LOC110520059 (LOC106586177)


Basic Information

Item Value
gene id LOC110520059
gene name LOC106586177
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47725274 ~ 47748055 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597053.2
AACGTCAGCCACCTGCCCGCATCCTGtacaatggattcaattgagCTAAAATAACTACAtctctgcttttttattttattacgtGCTCCAACTCCTTTCTACCTCGAAAGAGTAAATTGGATATTTGAGAAACAGTTCGTAAATACAAGGACATTTTCCAGTGTCATATAACAACTTCCAATGTCACGTGTTGAGCAATCGGTCATGAGGTTTATTGTGTACAAAAGGTAAGCGCCACCTGTCACCAACAGCACAAGGTCGGCTGATAAAAGGTAAAGAAAGGAAGTGCATCTACTGTGACAAAATGGTGTCATTAATCTGCACGCTCCAGGACCATCGAGATGAAGTATATTGGTGCGCGTTCTCCCCCACACTACTGGCGACTTGCTCCGGGGATAAGACCATACGCATCTATAACACCAATGACTTCTCGGAGTTGCCGTTTTCGCCTCTGTCAGGCCATCGATATGGAGTTCACTGCTGCAGTTTCAGTGTATGTGGCACCTACCTGTTCACCTGTTCCACAGACGCTTTAACTATCATTTGGAGTATGGCAACAGGGGCATCAGATGGAACCTTGGCCCTTTGGGATTTCCACTCTAAGAAATTACGCAAATCTAAGGCCGTGACAGAGGCCACGGTGATGGCGTGCTGCTTCACTCCATGTGGTCAGATGTTTGTGACAGGATGTACATCTGGAGATATCAAAGTgtgggatttggacatgaagcaGCTCTATGCAGAGAGGGATGCCCATGATATGGGGGTGGCCTGCTGCCATTTTGCACCCCAGTTTGACATTGATTTCAGTTCGGTCGAGTTTCGATTGGCCTCCTGTGGACAGGACAGTCAACTGAAGGTATGGATCGTATCTCAGCATGGTGCAGCAGCCTGTGAGATGAAGCTGCTCCACACGCTGACTGGTCAGTCGGCCCCTGTGCTCTCCTGTGCCTTCTCTTCTGATGGTGAGCTGCTTGTCTCAGGCTCAGTGGATAAGACGGTGACCGTGTACAATGCGAGCGATGGAGTCCTCCTTCACACTTTGAAACGGCATGAGAGCTTTGTGACAGCCTGTGCCTTCTCTCCAACCCTGCCCTGGATGGCTACTGGCTCCATGGACAAGAAGGTCAACGTGTGGAGGATAGCAGATAGAGATATCGGGCAGGGAGCAGGAAGGAAGCTGTCAGGTCACTCCAGGCTGCTGGTGAGCGACTGGTCCGAGGAGGATGTGTTGGCCTGGCTGAGTGAGGAGGGTCTGGAGGAGCTGGTCACAACCTTCACAACCAATAACATAGACGGGCCTGAGCTGCTCTGTCTGACCAAGGAGACCCTGGCCTCAGAGCTGAGCATCGAGTCGGTGGGTCTCCGTGGTAAAGTCCTGAGGAAGGTGGAAGCTCTGAAGGCAGAGTTGACGGGACTAGACGCCCCAGatgagttcctctgtccaatCACCAGAGAGGTGATGAAGGACCCTGTCATTGCTGCAGATGGATATTCCTACGAGAGGGAGGCCATTGAGAGTTGGATCAGCGCTAAGAACCGCTCCAGTCCCATGACCAACCTACCTTTACCAACCACTCTGGTCATGCCCAACAGAAGCCTGAAGACCGCTATTGGCCGTTGGACTGCCACTCAGTGATGGATTGGTGTACGAGTAATCAGTAATGCCTTATTCTGAAGCAGACTATAAAATGAGGTCACCCAATTGTTTCCTATGAGAATACTCAGTGGTGCATTTGATGGTCAGGAAGTGTCATTTCAGCATGTCGCCATCTTGCTACATTAAGTTTTTGGAAACATTGCATGCGCAGTTTGAGCTACTCTAGGAAGTGACggtgcaggctagctcagtgctacCCCCTCTCATGGAGAACCTCAAGTTGAAGGCCAACCAGGTACTACAGGCTACCATTAGCAACTAAATGATCCTTAGaactttgtctgtgtgtgattttAAAGGAATTGCTTCAAAGACATACATCCAGTGAAATAGAAATCATGTACCATGATTGTGTTTGGAAAAGGTTTTTATATCCACAAATATTTACCACAAAAATCGCCATTTCCCCATTCACTATAAATGTGGGGTCTTGTTTTCTGgaaacaatgcctgcagtactgTGGTCGGCCTTCAACTTGAAATCATCAATGCGAAGGGGGCATTTCAGAATCAAGACAAATTTGTACAATGTGATCACTGACAATCATTTCACTGCACAGTTCTATTATATACTTTTGATTAAACAAGGGTGATTATTCATGAATGAA
>XM_021597051.2
AAACGTCAGCCACCTGCCCGCATCCTGtacaatggattcaattgagCTAAAATAACTACAtctctgcttttttattttattacgtGCTCCAACTCCTTTCTACCTCGAAAGAGTAAATTGGATATTTGAGAAACAGTTCGTAAATACAAGGACATTTTCCAGTGTCATATAACAACTTCCAATGTCACGTGTTGAGCAATCGGTCATGAGGTTTATTGTGTACAAAAGGTAAGCGCCACCTGTCACCAACAGCACAAGGTCGGCTGATAAAAGGTAAAGAAAGGAAGTGCATCTACTGTGACAAAATGGTGTCATTAATCTGCACGCTCCAGGACCATCGAGATGAAGTATATTGGTGCGCGTTCTCCCCCACACTACTGGCGACTTGCTCCGGGGATAAGACCATACGCATCTATAACACCAATGACTTCTCGGAGTTGCCGTTTTCGCCTCTGTCAGGCCATCGATATGGAGTTCACTGCTGCAGTTTCAGTGTATGTGGCACCTACCTGTTCACCTGTTCCACAGACGCTTTAACTATCATTTGGAGTATGGCAACAGGTGAGGTAAAGACGAAATTTGAACATCCTGGAGGCAGCCCAGTCAGGGTGTGCTCACTgtctccctactcctctctcctgctgtcagGGGCATCAGATGGAACCTTGGCCCTTTGGGATTTCCACTCTAAGAAATTACGCAAATCTAAGGCCGTGACAGAGGCCACGGTGATGGCGTGCTGCTTCACTCCATGTGGTCAGATGTTTGTGACAGGATGTACATCTGGAGATATCAAAGTgtgggatttggacatgaagcaGCTCTATGCAGAGAGGGATGCCCATGATATGGGGGTGGCCTGCTGCCATTTTGCACCCCAGTTTGACATTGATTTCAGTTCGGTCGAGTTTCGATTGGCCTCCTGTGGACAGGACAGTCAACTGAAGGTATGGATCGTATCTCAGCATGGTGCAGCAGCCTGTGAGATGAAGCTGCTCCACACGCTGACTGGTCAGTCGGCCCCTGTGCTCTCCTGTGCCTTCTCTTCTGATGGTGAGCTGCTTGTCTCAGGCTCAGTGGATAAGACGGTGACCGTGTACAATGCGAGCGATGGAGTCCTCCTTCACACTTTGAAACGGCATGAGAGCTTTGTGACAGCCTGTGCCTTCTCTCCAACCCTGCCCTGGATGGCTACTGGCTCCATGGACAAGAAGGTCAACGTGTGGAGGATAGCAGATAGAGATATCGGGCAGGGAGCAGGAAGGAAGCTGTCAGGTCACTCCAGGCTGCTGGTGAGCGACTGGTCCGAGGAGGATGTGTTGGCCTGGCTGAGTGAGGAGGGTCTGGAGGAGCTGGTCACAACCTTCACAACCAATAACATAGACGGGCCTGAGCTGCTCTGTCTGACCAAGGAGACCCTGGCCTCAGAGCTGAGCATCGAGTCGGTGGGTCTCCGTGGTAAAGTCCTGAGGAAGGTGGAAGCTCTGAAGGCAGAGTTGACGGGACTAGACGCCCCAGatgagttcctctgtccaatCACCAGAGAGGTGATGAAGGACCCTGTCATTGCTGCAGATGGATATTCCTACGAGAGGGAGGCCATTGAGAGTTGGATCAGCGCTAAGAACCGCTCCAGTCCCATGACCAACCTACCTTTACCAACCACTCTGGTCATGCCCAACAGAAGCCTGAAGACCGCTATTGGCCGTTGGACTGCCACTCAGTGATGGATTGGTGTACGAGTAATCAGTAATGCCTTATTCTGAAGCAGACTATAAAATGAGGTCACCCAATTGTTTCCTATGAGAATACTCAGTGGTGCATTTGATGGTCAGGAAGTGTCATTTCAGCATGTCGCCATCTTGCTACATTAAGTTTTTGGAAACATTGCATGCGCAGTTTGAGCTACTCTAGGAAGTGACggtgcaggctagctcagtgctacCCCCTCTCATGGAGAACCTCAAGTTGAAGGCCAACCAGGTACTACAGGCTACCATTAGCAACTAAATGATCCTTAGaactttgtctgtgtgtgattttAAAGGAATTGCTTCAAAGACATACATCCAGTGAAATAGAAATCATGTACCATGATTGTGTTTGGAAAAGGTTTTTATATCCACAAATATTTACCACAAAAATCGCCATTTCCCCATTCACTATAAATGTGGGGTCTTGTTTTCTGgaaacaatgcctgcagtactgTGGTCGGCCTTCAACTTGAAATCATCAATGCGAAGGGGGCATTTCAGAATCAAGACAAATTTGTACAATGTGATCACTGACAATCATTTCACTGCACAGTTCTATTATATACTTTTGATTAAACAAGGGTGATTATTCATGAATGAA
>XM_021597052.2
CGAAACGTCAGCCACCTGCCCGCATCCTGtacaatggattcaattgagCTAAAATAACTACAtctctgcttttttattttattacgtGCTCCAACTCCTTTCTACCTCGAAAGAGTAAATTGGATATTTGAGAAACAGTTCGTAAATACAAGGACATTTTCCAGTGTCATATAACAACTTCCAATGTCACGTGTTGAGCAATCGGTCATGAGGTTTATTGTGTACAAAAGGTAAGCGCCACCTGTCACCAACAGCACAAGGTCGGCTGATAAAAGGTAAAGAAAGGAAGTGCATCTACTGTGACAAAATGGTGTCATTAATCTGCACGCTCCAGGACCATCGAGATGAAGTATATTGGTGCGCGTTCTCCCCCACACTACTGGCGACTTGCTCCGGGGATAAGACCATACGCATCTATAACACCAATGACTTCTCGGAGTTGCCGTTTTCGCCTCTGTCAGGCCATCGATATGGAGTTCACTGCTGCAGTTTCAGTGTATGTGGCACCTACCTGTTCACCTGTTCCACAGACGCTTTAACTATCATTTGGAGTATGGCAACAGGGGCATCAGATGGAACCTTGGCCCTTTGGGATTTCCACTCTAAGAAATTACGCAAATCTAAGGCCGTGACAGAGGCCACGGTGATGGCGTGCTGCTTCACTCCATGTGGTCAGATGTTTGTGACAGGATGTACATCTGGAGATATCAAAGTgtgggatttggacatgaagcaGCTCTATGCAGAGAGGGATGCCCATGATATGGGGGTGGCCTGCTGCCATTTTGCACCCCAGTTTGACATTGATTTCAGTTCGGTCGAGTTTCGATTGGCCTCCTGTGGACAGGACAGTCAACTGAAGGTATGGATCGTATCTCAGCATGGTGCAGCAGCCTGTGAGATGAAGCTGCTCCACACGCTGACTGGTCAGTCGGCCCCTGTGCTCTCCTGTGCCTTCTCTTCTGATGGTGAGCTGCTTGTCTCAGGCTCAGTGGATAAGACGGTGACCGTGTACAATGCGAGCGATGGAGTCCTCCTTCACACTTTGAAACGGCATGAGAGCTTTGTGACAGCCTGTGCCTTCTCTCCAACCCTGCCCTGGATGGCTACTGGCTCCATGGACAAGAAGGTCAACGTGTGGAGGATAGCAGATAGAGATATCGGGCAGGCTCAACCCAGGAACCCCTCGTGCCAAGGAGCAGGAAGGAAGCTGTCAGGTCACTCCAGGCTGCTGGTGAGCGACTGGTCCGAGGAGGATGTGTTGGCCTGGCTGAGTGAGGAGGGTCTGGAGGAGCTGGTCACAACCTTCACAACCAATAACATAGACGGGCCTGAGCTGCTCTGTCTGACCAAGGAGACCCTGGCCTCAGAGCTGAGCATCGAGTCGGTGGGTCTCCGTGGTAAAGTCCTGAGGAAGGTGGAAGCTCTGAAGGCAGAGTTGACGGGACTAGACGCCCCAGatgagttcctctgtccaatCACCAGAGAGGTGATGAAGGACCCTGTCATTGCTGCAGATGGATATTCCTACGAGAGGGAGGCCATTGAGAGTTGGATCAGCGCTAAGAACCGCTCCAGTCCCATGACCAACCTACCTTTACCAACCACTCTGGTCATGCCCAACAGAAGCCTGAAGACCGCTATTGGCCGTTGGACTGCCACTCAGTGATGGATTGGTGTACGAGTAATCAGTAATGCCTTATTCTGAAGCAGACTATAAAATGAGGTCACCCAATTGTTTCCTATGAGAATACTCAGTGGTGCATTTGATGGTCAGGAAGTGTCATTTCAGCATGTCGCCATCTTGCTACATTAAGTTTTTGGAAACATTGCATGCGCAGTTTGAGCTACTCTAGGAAGTGACggtgcaggctagctcagtgctacCCCCTCTCATGGAGAACCTCAAGTTGAAGGCCAACCAGGTACTACAGGCTACCATTAGCAACTAAATGATCCTTAGaactttgtctgtgtgtgattttAAAGGAATTGCTTCAAAGACATACATCCAGTGAAATAGAAATCATGTACCATGATTGTGTTTGGAAAAGGTTTTTATATCCACAAATATTTACCACAAAAATCGCCATTTCCCCATTCACTATAAATGTGGGGTCTTGTTTTCTGgaaacaatgcctgcagtactgTGGTCGGCCTTCAACTTGAAATCATCAATGCGAAGGGGGCATTTCAGAATCAAGACAAATTTGTACAATGTGATCACTGACAATCATTTCACTGCACAGTTCTATTATATACTTTTGATTAAACAAGGGTGATTATTCATGAATGAA
>XM_021597050.2
TCGAAACGTCAGCCACCTGCCCGCATCCTGtacaatggattcaattgagCTAAAATAACTACAtctctgcttttttattttattacgtGCTCCAACTCCTTTCTACCTCGAAAGAGTAAATTGGATATTTGAGAAACAGTTCGTAAATACAAGGACATTTTCCAGTGTCATATAACAACTTCCAATGTCACGTGTTGAGCAATCGGTCATGAGGTTTATTGTGTACAAAAGGTAAGCGCCACCTGTCACCAACAGCACAAGGTCGGCTGATAAAAGGTAAAGAAAGGAAGTGCATCTACTGTGACAAAATGGTGTCATTAATCTGCACGCTCCAGGACCATCGAGATGAAGTATATTGGTGCGCGTTCTCCCCCACACTACTGGCGACTTGCTCCGGGGATAAGACCATACGCATCTATAACACCAATGACTTCTCGGAGTTGCCGTTTTCGCCTCTGTCAGGCCATCGATATGGAGTTCACTGCTGCAGTTTCAGTGTATGTGGCACCTACCTGTTCACCTGTTCCACAGACGCTTTAACTATCATTTGGAGTATGGCAACAGGTGAGGTAAAGACGAAATTTGAACATCCTGGAGGCAGCCCAGTCAGGGTGTGCTCACTgtctccctactcctctctcctgctgtcagGGGCATCAGATGGAACCTTGGCCCTTTGGGATTTCCACTCTAAGAAATTACGCAAATCTAAGGCCGTGACAGAGGCCACGGTGATGGCGTGCTGCTTCACTCCATGTGGTCAGATGTTTGTGACAGGATGTACATCTGGAGATATCAAAGTgtgggatttggacatgaagcaGCTCTATGCAGAGAGGGATGCCCATGATATGGGGGTGGCCTGCTGCCATTTTGCACCCCAGTTTGACATTGATTTCAGTTCGGTCGAGTTTCGATTGGCCTCCTGTGGACAGGACAGTCAACTGAAGGTATGGATCGTATCTCAGCATGGTGCAGCAGCCTGTGAGATGAAGCTGCTCCACACGCTGACTGGTCAGTCGGCCCCTGTGCTCTCCTGTGCCTTCTCTTCTGATGGTGAGCTGCTTGTCTCAGGCTCAGTGGATAAGACGGTGACCGTGTACAATGCGAGCGATGGAGTCCTCCTTCACACTTTGAAACGGCATGAGAGCTTTGTGACAGCCTGTGCCTTCTCTCCAACCCTGCCCTGGATGGCTACTGGCTCCATGGACAAGAAGGTCAACGTGTGGAGGATAGCAGATAGAGATATCGGGCAGGCTCAACCCAGGAACCCCTCGTGCCAAGGAGCAGGAAGGAAGCTGTCAGGTCACTCCAGGCTGCTGGTGAGCGACTGGTCCGAGGAGGATGTGTTGGCCTGGCTGAGTGAGGAGGGTCTGGAGGAGCTGGTCACAACCTTCACAACCAATAACATAGACGGGCCTGAGCTGCTCTGTCTGACCAAGGAGACCCTGGCCTCAGAGCTGAGCATCGAGTCGGTGGGTCTCCGTGGTAAAGTCCTGAGGAAGGTGGAAGCTCTGAAGGCAGAGTTGACGGGACTAGACGCCCCAGatgagttcctctgtccaatCACCAGAGAGGTGATGAAGGACCCTGTCATTGCTGCAGATGGATATTCCTACGAGAGGGAGGCCATTGAGAGTTGGATCAGCGCTAAGAACCGCTCCAGTCCCATGACCAACCTACCTTTACCAACCACTCTGGTCATGCCCAACAGAAGCCTGAAGACCGCTATTGGCCGTTGGACTGCCACTCAGTGATGGATTGGTGTACGAGTAATCAGTAATGCCTTATTCTGAAGCAGACTATAAAATGAGGTCACCCAATTGTTTCCTATGAGAATACTCAGTGGTGCATTTGATGGTCAGGAAGTGTCATTTCAGCATGTCGCCATCTTGCTACATTAAGTTTTTGGAAACATTGCATGCGCAGTTTGAGCTACTCTAGGAAGTGACggtgcaggctagctcagtgctacCCCCTCTCATGGAGAACCTCAAGTTGAAGGCCAACCAGGTACTACAGGCTACCATTAGCAACTAAATGATCCTTAGaactttgtctgtgtgtgattttAAAGGAATTGCTTCAAAGACATACATCCAGTGAAATAGAAATCATGTACCATGATTGTGTTTGGAAAAGGTTTTTATATCCACAAATATTTACCACAAAAATCGCCATTTCCCCATTCACTATAAATGTGGGGTCTTGTTTTCTGgaaacaatgcctgcagtactgTGGTCGGCCTTCAACTTGAAATCATCAATGCGAAGGGGGCATTTCAGAATCAAGACAAATTTGTACAATGTGATCACTGACAATCATTTCACTGCACAGTTCTATTATATACTTTTGATTAAACAAGGGTGATTATTCATGAATGAA
>TU302432
TCTGTGGCGTGACAAAACTgctcattttagagtggccttttgtccccagcacaagatgcacgtgtaataatgatcatgctgtttaatcagctttttgatatgtcacacctgtcaggtggatggattaccttagcaaaggagaaatgttcactaacaaggatgtaaaaaaaaaatgtgcacaacatttgagtgtGTATTGACAATTTCTGGattattttatttcaactcatgaaacatgggaccaatacttgctgcatttatatttttgttcagtgtatcagtaTCGACAAGGCCTATTGATTAACGAAACTCAATGTTTCTCGtattattttgttttataatTTGCCATTTACCTTGAAACATTTTTTCTTACACTGTCTCAATGGGCCACTACGCTGTAAATAGGAGATTAAGTGTAATGGCTCAAGTCACTCTTGACGTCGAAACGTCAGCCACCTGCCCGCATCCTGtac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597053.2 False 2268 mRNA 0.48 12 47725274 47747611
XM_021597051.2 False 2356 mRNA 0.48 11 47725274 47747612
XM_021597052.2 False 2298 mRNA 0.48 13 47725274 47747614
