LOC110520037 (pyr5)


Basic Information

Item Value
gene id LOC110520037
gene name pyr5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 46043940 ~ 46047859 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597007.2
TGTAGGCAATGTGTgccgtttttaaatgtatgtagttctgtccttgagctgttcttgtttattcatgttctgtattgtgtattgctttcgcaacagctaacaGGGATCCTAATCAAATACCACATGTGTACAATTATCTTGCAACGCTCGCATACGCAACGTGGCCGGTGTGGTTTGCTTGTGATGATTAACGATTTATAATATGGCGGGAGCAACGCAATAATGTAAAAACGACATGTCCCATAGTTCCGCGCGGCATTTCGTAAGCGGAACATATCTATGTTTGCAAAGAGACGAGAGCATTGGACGAGACTGCTGTCTGTTGATATTAGTAAAAACTTGAAAATGGAAAACGATTGCCTTGAAAGTTTAATCTTAAAGTTACATGATGTTCAGGCCGTGAAATTCGGAACGTTCACGCTGAAGAGTGGAATAACATCGCCGATTTATTTTGATCTCAGAGTTATTGTTTCCTACCCATCGCTTATGAACCAGgTATCAATGTATCTTTACCAACGCGCCAAAGATGAGGACTTGAAATACAACTCATTGTGTGGTGTACCATACACTGCTCTGCCCCTGGCTACAATCATCTGCTCCAAACACGAGCTGCCTATGCTGATCCGAAGAAAAGAAGCCAAAGACTATGGAACTAAGAAGATTATAGAGGGGACCATTCACCCTGGAGACACTTGTCTGATCATCGAGGATGTTGTGACCAGCGGCAGCAGCGTCATGGAGACGGCCCTGGTGCTTCAGGCGGAGGGTTTAAAGGTCACCGATACCATCGTGCTGATGGACAGGGAGCAGGGAGGTAGGGCCATGCTGGCCAAGAAGGGCATTGCGCTCCACTCCGTCATCTCCGTCTCCAAACTCCTCGACGTTCTGCTCCAGGCGGACCGCATCGATTATCCCACCGCCCAGAGCGTGCGCAGGTTCATCCAGGAGAACAACACCTACAAGCCctcaggggaggaggagaagaacggCTCGCCTGTGGCTAAGAAGCCCGGCAAGCTGGCGGAGTTGACCTATGGCGACAGGGCCCAGCTCCGAACCACACACCCTCTGGCTGCCCAGCTCTTCAGGTTGATGGAGGAGAAGaagaccaacctgtgtgtgtcgGCGGACGTGACAGGCTGCGAGGATCTGCTGCAGCTGGCTGACTCTCTGGGGCCTCAGATGTGCGTGCTGAAGACTCACGTGGACATCCTGCGGGACTTCAGCCCAGCCTTCATCCAGACCCTCAAGGACCTGGCCCACAAACACAACTTCCTCATCTTTGAGGACCGCAAGTTTGCTGACATCGGGAACACAGTCAAGCACCAGTATGAAGGTGGGCTCTACCAGATCGCCTCGTGGTCTCATATGGTGAATGCACATGCGGTGCCAGGCCCTGGGGTGGTAGAGGGGCTCAGTGTGGTGGGCCTCCCACTGGACCGCGGCTGTCTCCTCATAGCTCAGATGAGCTCCCAGGGTTCCCTAGCAACAGGGGACTACACGCAGGCTGTGGTGAAAATGGCTGAGGAGCACTCTGACTTTGTGTTTGGGTTCATCTCTGGCTCCAAGATCAGCAGCAAGCCTGAATTCCTACATATGACTCCAGGGGTGCAGATGCAGTCAGAAGGAGACGGTCTTGGCCAGCAGTACTCCAGTCCTGATGATGTGATCTATAAAAAAGAATCGGACGTCATCATTGTTGGCCGTGGTATCCTGGGGGCCTCTGATAGGGTGAAGGCTGCCACAGAGTACAGAGAGGCCGGCTGGAACGCCTACGTCAAGAGACTCACCGCGTCAAGACAATGAAAAGTCAAACAATGGGTGggggtttgcatcccaaatggcaccctattccccgtatagtgcactacttttgactaggaccCTATGggatttggtcaaaagtagtacactatagtgGTATGGATGCCATTTGGGCTACAGACAGACTAGAGCAGGCACCACATCGACAATGTGAAACCATGATTATTCCCTCCAAACAGCTGCTGGGGCCTGTTCTTACTCTTATGGCTTCTCGTTTATAACCCTTGCTTGCTAAATCAGCTGAACTGCGACAAATGCTCATCTTTGGCAACAGGGACACATTTCAGGATTTTTCCCCCCACCCTCAGTGTTATATGTATATGATCATTTTGAAACATTTCAAATTGGATTATTTGTGTTAACCCATAATATGGAACTGTGAAATGAATTCAGTAGATGCATTGGCTGTAATGGTCGGTGTTCTTTGAAGTCACTTTAAACATCTCTAGCCTAGGATTCTGTTCCTTTGCCTCAAGGGCGGTTTCTATAGAAGAACACGGTGGAGGCTAGGGCTGCTATCTTTGTGATGGAGAACAGTGGAGAGATTCAGTTTACCAAACAATCCTTGGCATTGTGTATTGGTTCATCGACATTACAACAATCACGTGTTCACAACAGTAGTTATTTGAAGCCAATGTGTGACGAACCACGTTAGTCCATAAACCTCTAGTGGTTCTGGGTGATGTGCCCTAATCATTAATAAACAGTGAATGTGCATG

