~ 46059722 (-)
G264396 NA non-coding upstream 33474 46067901 ~ 46068102 (-)
G264398 NA non-coding upstream 35159 46069586 ~ 46069807 (-)
G264400 NA non-coding upstream 37107 46071534 ~ 46071818 (-)
G263274 NA other downstream 493940 45536332 ~ 45537542 (-)
LOC110520012 cssa21h2orf88 other downstream 927219 45099333 ~ 45104286 (-)
G262993 NA other downstream 1019233 45010172 ~ 45012249 (-)
G261580 NA other downstream 1999977 43989524 ~ 44031505 (-)
col6a3 LOC106598405 other downstream 3716124 42291728 ~ 42329627 (-)
G265988 NA other upstream 1564791 47599218 ~ 47599815 (-)
LOC110505248 gcg other upstream 1997620 48032036 ~ 48033434 (-)
G268310 NA other upstream 3461050 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 3467989 49494001 ~ 49503025 (-)
LOC110520112 LOC106586230 other upstream 3529421 49563841 ~ 49608114 (-)

Expression


Co-expression Network