LOC110520055 (cg057)


Basic Information

Item Value
gene id LOC110520055
gene name cg057
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47245494 ~ 47255098 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597036.2
ATTCCTAAAAAAGTAACGCTACAGCCCTGTTTCCATAGTAACAAAACTCTCGACACAGTCAGACGTTTGTTTTGTCACTCCCTGCAAGTTAGCTCGAAATCCATACTCGGGTTTTCTCCGCACTATTTTTGCCGGTGTCCAGATTTGCAAACGCAGAATAGCTGGTAATAAAGACAACAGTAGACATGAACACTGACACAGATCGCCGACAAAACGACCATGGCGTTGGCAATGGTGATGATGATTCAACAAAAGCTGCCCCGACTTCCCAGATTCCTGGGCTCTCTGACGATGCTAACaatggtcctgaggagaggactAAAGGACGCCGTACTGGAGTTAATGAGTCCGATTCTGCTTATACTAAACTGGCTAAACAAGGAGGACAGAGGGGTAAAAACGGTTTATTGTGGCACGAGGAGACCAATTTGGACACCAAACCTAATTCTGCATCATCTTACAAAGCTCCAAACTGGTTCTCTGGATCTCCAAAAGCTCAAGAGCAAGCAAGCCCAACCGAGAGCTTTCAAAACTACATGTCAACTAATGCTCCCTTTGGGAGTGATAATAAGTCAACTTGGGAAAGGGACTTTGATGACAAAGAGAAGATCTCTCCTAACAGCCAGATGGAGAACTTGTCCTTAGCATCAGGAAAGAATGAAGATGCAGCAGGCAATTTCAAGAAAACCCCAGCAGCCCCGCTACCAATTGATGGGGCTGAAGAAATATCTCAGAAATCTCAGAATTCGACCCCTGTCAACATGTCTACGCTCTTGAGCTTTGGCTATTTAGAGGACCAGAAAGGGGCACCAAATACGCATTCATCAAGTTCCAAGGAGTAGAAAGGAGCAAAGGCAGTGACGCACGACTCAATGTTCTCCTCCACAACGTTCCTTCACCAGGTTTTGCCTGTTCACAACCGCTCATAGATCGATAAAAGCAGTTTGTTTAGGTTCAAGTCAGAGTTAAGGCACTCTTGTCATGCTACATGTTTATTCTTGTCCCTAGACGTATACACAACTGCAAAACTTGATTCTGTTAGATTGCGCTCACAGACCCACTCTGTTCTGTGCCTGAAGTTGCTAATGAACTGCATTTTCACTGTAACACTAACAGCTAATGTACTAGCCTGAGCTATGCTCTTGTTCATCTGTTGTAGTTTGGGGAATGATGGTTTACTTTTAAAAGGTGTCTATGGCTTAGAAGGGCTCCTCTAAAAATGCCTGCTGTTCTGAAGTGTTatgtctttttgtgtgtgtgtgtgcctcgttATGGTTGCTATAAAGATTTGttttaaagaaaataaatgtGTTGTGCATGGAA
>XM_021597037.2
ATTCCTAAAAAAGTAACGCTACAGCCCTGTTTCCATAGTAACAAAACTCTCGACACAGTCAGACGTTTGTTTTGTCACTCCCTGCAAGTTAGCTCGAAATCCATACTCGGGTTTTCTCCGCACTATTTTTGCCGGTGTCCAGATTTGCAAACGCAGAATAGCTGGTAATAAAGACAACAGTAGACATGAACACTGACACAGATCGCCGACAAAACGACCATGGCGTTGGCAATGGTGATGATGATTCAACAAAAGCTGCCCCGACTTCCCAGATTCCTGGGCTCTCTGACGATGCTAACaatggtcctgaggagaggactAAAGGACGCCGTACTGGAGTTAATGAGTCCGATTCTGCTTATACTAAACTGGCTAAACAAGGAGGACAGAGGGGTTTATTGTGGCACGAGGAGACCAATTTGGACACCAAACCTAATTCTGCATCATCTTACAAAGCTCCAAACTGGTTCTCTGGATCTCCAAAAGCTCAAGAGCAAGCAAGCCCAACCGAGAGCTTTCAAAACTACATGTCAACTAATGCTCCCTTTGGGAGTGATAATAAGTCAACTTGGGAAAGGGACTTTGATGACAAAGAGAAGATCTCTCCTAACAGCCAGATGGAGAACTTGTCCTTAGCATCAGGAAAGAATGAAGATGCAGCAGGCAATTTCAAGAAAACCCCAGCAGCCCCGCTACCAATTGATGGGGCTGAAGAAATATCTCAGAAATCTCAGAATTCGACCCCTGTCAACATGTCTACGCTCTTGAGCTTTGGCTATTTAGAGGACCAGAAAGGGGCACCAAATACGCATTCATCAAGTTCCAAGGAGTAGAAAGGAGCAAAGGCAGTGACGCACGACTCAATGTTCTCCTCCACAACGTTCCTTCACCAGGTTTTGCCTGTTCACAACCGCTCATAGATCGATAAAAGCAGTTTGTTTAGGTTCAAGTCAGAGTTAAGGCACTCTTGTCATGCTACATGTTTATTCTTGTCCCTAGACGTATACACAACTGCAAAACTTGATTCTGTTAGATTGCGCTCACAGACCCACTCTGTTCTGTGCCTGAAGTTGCTAATGAACTGCATTTTCACTGTAACACTAACAGCTAATGTACTAGCCTGAGCTATGCTCTTGTTCATCTGTTGTAGTTTGGGGAATGATGGTTTACTTTTAAAAGGTGTCTATGGCTTAGAAGGGCTCCTCTAAAAATGCCTGCTGTTCTGAAGTGTTatgtctttttgtgtgtgtgtgtgcctcgttATGGTTGCTATAAAGATTTGttttaaagaaaataaatgtGTTGTGCATGGAA
