LOC110520063 (LOC106586182)


Basic Information

Item Value
gene id LOC110520063
gene name LOC106586182
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47855716 ~ 47861197 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597068.2
TCGGGCACTCTAGAGGTGGGGTTACATATCAATGTGAGATGCTGACGTATGAAGCTCTGAAAAACTTCCGAGCCATGAGTTGGAGTTCGCGGACATGGAGTCAATGAAGAAATGGCACCCTCGCCCCTTAGCCTTATGCAATCTCCTTTTCGTTGTTGTTTATTGGCAATCTACTTTAGCTGGTGACTGTCCTGCAGATGGGCGCACCTGGGTGCCTTTTGGACAAAGATGCTACCACTTTGTCCATGGAGAAGAAGACATGGCTAAAAGTTATACGATTGCAGCTGCGAAGTCTCTCTGCTCAGGACATGAATTGGTGAGTGTCCAAAGTGCAGAGGAGAATGATTTCATCATCAAGTACAGTCCACAGGTGTGGAAAGGCAACATCCATGTGTGGTTGGGCATGTATTATGACAGTGACGATGAGGACTTTAAGTGGCAAGATGAGACGGGCCTGAGCTTTAAGAACTGGGGGAACAGCTCCAGCTCGCCTGACTTGATTCCCATGGACACCTGTGTGGCAATGCACAGCACCACAGGGGAGTGGGAGAAAGTCAGCTGTGTTGAAAACCTAGAGAATGGAGTGGTCTGTGAGACTGCTGAAAAAGCAGAGAAAAACGGCAAACCCGCTACTAGTCCACTGCTCTCAGCTCTGGTCATTCTGAGTGTGGTCGCCATCATGGGGATCTCGGCAGTCTTTTGGTTCCTGCACCAGAAGCACCAATTCGGTGCCGTCCTCGCATCGTTCGAGTACCACCCCCCGTTCAGGGCTCCCACCTCTGACGAGGCCTGCCTAGTGGAGAccgaggagacagaggagacagaggaggctgaTGACATGGCTTAATGGAGATCCTGCTCTTAGATTCTGCTGTGTGGAGTCACTGTTGGAGGAGAGGCCTAGAGAGAAAAAGGTGACCCTCTTAATTAAGACTGGTTCCATTGTTCCGAAGAGATGCTTTGACAGGTAAAATCACATCCTGCTATGGGATGACATGCGTAGCAACACTTTTACCACCAACTAGTGCCACGGTATGTCCCGTCCTTTGCACTTTTGCCTGTCTGAATGGGCTCCCATGTGGGTATTGGGTCAGTCTgctctttcttcttctttgttgTGCTAGCCAAACAGGATATGGACGAAAATATGTTGTCAAATGACATTTAGCCTACGCACCGAATGCGTTGCATGCCGTTAATTCGATACTCTTTTGAATTGTGAGAATCACGTGTTTCAATCGTCAAAGAAGTTGGGTCTCCCGACGTCTTCTGTCTGCATAAAGTTGGCGATCTTTGTACCGCATGGCGAGTCTGACATATGTAATCATTCACACATCTTTATGTTGTATTGCCCTTGTCAGTGCTCATACTTTTCAATGTGTCTCTTACCCTAGTGTCAGAACTTTGAATTTCTTAGTTCTCAATATGAGATCAATACAAGTCATTGAAAGTACAGAGGGACTAATCCATCATTCATACCTCAAACAAACAGATCAAGGCTTGTAAAATAGGTCAAAGAGACACATTTCAACCAGTGTGCATTTCTTTTTTCTCAGCAAGGGATCTGTAATCCTGTGTCCCATTGTCGTTTGTGTGCTGTGAAAGGCTTCTACAGATGATTACGTTTATAATAAGATATGATTTGTTGTGCATTAGTCTGTAATGACATGTATGAACTTCTATTCTATTCGTTTGAGTGAGGATCGTTTAGTCTTTCTCTAACAATGTCCTTGGTGGGACTACCTGAATAAACACTCATAATTAATTTCTTACAAAGCTATTAATCCAAATTCGAATTCATGAATATGGTCAGTAGTTTTACTAATGCATTAGTGATATGTTACAGTTTGAGGAGTGGTCCTTTAAATGGTGTTTTGTCAGCACTACATCCCTGAAGTTCTATGAATGTATTTGAAAGCGTTTTGCTGATTACCTTGCTATATTTGTTTAATTTGGCTTAAACTAAGCCCTGCTTGTTACACACAATAAAGTTTGGGCATCACCTGTGAGCTGG

Function

NR:

description
CD302 antigen-like

GO: NA

KEGG:

id description
K06722 CD302; CD302 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597068.2 True 2014 mRNA 0.45 6 47855716 47861197

Neighbor

gene id symbol gene type direction distance location
LOC110520061 NA coding downstream 7524 47749249 ~ 47848192 (-)
LOC110520059 LOC106586177 coding downstream 108101 47725274 ~ 47748055 (-)
LOC110520052 LOC106586172 coding downstream 627053 47188482 ~ 47228663 (-)
LOC110520051 LOC106586171 coding downstream 678068 47148341 ~ 47177648 (-)
LOC110520049 LOC106586170 coding downstream 710239 47138366 ~ 47145477 (-)
LOC110520064 NA coding upstream 9672 47870869 ~ 47918295 (-)
LOC118958137 NA coding upstream 61538 47922735 ~ 47929805 (-)
LOC110505248 gcg coding upstream 170839 48032036 ~ 48033434 (-)
fap LOC106586187 coding upstream 172552 48033749 ~ 48045947 (-)
LOC110504154 ifih1 coding upstream 184511 48045708 ~ 48059730 (-)
G266090 NA non-coding downstream 134583 47720906 ~ 47721133 (-)
G266089 NA non-coding downstream 135905 47719480 ~ 47719811 (-)
G266087 NA non-coding downstream 136342 47719098 ~ 47719374 (-)
G266169 NA non-coding upstream 29201 47890398 ~ 47891579 (-)
G266182 NA non-coding upstream 59672 47920869 ~ 47921144 (-)
G266186 LOC106586184 non-coding upstream 80311 47941508 ~ 47943184 (-)
LOC118958229 NA non-coding upstream 204480 48065493 ~ 48066503 (-)
G266359 NA non-coding upstream 212869 48074066 ~ 48075575 (-)
G265988 NA other downstream 255901 47599218 ~ 47599815 (-)
G263274 NA other downstream 2318174 45536332 ~ 45537542 (-)
LOC110520012 cssa21h2orf88 other downstream 2751453 45099333 ~ 45104286 (-)
G262993 NA other downstream 2843467 45010172 ~ 45012249 (-)
G261580 NA other downstream 3824211 43989524 ~ 44031505 (-)
G268310 NA other upstream 1634280 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 1641219 49494001 ~ 49503025 (-)
LOC110520112 LOC106586230 other upstream 1702651 49563841 ~ 49608114 (-)
LOC110520119 NA other upstream 2006020 49867187 ~ 49871681 (-)

Expression


Co-expression Network