LOC110504154 (ifih1)


Basic Information

Item Value
gene id LOC110504154
gene name ifih1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 48045708 ~ 48059730 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110504154
ATGAATCCACCAGAAGGGGTATATGACATCATAATGATGATGTGGAGTGAGGATGAGTCATGGGACGTCAATGTGATGTGGCAGGTGCCCCTGGTGGAGCAGCACTACTTCACAGAGTTCTGGAAGTTCCTGAAACACAAATACAATGTGGAGAGGGTCAGTGGGGACTCCTAACTCAAAATCTCCTTCATAGAGATTGACCAGACAAATGCTATCATCATCTGTACGGCCCAGATTCTGGAGAACTACTTGAAAAGGCCTCACGGTGGAGATGACGACGGGATTCAACTTTCAGGTTTGACATTTCTTGATTACGATGATTGCCATCGCAAACAAAAAGGGATGGtgtacaaccACAGTCTGATCCATTACCTGAAGCAGAAGCACAAAAACGCCATATTAAGGAAAGAGCAGAAGGatacagtgccccccccccccccccccccccacagacccTGGGCTTGGCCGTCTCACCCGGCGTTGGGGGAGCCAATAAAATGGAGGAAGCCGAGGAGCACATTCTACAAATCTGTGCAAACTTGGACTCATATACAATTATGACAGTAAACCTTGAGGAAAACAAAAAAGAACAACACTAAAACATTGCCACTGCTGAACAGAGAAAATAGATACTCTTGTTATTTCCAGTAGAGAGAGACAATGAATTAAGAGACGCATATACTGAAACCCTACCTGCGACCTAGGCACCCAGAGCAGTGGGTGGTCCCGAAATAACAGAATTATGAGATAACACGgttattttcatgttctactgtacTTGAAGGCTACCGATAAGattatttttcaaccatttttcATACCAAGTGTCATGACACCCTGTTATACCCCAAATGTACATTCCAAAGTAAGTATCTATGTTTTCCTACAGCTGCAAAAAAGGAGAATCAGAAGGTGAATGTTTGTGCTCAGCATCTACGGCAGTACAAATAGGCCTTGTACCTGAGCAAAACCATCCGCATGTGTGATGCCTTCAGCTTCCTGGACAAATACTTTTACGAGGAGCTGAAGAAGAAAGTGGCCCCTGAGGACGAGGTGGCCATTATTAAGACCGACACAGAGAGATTCCTCTTCACACTTTTTAAAGATAAAGGAATTTCACATTCAGGCGATCATGGATGAAAGAGTGCGAACAACCATGGAAAAGCGGATAGGCATGAAATAGAAGACCCCGTCCAAAGTGAAGCTCAGCTGTGGAAGCTGCAATAAACCAGTCAATGTGAAACACCAATTTAAAGATGGGGTTCAACAATGCTCTACAGTGGAATTGAGGTACTTCCTGGTGACGTGtgatgagaagaagaagaacatcaAGTGGAGTGAGCTGGGTATCCAGTTACCTGCCTCTGACTATGCTGAACATGCTCAATCTGTGGTCGAAGCTCAGAGGATGAAGAATCACTGTATAACATGGTAGCTACAAGAATTGTTGGCAAATAGTAAGGATCGAAATAAATGCGTGATGCTCCCTGTACTTTTGGTAGTTGGACTTAATAAATCAGCCTTATTTTCACTGAAAATTACACATGTTCAAACAGTATGTGACTTTTATATGTTTTATTGCGAAGACCGTTAAATGCGCAATGATATTGGGGGTTTCAGATGCCTTTTTCTTTCTTTTAACAAGTTGCCAATTGCAATTAAATGAATCGTAGTCATTGTCATTTAATTGAATTATGCAATCAGTAAATGTTGAATCAAATGGATAATATGCTTGCATTAAAAAAAGGGATCCTAGAGAAAAGATTCCATTACTTATGTGCCCTAGATATTTCCATGCTTACTCACTGACTCGGAAAAAACGGGTTTAGCAGGAAGAGTGCTGAGAGAGGAAGATGACTAGTTGAATATGATGTGCAAACATTTCACAGTTGTCCTTGATCTGTGCTCCTAGATGAGCTCTTAATGTGTCAGACACTGCATTTGCTTCCGTCAGTAACAACGTAATTACACAATTATTGTCACATACCCTGGATAGGTGCAGTCAAATgtattgttttacagggtcaaccATAGTAGTAAGTCACTCATGggcttaagtgccttgctcaagggcacatcaacagacttttcaccttgtcagcttgggtattcgaaccagcgacctttcggttactggccgaaCTCTCTAACCGGAATGGATCAAACTAAAGATGATAATGAACTTCttcacacttcctctcccctgGGATCCCCTGGTTCCTGTGGGACTTTCTCACTACAGTCCACCTGTTGGCACACATGCTCACGTTAGATCTGACATACAGAAGACAGGTGGTGTTTTTTTTGTGATTTTGCTCTGCTGCTGGAAAATAGATGAATAAGTACACATGGCATTAAGATTGTTGGTAAATTCACGTATCACTTTGTCAATGTCACAGGTATGTGTTACCCTGGCTACTGTGATTTGATAGTTCAGGGAGTTATCAAAGAAAATGATATGAGGGTTTGCCTTAGAAATTGTATGCTTATGACTTTGCCCCTTGGTTACTGTTTTCATTGTtttgttgaatgtttatcctgaATGCATAGCTTTCTGGATATTTCCAAAACACAAATTCCTGCCATGTGTAAAGTGTATGAGGAGGCAATAAACTGGGGCAGAATCTGCTTTGATGTGTGTTTGGTTTCAATTATTTCTGCATGGTGTGTAGACGATGTGCAAATATTTGGACTTTACAGATATACAATTGAATGGTTATTTATCCACAAAATGCACAGAAATCCACAAATTGCAAATGTATTCGATATAATTGCCAAGCTTAACGATGTTCACTGATAATAACTGGACGATTTATGATATGCGCTGAATGGAAAAGTCACTTCCTAAATCTTCACAAATTCGGCGCCATCGGAAAGTTATGTGGGCTGTTGACTTGGAGGAGGCATCCCTGTGACTATTTAATCAAGAATCTATACTTTTTGTCTGCGCTATGTCAATTGTTTGACATCCAGAGAGAGTGCGAAGAAGTCGACTGTCACTCCACGTCAGCGAACCGGATTCCTCAGGTTGAGAGCTACATGTCCACTCCCGGGTGAAT

