LOC110520047 (LOC106586168)


Basic Information

Item Value
gene id LOC110520047
gene name LOC106586168
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47001807 ~ 47007117 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597025.2
CTCTGAGGAAGTCGTATAGATTGCTTGGTATTGTAGGCTATACGCTCGCTCACACATTGGAGCTTTTTACAGAATTGAAGAAGACTATCTACATGCTTTATGCATGGATTGACAACCACGTTTCTGGTGTGAAAGAAGGGGACGAGTCCAGAAAAGAGACTCTTTCTTGAATCCTGACCCCATACACCTCCAGACAACATTGTCTATTTCAAGTGTCACCGAAAAAACAGTCCCAAGACCAAAGCCATGCCCTGCGTTCAGGCTCAGTATGGGTCATCACCGCAAGGAGCCAGCCCCGCTTCGCAGAGCTACAGCTACCACACCGCTGGAGAATACAACTGCGACTTCTTAACACCTGAGTTTGTTAAGTTTAGTATGGACCTGACCAACACTGAGATCACAGCTACTACTTCTCTCCCTAGTTTCAGCACATTCATTGACAACTATAGCACCAGTTACGACGTTAAACCGCCCTGTCTATATCAAATGCCGCATTCTGGAGAGCAGTCCTCCATCAAAGTCGAGGACGTCCAGATGCACAGCTATCATCAGCAGAGCCATTTGCCACCTCAGTCGGAAGAGATGATGACCCACTCCGGGTCAATTTACTTCAAACCCTCCTCACCTCACGCCCCAACCACACCAAACTTCCAGGTTCAGCCCAATCACATGTGGGAGGACCCTGGGTCCCTCCACAGTTTCCACCAGAACTATGTGGCTGCGACCTCTCATATGATAGACCAGCGCAAAAACCCGGTGTCAAGGCTGTCACTATTCTCCTTCAAACAGTCCCCTCCTGGTACCCCTGTGTCGAGTTGCCAGATGCGATTCGATGGTCCACTGCACGTCTCCATGAACCACGACAACCCAGGGGCACACCGAGGCTTAGACAGCCAGAGCTTCGCGGTACCCAGTGCTCTAAGAAAACAGGCCGGCTTAGCCTTCCCCCACTCCCTTCAGCTCGGCCATGGACACCAGTTGATGGACAGCCAAGTCCATTCGCCCCCGTCCCGCGGTTCACCGTCAAATGAGGGTCTGTGCGCAGTGTGTGGGGACAACGCTGCTTGCCAGCATTATGGAGTGAGAACATGCGAGGGTTGCAAAGGATTTTTTAAGCGCACTGTTCAGAAAAATGCTAAATACGTGTGTTTAGCGAACAAAAATTGTCCTGTCGATAAACGCCGAAGAAACCGTTGCCAATACTGCCGTTTCCAGAAGTGCATGGTTGTCGGAATGGTCAAAGAGGTTGTCCGGACTGCTAATCTAAAGGGTCGAAGAGGCCGTCTTCCCTCCAAACCTAAAAGTCCCCAAGACGCCTCACCACCCTCGCCGCCTGTCAGTCTCATAAGTGCCCTTGTTAGGTCCCATGTCGATTCCAACCCGTCCATGTCTGGCTTGGACTATTCAAGATTTCAGTCTAACCCTGACTACCAAATGAGTGGAGACGACACCCAGCACATCCAGCAGTTCTATGATCTCCTGACGGGTTCCATGGAGATTATCCGAGGTTGGGCGGAAAAGATCCCTGGGTTTTCTGATCTTCCGAAGCAGGATCAAGATCTCCTTTTCGAATCAGCCTTTCTGGAACTTTTTGTTCTGCGGCTGGCATACAGGTCCAACCCAGTGGAAGGCAAACTCATTTTTTGCAACGGGGTGGTCTTGCACAGGCTGCAGTGCGTCCGAGGATTTGGGGAATGGATAGACTCGATTGTGGAGTTTTCCTCTAGCTTGCAGAGCATGAACATCGACATATCAGCATTCTCCTGCATCGCCGCTCTTGCTATGGTAACAGAGAGGCATGGGCTTAAGGAACCCAAGAGGGTTGAAGAACTTCAAAACAAGATAGTGAACTGCCTCAAAGACCAAGTGACATTCAATGGCGGAGGCTTGACTCGTCCGAACTACTTGTCAAAACTTTTGGGAAAACTCCCTGAACTTCGCACGCTATGTACACAAGGTCTGCAGCGTATCTTCTACTTAAAACTCGAAGACTTGGTTCCTCCGCCAGCAATAATTGACAAACTTTTCCTCGACACTCTACCTTTTTAAATGGACTTTAAAACGGACTTTTAATGAGACCTCAAAGAACTTCCACAGACTCTGTTTGAGTCAGCCTAACACATTTTTTTTAGATTTTAACTCTGAATATTTCCAAGCTCCCTAGTACAATCCCCTACATCCTGATCAAGGATCCATGAAATAGATACAAAGAAGAGTGAGAAAAAATTGGCCTCAGAAAACCCACTGATGTTCGATTTTTTTATAGGCCTAATCCCCAGTATAGCCATTCGGGGAAAGTCTCCAAGGCCAATTCTCGACCAAGTTAAAAAACTTTCTTGCAACTCTTAGCCTATTTTCCTTGTTGTTGACCAAACATCTGTTCCATTGATAACGCATACTGATATGTAATATATTTCATTTATAAATATGCACATATATGATAGATTATGTGACGCGTCCAATGCGTCAATTTATAACACGTGTAAAAAGTTCGTTAATGACAAAATGCCATTTTTCTTTTATGACTTGTGCCTATATGTGTTTCTGTCAGGATCCCAGAGGTATGGAAGTATTTCGAAGAGACGACGCATGTTGTAGGTTTTATAGGCACTTGCTGTCGAGGAGATGTCTATATTATATACCGGACACTATGTAGTCTGCTAGATTTTATAAAGATTCGTAGTATTGGCACACCTTTTATGTATGACGCATATGTGAAAAAGTATCTCCATCTGTATAGATAAAGAGGGATCCATGGTGTTTGTAAAACTGTCAGACATTCCTTGTTTGTATGTGTTGTAAGTATTGTTGCTGTTGAATATAAacgtttatatatttattattttattgccAAAAGCTAAATTAAGCATGGGAGCAGTTTAAATGATTTCAAACCATCATAATTCATGCTGAGCACGTTGTCTATGTTTTATGTCTTATAGACGTCTAGATAGTTATAATTTCACACATTAGAAAATGAACAATTCGTCCTATATAAAAGATAAATAAGTGTGCGGTA
>XM_036974309.1
ACGGGGTAGTCGATGGTTGTATTGCGCGCAGTGCTCTGAGGAAGTCGTATAGATTGCTTGGTATTGTAGGCTATACGCTCGCTCACACATTGGAGCTTTTTACAGAATTGAAGAAGACTATCTACATGCTTTATGCATGGATTGACAACCACGTTTCTGGTGTGAAAGAAGCCATGCCCTGCGTTCAGGCTCAGTATGGGTCATCACCGCAAGGAGCCAGCCCCGCTTCGCAGAGCTACAGCTACCACACCGCTGGAGAATACAACTGCGACTTCTTAACACCTGAGTTTGTTAAGTTTAGTATGGACCTGACCAACACTGAGATCACAGCTACTACTTCTCTCCCTAGTTTCAGCACATTCATTGACAACTATAGCACCAGTTACGACGTTAAACCGCCCTGTCTATATCAAATGCCGCATTCTGGAGAGCAGTCCTCCATCAAAGTCGAGGACGTCCAGATGCACAGCTATCATCAGCAGAGCCATTTGCCACCTCAGTCGGAAGAGATGATGACCCACTCCGGGTCAATTTACTTCAAACCCTCCTCACCTCACGCCCCAACCACACCAAACTTCCAGGTTCAGCCCAATCACATGTGGGAGGACCCTGGGTCCCTCCACAGTTTCCACCAGAACTATGTGGCTGCGACCTCTCATATGATAGACCAGCGCAAAAACCCGGTGTCAAGGCTGTCACTATTCTCCTTCAAACAGTCCCCTCCTGGTACCCCTGTGTCGAGTTGCCAGATGCGATTCGATGGTCCACTGCACGTCTCCATGAACCACGACAACCCAGGGGCACACCGAGGCTTAGACAGCCAGAGCTTCGCGGTACCCAGTGCTCTAAGAAAACAGGCCGGCTTAGCCTTCCCCCACTCCCTTCAGCTCGGCCATGGACACCAGTTGATGGACAGCCAAGTCCATTCGCCCCCGTCCCGCGGTTCACCGTCAAATGAGGGTCTGTGCGCAGTGTGTGGGGACAACGCTGCTTGCCAGCATTATGGAGTGAGAACATGCGAGGGTTGCAAAGGATTTTTTAAGCGCACTGTTCAGAAAAATGCTAAATACGTGTGTTTAGCGAACAAAAATTGTCCTGTCGATAAACGCCGAAGAAACCGTTGCCAATACTGCCGTTTCCAGAAGTGCATGGTTGTCGGAATGGTCAAAGAGGTTGTCCGGACTGCTAATCTAAAGGGTCGAAGAGGCCGTCTTCCCTCCAAACCTAAAAGTCCCCAAGACGCCTCACCACCCTCGCCGCCTGTCAGTCTCATAAGTGCCCTTGTTAGGTCCCATGTCGATTCCAACCCGTCCATGTCTGGCTTGGACTATTCAAGATTTCAGTCTAACCCTGACTACCAAATGAGTGGAGACGACACCCAGCACATCCAGCAGTTCTATGATCTCCTGACGGGTTCCATGGAGATTATCCGAGGTTGGGCGGAAAAGATCCCTGGGTTTTCTGATCTTCCGAAGCAGGATCAAGATCTCCTTTTCGAATCAGCCTTTCTGGAACTTTTTGTTCTGCGGCTGGCATACAGGTCCAACCCAGTGGAAGGCAAACTCATTTTTTGCAACGGGGTGGTCTTGCACAGGCTGCAGTGCGTCCGAGGATTTGGGGAATGGATAGACTCGATTGTGGAGTTTTCCTCTAGCTTGCAGAGCATGAACATCGACATATCAGCATTCTCCTGCATCGCCGCTCTTGCTATGGTAACAGAGAGGCATGGGCTTAAGGAACCCAAGAGGGTTGAAGAACTTCAAAACAAGATAGTGAACTGCCTCAAAGACCAAGTGACATTCAATGGCGGAGGCTTGACTCGTCCGAACTACTTGTCAAAACTTTTGGGAAAACTCCCTGAACTTCGCACGCTATGTACACAAGGTCTGCAGCGTATCTTCTACTTAAAACTCGAAGACTTGGTTCCTCCGCCAGCAATAATTGACAAACTTTTCCTCGACACTCTACCTTTTTAAATGGACTTTAAAACGGACTTTTAATGAGACCTCAAAGAACTTCCACAGACTCTGTTTGAGTCAGCCTAACACATTTTTTTTAGATTTTAACTCTGAATATTTCCAAGCTCCCTAGTACAATCCCCTACATCCTGATCAAGGATCCATGAAATAGATACAAAGAAGAGTGAGAAAAAATTGGCCTCAGAAAACCCACTGATGTTCGATTTTTTTATAGGCCTAATCCCCAGTATAGCCATTCGGGGAAAGTCTCCAAGGCCAATTCTCGACCAAGTTAAAAAACTTTCTTGCAACTCTTAGCCTATTTTCCTTGTTGTTGACCAAACATCTGTTCCATTGATAACGCATACTGATATGTAATATATTTCATTTATAAATATGCACATATATGATAGATTATGTGACGCGTCCAATGCGTCAATTTATAACACGTGTAAAAAGTTCGTTAATGACAAAATGCCATTTTTCTTTTATGACTTGTGCCTATATGTGTTTCTGTCAGGATCCCAGAGGTATGGAAGTATTTCGAAGAGACGACGCATGTTGTAGGTTTTATAGGCACTTGCTGTCGAGGAGATGTCTATATTATATACCGGACACTATGTAGTCTGCTAGATTTTATAAAGATTCGTAGTATTGGCACACCTTTTATGTATGACGCATATGTGAAAAAGTATCTCCATCTGTATAGATAAAGAGGGATCCATGGTGTTTGTAAAACTGTCAGACATTCCTTGTTTGTATGTGTTGTAAGTATTGTTGCTGTTGAATATAAacgtttatatatttattattttattgccAAAAGCTAAATTAAGCATGGGAGCAGTTTAAATGATTTCAAACCATCATAATTCATGCTGAGCACGTTGTCTATGTTTTATGTCTTATAGACGTCTAGATAGTTATAATTTCACACATTAGAAAATGAACAATTCGTCCTATATAAAAGATAAATAAGTGTGCGGTA