>XM_021597038.2
ATTCCTAAAAAAGTAACGCTACAGCCCTGTTTCCATAGTAACAAAACTCTCGACACAGTCAGACGTTTGTTTTGTCACTCCCTGCAAGTTAGCTCGAAATCCATACTCGGGTTTTCTCCGCACTATTTTTGCCGGTGTCCAGATTTGCAAACGCAGAATAGCTGGTAATAAAGACAACAGTAGACATGAACACTGACACAGATCGCCGACAAAACGACCATGGCGTTGGCAATGGTGATGATGATTCAACAAAAGCTGCCCCGACTTCCCAGATTCCTGGGCTCTCTGACGATGCTAACaatggtcctgaggagaggactAAAGGACGCCGTACTGGAGTTAATGAGTCCGATTCTGCTTATACTAAACTGGCTAAACAAGGAGGACAGAGGGGTAAAAACGGTTTATTGTGGCACGAGGAGACCAATTTGGACACCAAACCTAATTCTGCATCATCTTACAAAGCTCCAAACTGGTTCTCTGGATCTCCAAAAGCTCAAGAGCAAGCAAGCCCAACCGAGAGCTTTCAAAACTACATGTCAACTAATGCTCCCTTTGGGAGTGATAATAAGTCAACTTGGGAAAGGGACTTTGATGACAAAGAGAAGATCTCTCCTAACAGCCAGATGGAGAACTTGTCCTTAGCATCAGGAAAGAATGAAGATGCAGCAGGCAATTTCAAGAAAACATCTCAGAAATCTCAGAATTCGACCCCTGTCAACATGTCTACGCTCTTGAGCTTTGGCTATTTAGAGGACCAGAAAGGGGCACCAAATACGCATTCATCAAGTTCCAAGGAGTAGAAAGGAGCAAAGGCAGTGACGCACGACTCAATGTTCTCCTCCACAACGTTCCTTCACCAGGTTTTGCCTGTTCACAACCGCTCATAGATCGATAAAAGCAGTTTGTTTAGGTTCAAGTCAGAGTTAAGGCACTCTTGTCATGCTACATGTTTATTCTTGTCCCTAGACGTATACACAACTGCAAAACTTGATTCTGTTAGATTGCGCTCACAGACCCACTCTGTTCTGTGCCTGAAGTTGCTAATGAACTGCATTTTCACTGTAACACTAACAGCTAATGTACTAGCCTGAGCTATGCTCTTGTTCATCTGTTGTAGTTTGGGGAATGATGGTTTACTTTTAAAAGGTGTCTATGGCTTAGAAGGGCTCCTCTAAAAATGCCTGCTGTTCTGAAGTGTTatgtctttttgtgtgtgtgtgtgcctcgttATGGTTGCTATAAAGATTTGttttaaagaaaataaatgtGTTGTGCATGGAA
>XM_021597039.2
ATTCCTAAAAAAGTAACGCTACAGCCCTGTTTCCATAGTAACAAAACTCTCGACACAGTCAGACGTTTGTTTTGTCACTCCCTGCAAGTTAGCTCGAAATCCATACTCGGGTTTTCTCCGCACTATTTTTGCCGGTGTCCAGATTTGCAAACGCAGAATAGCTGGTAATAAAGACAACAGTAGACATGAACACTGACACAGATCGCCGACAAAACGACCATGGCGTTGGCAATGGTGATGATGATTCAACAAAAGCTGCCCCGACTTCCCAGATTCCTGGGCTCTCTGACGATGCTAACaatggtcctgaggagaggactAAAGGACGCCGTACTGGAGTTAATGAGTCCGATTCTGCTTATACTAAACTGGCTAAACAAGGAGGACAGAGGGGTTTATTGTGGCACGAGGAGACCAATTTGGACACCAAACCTAATTCTGCATCATCTTACAAAGCTCCAAACTGGTTCTCTGGATCTCCAAAAGCTCAAGAGCAAGCAAGCCCAACCGAGAGCTTTCAAAACTACATGTCAACTAATGCTCCCTTTGGGAGTGATAATAAGTCAACTTGGGAAAGGGACTTTGATGACAAAGAGAAGATCTCTCCTAACAGCCAGATGGAGAACTTGTCCTTAGCATCAGGAAAGAATGAAGATGCAGCAGGCAATTTCAAGAAAACATCTCAGAAATCTCAGAATTCGACCCCTGTCAACATGTCTACGCTCTTGAGCTTTGGCTATTTAGAGGACCAGAAAGGGGCACCAAATACGCATTCATCAAGTTCCAAGGAGTAGAAAGGAGCAAAGGCAGTGACGCACGACTCAATGTTCTCCTCCACAACGTTCCTTCACCAGGTTTTGCCTGTTCACAACCGCTCATAGATCGATAAAAGCAGTTTGTTTAGGTTCAAGTCAGAGTTAAGGCACTCTTGTCATGCTACATGTTTATTCTTGTCCCTAGACGTATACACAACTGCAAAACTTGATTCTGTTAGATTGCGCTCACAGACCCACTCTGTTCTGTGCCTGAAGTTGCTAATGAACTGCATTTTCACTGTAACACTAACAGCTAATGTACTAGCCTGAGCTATGCTCTTGTTCATCTGTTGTAGTTTGGGGAATGATGGTTTACTTTTAAAAGGTGTCTATGGCTTAGAAGGGCTCCTCTAAAAATGCCTGCTGTTCTGAAGTGTTatgtctttttgtgtgtgtgtgtgcctcgttATGGTTGCTATAAAGATTTGttttaaagaaaataaatgtGTTGTGCATGGAA