Function

symbol description
ifih1 Enables protein heterodimerization activity. Acts upstream of or within regulation of transcription, DNA-templated. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in Aicardi-Goutieres syndrome. Orthologous to human IFIH1 (interferon induced with helicase C domain 1).

NR:

description
PREDICTED: interferon-induced helicase C domain-containing protein 1 isoform X2

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110504154 True 3059 mRNA 0.42 8 48045708 48059730

Neighbor

gene id symbol gene type direction distance location
LOC110505248 gcg coding downstream 12274 48032036 ~ 48033434 (-)
LOC118958137 NA coding downstream 115903 47922735 ~ 47929805 (-)
LOC110520064 NA coding downstream 127413 47870869 ~ 47918295 (-)
LOC110520063 LOC106586182 coding downstream 184511 47855716 ~ 47861197 (-)
LOC110520061 NA coding downstream 197516 47749249 ~ 47848192 (-)
LOC118958229 NA coding upstream 5763 48065493 ~ 48066503 (-)
LOC118958240 LOC106586190 coding upstream 19371 48079101 ~ 48097689 (-)
LOC110520070 LOC106586190 coding upstream 54504 48114234 ~ 48170057 (-)
LOC110520071 LOC106586191 coding upstream 174090 48233820 ~ 48269471 (-)
LOC110520072 LOC106586192 coding upstream 293679 48353409 ~ 48399492 (-)
G266186 LOC106586184 non-coding downstream 102524 47941508 ~ 47943184 (-)
G266182 NA non-coding downstream 124564 47920869 ~ 47921144 (-)
G266169 NA non-coding downstream 154129 47890398 ~ 47891579 (-)
LOC110520059 LOC106586177 non-coding downstream 297653 47725274 ~ 47748055 (-)
G266359 NA non-coding upstream 14336 48074066 ~ 48075575 (-)
G266360 NA non-coding upstream 16850 48076580 ~ 48076886 (-)
G266362 NA non-coding upstream 18069 48077799 ~ 48079009 (-)
G266416 NA non-coding upstream 83792 48143522 ~ 48143729 (-)
G265988 NA other downstream 445893 47599218 ~ 47599815 (-)
G263274 NA other downstream 2508166 45536332 ~ 45537542 (-)
LOC110520012 cssa21h2orf88 other downstream 2941445 45099333 ~ 45104286 (-)
G262993 NA other downstream 3033459 45010172 ~ 45012249 (-)
G268310 NA other upstream 1435747 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 1442686 49494001 ~ 49503025 (-)
LOC110520112 LOC106586230 other upstream 1504118 49563841 ~ 49608114 (-)
LOC110520119 NA other upstream 1807487 49867187 ~ 49871681 (-)
LOC110520121 LOC106581751 other upstream 1840443 49895327 ~ 49901575 (-)

Expression


Co-expression Network