LOC110520049 (LOC106586170)


Basic Information

Item Value
gene id LOC110520049
gene name LOC106586170
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47138366 ~ 47145477 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597028.2
aaaggtcaaggggtctgaatacattcccgAATGCCACTGTATAGcgaatagtgtgtcatttggtGCGCATTCCTTGTCTGTACACAGTGTTACAGTGGAGGGGAAAATCTACTGGCCTGACAGTCCCGTGGAAGCTTGGTAGCTGGCTCTGCCATGGGTCACACAGGTTCAATGGGCCAGAGAGGATTAGAGTGAGGCAACACTGCCGTTAACTATTCTGTTTCGTGAGGGctggtcccaaatggcaacctatagggctctggtcaaaagtggtgcactatataaggaatacagtgccatttgggacagtgtCACCAAGACAGGCTTTAGGTGTGGGACATTCTGATGTTTCTATTTGACCTATTTTAATTGGTTTTGTATCCCAAACACATCATACATTTTGGTGTATTTGAATGAATGCAAAAGGAAAGGTACTGTATAATAATCTAATACATATTGTTCTTTATCTTGGAAAATTAATTAGGAAAATAGTAGTTTTTTATATGTCCTGTGAGAGTCTTCTTTAGCACATCCGACTTTGTTTTTATTCGTGACCATTGGCCTGTGTGTGATTTCCTCTTTGATCAAACCACCTCTGGCGGCTTCTAGCCATTGACCCATGCCGTGTGTTTGTAAAGCAAGTCTCTAGCCCCGAGCGAAAGCCTGCTTTTGTCTGTCCTCACAAGACAAAGCTCTTTGCTTTGGTGGACCAGAGAGGCTCAGGTTGACTCCAACCCATTCAGAAAACAGAAACTGGAGTAAGGGGAAGCAGGTGATGCTAGACACGACCACAGCGGTGGTAGTTTTTCATGCATTGCTGATTTCTGACAGACCATAAATCGAATCGCACAGACTGCACAAAGAAAAGGGGGATGTttgaaaagaagaaaaaaaacgtaaGCAGATTCCTTTTCCCGGCCGCAGCAGAGCAGACAAACAGTTCACAAGAAATATAAGagataaaaaatgaaaagaaagTGAGCGAGGGCTGTGATCGACGAACACAGGTTCGCCATAGTCACATGGTGTGGATTTCCGCTTTGACACATTTGCTTTCAGCAGCACAGCAGGGCAGGGACACACCACATACGACACATGCAGAGTTACTGTACGGAACTATCTGTAGCAGAGCTGCAATATGGTGCTGTGAAGAGAGAGCGCTCCACTCAACCATGCAATCCACCACGAACCTCAACAGGCTCCTGCGACAGAGCAGGCAAGACAGTTACATTATGGAGGGCTCTCTGAGGAAGAAGGGTCGTCTGTGGTATCAGCGCTCTCTGAAGGAACCCCATAACAAAACCAGTCAGAATGGGGGGACTACTCCCGGGACTCTGCCAAGAGGCTGGAAACAGTCCAACAGAGCCCGCTCAAACTCCTTAGTGGATTACACTGACCCTCAGAGGACTACCATTATGTTGCAAAAGCAAGACAATGAGACTTTTGGATTTGAAATTCAGACGTATGGAATGCAGCTGAAGAAAAGCATGGCGGTGGAGATGTGCACGTTTGTGTGCAAGGTGCAGGAGGACAGCTCAGCTGAGAGTGCAGGTCTGACCGCCGGTGATGTTATCGTCACCATCAATGGAGTCAGCATTGAGGGGTCAAGCCATCAGGGCATCGTTGACCTGATTCGAGAATCCAACAACCTATTACGGATGGAGACGGTGTGTGGGACGGTGGTGAAGAGGATTGAACTGGAGAAGAAGTTGAGCTTGCTCAAGCAAACCCTGAGAGAGAAAAGGGTGGAGTTGCAAGCACTCACATTACAGGAAAAATGTCTTACGCGAGGTAACCTGAATGACAGTTCTCTACACCCCTCTATGGACTCCCTGATGTCTCCAATGTCTCTGTCAGGACATAGTGGCCACCGCGGCCACCGCTTCTCCAGTGACAGTAGCTGCCAGAGTGGGATGACGGAGGACAGTGACCTGGCCAGTGTGTTTGGCGACCTGGGATCCCCGAGCCCCTGCAGTGTGGCCAGTCCAGACGATAGTTGCTTCTTCTCCAGAGACTTCACCGAGGAGGGGCCCCTCAGGCCCCCAGCCAGCCTCAGCCGTACCCGCAGCGGTAGCCTGTCCAGCCGCAGcagttccctctcctccccctcccccacgtGGGATgcctccagagtctcctccctgTTTGGGACTCTCCCCAGGAAGGCCAGAAGAGCCAGCGTCCGCAAACACATCCTGAAGTTCATCCCTGGATTCAACCactcagtggaggaggaggacaccTGAACTGAGCTATGAACGAACACTACAGTACGTCTTTGTGTGATGTGACGTTCAATACAAACATTTCTCGCTGAGACAGTCCTAATATGGATGCCATACCTGGACTCGGGAAGAGACACATACTATATGAGCATTTTGGACATGAGAAGCATTAGGAGGAAGCAAGCATTCTCCCTTTGAAAAAAAGCCTTCAGTTATCTACAGATACTGTGTGCATGATGGACTGCTTTGGTGTTGCACTTTCACACAACCATTTTCAGAGGATTTGTTCTTGaccaaaatcctagaggaaacagCGTCAATTCTTAAAATTGTAACACTTCTTTGTAATAAAGAATGCAGTTATTTGTAATAAGGAACGCAAGAACTCAGTTCATGTGTGTGCAGCCGATGAAACAAAGATTGTGCTTGCCATTTCTAAAATTGTGACCATTGGAGGTAGGGTGATAACTAAGAGAGACTATGAATGAAAAGGCTCGATCTTCCTCAATTAAACATTTTGCTTGTATATAACTTAAGACATGTATGCGTTGCATATTTACATGTGATCAAACAAGTTATTGGACAGCATGTCTGTCAGTTTTGTCACGTAAAAAAGTGTGAGTTCTTAGCTACGTGGTTAACTGCACAGTTCAAAACAGGATGTGGGCAGAGAAGGTGCTACGTTCTTCACTATTTCTGTTCCCATTGCCACATTTGGCTTGCTTATGTATCTACAACTTTCTGTCTTGATAAACTACACCTGAAGTTTCCTGTAATTCAGGACATTTTTCAGTAACTTGGAGTGTCGTGTAATGTAATTTGTTTTATGCTTGCTGTCTTCATATTGCTGCTTTTATTAAGGTTCAAAGCAAATATGTTTTGAAATTCTCTGAACACAAGTGACCTGTAAAGAAATGCACAAATAAACTGTCACTCGTCACATA