Function

NR:

description
uncharacterized protein C7orf57 homolog isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597036.2 False 1323 mRNA 0.44 9 47245494 47255098
XM_021597037.2 False 1314 mRNA 0.44 9 47245494 47255098
XM_021597038.2 False 1284 mRNA 0.43 8 47245494 47255098
XM_021597039.2 True 1275 mRNA 0.43 8 47245494 47255098

Neighbor

gene id symbol gene type direction distance location
LOC110520048 LOC106586169 coding upstream 112192 47118728 ~ 47133302 (+)
LOC110504153 gpd2 coding upstream 217548 47020995 ~ 47027946 (+)
LOC110520046 LOC106586167 coding upstream 413206 46801058 ~ 46832288 (+)
LOC110520045 LOC106586166 coding upstream 468102 46724055 ~ 46777392 (+)
LOC110504152 LOC106586162 coding upstream 701199 46458590 ~ 46544295 (+)
LOC110520054 LOC106586173 coding downstream 1066 47256164 ~ 47259319 (+)
LOC110520056 LOC106586174 coding downstream 60119 47315217 ~ 47441923 (+)
LOC110520057 dal1b coding downstream 187408 47442506 ~ 47445211 (+)
LOC110520058 tanc1 coding downstream 192279 47447377 ~ 47724843 (+)
LOC118958036 NA coding downstream 591955 47847053 ~ 47851905 (+)
G265120 NA non-coding upstream 59873 47184571 ~ 47185621 (+)
G265152 NA non-coding upstream 67859 47175948 ~ 47177635 (+)
G265150 NA non-coding upstream 70334 47174873 ~ 47175160 (+)
G265148 NA non-coding upstream 72676 47172506 ~ 47172818 (+)
G265147 NA non-coding upstream 72994 47172285 ~ 47172500 (+)
G265577 NA non-coding downstream 225144 47480242 ~ 47480460 (+)
G265620 NA non-coding downstream 330251 47585349 ~ 47585634 (+)
G265621 NA non-coding downstream 330730 47585828 ~ 47586049 (+)
G263859 LOC107588258 other upstream 1060690 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 1166069 46075484 ~ 46079425 (+)
G263710 NA other upstream 1311076 45934119 ~ 45934418 (+)
G263547 LOC106586150 other upstream 1406014 45838921 ~ 45839480 (+)
G267358 NA other downstream 2255705 49510803 ~ 49512475 (+)
G267381 NA other downstream 2299400 49554498 ~ 49555838 (+)
G267529 NA other downstream 2581519 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 2907203 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 3347204 50601983 ~ 50618761 (+)

Expression

LOC110520055(cg057) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 250.
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LOC110520055(cg057) Expression in each Bioproject

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LOC110520055(cg057) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6000.
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Co-expression Network