XM_021597050.2 False 2386 mRNA 0.48 12 47725274 47747615
TU302432 True 473 lncRNA 0.38 1 47747583 47748055

Neighbor

gene id symbol gene type direction distance location
LOC110520052 LOC106586172 coding downstream 496611 47188482 ~ 47228663 (-)
LOC110520051 LOC106586171 coding downstream 547626 47148341 ~ 47177648 (-)
LOC110520049 LOC106586170 coding downstream 579797 47138366 ~ 47145477 (-)
LOC110520047 LOC106586168 coding downstream 718157 47001807 ~ 47007117 (-)
rprma rprm coding downstream 1003451 46718683 ~ 46721823 (-)
LOC110520061 NA coding upstream 2014 47749249 ~ 47848192 (-)
LOC110520063 LOC106586182 coding upstream 108101 47855716 ~ 47861197 (-)
LOC110520064 NA coding upstream 123254 47870869 ~ 47918295 (-)
LOC118958137 NA coding upstream 175120 47922735 ~ 47929805 (-)
LOC110505248 gcg coding upstream 284421 48032036 ~ 48033434 (-)
G266090 NA non-coding downstream 4141 47720906 ~ 47721133 (-)
G266089 NA non-coding downstream 5463 47719480 ~ 47719811 (-)
G266087 NA non-coding downstream 5900 47719098 ~ 47719374 (-)
G266085 NA non-coding downstream 7789 47717270 ~ 47717485 (-)
G266084 NA non-coding downstream 8663 47716369 ~ 47716611 (-)
G266169 NA non-coding upstream 142783 47890398 ~ 47891579 (-)
G266182 NA non-coding upstream 173254 47920869 ~ 47921144 (-)
G266186 LOC106586184 non-coding upstream 193893 47941508 ~ 47943184 (-)
LOC118958229 NA non-coding upstream 318062 48065493 ~ 48066503 (-)
G265988 NA other downstream 125459 47599218 ~ 47599815 (-)
G263274 NA other downstream 2187732 45536332 ~ 45537542 (-)
LOC110520012 cssa21h2orf88 other downstream 2621011 45099333 ~ 45104286 (-)
G262993 NA other downstream 2713025 45010172 ~ 45012249 (-)
G261580 NA other downstream 3693769 43989524 ~ 44031505 (-)
G268310 NA other upstream 1747862 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 1754801 49494001 ~ 49503025 (-)
LOC110520112 LOC106586230 other upstream 1816233 49563841 ~ 49608114 (-)
LOC110520119 NA other upstream 2119602 49867187 ~ 49871681 (-)

Expression


Co-expression Network