Function

NR:

description
cytohesin-interacting protein-like

GO: NA

KEGG:

id description
K24053 GRASP; general receptor for phosphoinositides 1-associated scaffold protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597028.2 True 3169 mRNA 0.46 8 47138366 47145477

Neighbor

gene id symbol gene type direction distance location
LOC110520047 LOC106586168 coding downstream 131249 47001807 ~ 47007117 (-)
rprma rprm coding downstream 416543 46718683 ~ 46721823 (-)
LOC110520042 LOC106586165 coding downstream 539286 46546837 ~ 46599080 (-)
LOC110504150 LOC106586158 coding downstream 803158 46078061 ~ 46335208 (-)
LOC110520037 pyr5 coding downstream 1090507 46043940 ~ 46047859 (-)
LOC110520051 LOC106586171 coding upstream 2867 47148341 ~ 47177648 (-)
LOC110520052 LOC106586172 coding upstream 43005 47188482 ~ 47228663 (-)
LOC110520059 LOC106586177 coding upstream 579797 47725274 ~ 47748055 (-)
LOC110520061 NA coding upstream 604152 47749249 ~ 47848192 (-)
LOC110520063 LOC106586182 coding upstream 710239 47855716 ~ 47861197 (-)
G265382 NA non-coding downstream 666 47137435 ~ 47137700 (-)
G265381 NA non-coding downstream 1544 47136607 ~ 47136822 (-)
G265380 NA non-coding downstream 2180 47135958 ~ 47136186 (-)
G264998 NA non-coding downstream 171429 46966733 ~ 46966937 (-)
G264992 NA non-coding downstream 175436 46962660 ~ 46962930 (-)
G265391 NA non-coding upstream 14581 47160058 ~ 47160345 (-)
G265393 NA non-coding upstream 16212 47161689 ~ 47161934 (-)
G265388 NA non-coding upstream 100551 47246028 ~ 47250041 (-)
G265543 NA non-coding upstream 271040 47416517 ~ 47418040 (-)
G263274 NA other downstream 1600824 45536332 ~ 45537542 (-)
LOC110520012 cssa21h2orf88 other downstream 2034103 45099333 ~ 45104286 (-)
G262993 NA other downstream 2126117 45010172 ~ 45012249 (-)
G261580 NA other downstream 3106861 43989524 ~ 44031505 (-)
col6a3 LOC106598405 other downstream 4823008 42291728 ~ 42329627 (-)
G265988 NA other upstream 453741 47599218 ~ 47599815 (-)
LOC110505248 gcg other upstream 886570 48032036 ~ 48033434 (-)
G268310 NA other upstream 2350000 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 2356939 49494001 ~ 49503025 (-)
LOC110520112 LOC106586230 other upstream 2418371 49563841 ~ 49608114 (-)

Expression


Co-expression Network