Function

NR:

description
uridine 5'-monophosphate synthase-like

GO:

id name namespace
GO:0044205 'de novo' UMP biosynthetic process biological_process
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process biological_process
GO:0004588 orotate phosphoribosyltransferase activity molecular_function
GO:0004590 orotidine-5'-phosphate decarboxylase activity molecular_function

KEGG:

id description
K13421 UMPS; uridine monophosphate synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597007.2 True 2543 mRNA 0.49 6 46043940 46047859

Neighbor

gene id symbol gene type direction distance location
LOC110520036 LOC106586156 coding downstream 9513 46031482 ~ 46034427 (-)
LOC110520035 LOC106586155 coding downstream 19533 46020970 ~ 46024407 (-)
LOC110520032 LOC106586150 coding downstream 198896 45830930 ~ 45845044 (-)
si:ch1073-416j23.1 LOC106586148 coding downstream 456269 45580103 ~ 45587671 (-)
LOC110520026 tmbi1 coding downstream 476894 45539844 ~ 45567046 (-)
LOC110504150 LOC106586158 coding upstream 30202 46078061 ~ 46335208 (-)
LOC110520042 LOC106586165 coding upstream 498978 46546837 ~ 46599080 (-)
rprma rprm coding upstream 670824 46718683 ~ 46721823 (-)
LOC110520047 LOC106586168 coding upstream 953948 47001807 ~ 47007117 (-)
LOC110520049 LOC106586170 coding upstream 1090507 47138366 ~ 47145477 (-)
G264371 LOC106586154 non-coding downstream 33318 46008328 ~ 46010622 (-)
G264374 NA non-coding downstream 37908 46005751 ~ 46006032 (-)
G264372 NA non-coding downstream 40232 46002939 ~ 46003708 (-)
G264367 NA non-coding downstream 48059 45995617 ~ 45995881 (-)
G264356 NA non-coding downstream 53370 45990327 ~ 45990570 (-)
G264361 NA non-coding upstream 265 46048124 ~ 46055954 (-)
G264390 NA non-coding upstream 11619 46059478 ~ 46059722 (-)
G264396 NA non-coding upstream 20042 46067901 ~ 46068102 (-)
G264398 NA non-coding upstream 21727 46069586 ~ 46069807 (-)
G264400 NA non-coding upstream 23675 46071534 ~ 46071818 (-)
G263274 NA other downstream 506398 45536332 ~ 45537542 (-)
LOC110520012 cssa21h2orf88 other downstream 939677 45099333 ~ 45104286 (-)
G262993 NA other downstream 1031691 45010172 ~ 45012249 (-)
G261580 NA other downstream 2012435 43989524 ~ 44031505 (-)
col6a3 LOC106598405 other downstream 3728582 42291728 ~ 42329627 (-)
G265988 NA other upstream 1551359 47599218 ~ 47599815 (-)
LOC110505248 gcg other upstream 1984188 48032036 ~ 48033434 (-)
G268310 NA other upstream 3447618 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 3454557 49494001 ~ 49503025 (-)
LOC110520112 LOC106586230 other upstream 3515989 49563841 ~ 49608114 (-)

Expression


Co-expression Network