Function

NR:

description
PREDICTED: nuclear receptor subfamily 4 group A member 2-like isoform X1

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0021884 forebrain neuron development biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08558 NR4A2, NURR1; nuclear receptor subfamily 4 group A member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597025.2 False 3019 mRNA 0.45 8 47001807 47007084
XM_036974309.1 True 2946 mRNA 0.45 7 47001807 47007117

Neighbor

gene id symbol gene type direction distance location
rprma rprm coding downstream 279984 46718683 ~ 46721823 (-)
LOC110520042 LOC106586165 coding downstream 402727 46546837 ~ 46599080 (-)
LOC110504150 LOC106586158 coding downstream 666599 46078061 ~ 46335208 (-)
LOC110520037 pyr5 coding downstream 953948 46043940 ~ 46047859 (-)
LOC110520036 LOC106586156 coding downstream 967380 46031482 ~ 46034427 (-)
LOC110520049 LOC106586170 coding upstream 131249 47138366 ~ 47145477 (-)
LOC110520051 LOC106586171 coding upstream 141227 47148341 ~ 47177648 (-)
LOC110520052 LOC106586172 coding upstream 181365 47188482 ~ 47228663 (-)
LOC110520059 LOC106586177 coding upstream 718157 47725274 ~ 47748055 (-)
LOC110520061 NA coding upstream 742512 47749249 ~ 47848192 (-)
G264998 NA non-coding downstream 34870 46966733 ~ 46966937 (-)
G264992 NA non-coding downstream 38877 46962660 ~ 46962930 (-)
G264990 NA non-coding downstream 40162 46961337 ~ 46961645 (-)
G264988 NA non-coding downstream 41243 46960362 ~ 46960564 (-)
G264935 NA non-coding downstream 85007 46915828 ~ 46916800 (-)
G265380 NA non-coding upstream 128841 47135958 ~ 47136186 (-)
G265381 NA non-coding upstream 129490 47136607 ~ 47136822 (-)
G265382 NA non-coding upstream 130318 47137435 ~ 47137700 (-)
G265391 NA non-coding upstream 152941 47160058 ~ 47160345 (-)
G263274 NA other downstream 1464265 45536332 ~ 45537542 (-)
LOC110520012 cssa21h2orf88 other downstream 1897544 45099333 ~ 45104286 (-)
G262993 NA other downstream 1989558 45010172 ~ 45012249 (-)
G261580 NA other downstream 2970302 43989524 ~ 44031505 (-)
col6a3 LOC106598405 other downstream 4686449 42291728 ~ 42329627 (-)
G265988 NA other upstream 592101 47599218 ~ 47599815 (-)
LOC110505248 gcg other upstream 1024930 48032036 ~ 48033434 (-)
G268310 NA other upstream 2488360 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 2495299 49494001 ~ 49503025 (-)
LOC110520112 LOC106586230 other upstream 2556731 49563841 ~ 49608114 (-)

Expression


Co-expression Network