LOC118958229


Basic Information

Item Value
gene id LOC118958229
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 48065493 ~ 48066503 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005047293.1
ttcctaaagaaaagtatgTACATTTTACTcgatacattttccctgacacccaaaagtactcgttacattttgaaggcTTAGCAGGACAAAAAATGgttaaattcacacacttatcaagagacttttacttgagtaattttctattactgtatctttacttttactcaagtatgacaattgggtactttttccaccactgcgaATAATATGGAATTAGCAGCTACGCTAGACATATCAACGACCCCTTCTCAGTTTGGCATGGAGTATTCAGAAGGACACCGAATTCACGAGCAACAATGTGTCTGTCGGCGTAATTAAAAAGTTGAGTAAAGAGGGGCACAACAAAGCTGCCCACCAGTGAATGGATACTGTACATATGGTACATAAAAGAGACAATGGGAGTGAACACCCTTGCAGCAATGCTGCCAATGATCTGCAAAATAGCTGTCCTGTCGCAGATTTACACAAACTACTGCCTCGAACCACCATGATCCAGAAACGGTCGGATGCTTGACTAGTGGCACGATAAATACTGTCTTTCAGAGGACACAGATTGGAAACCTCTCTTCAAAGTTCCTGGAGACCAAATCTGGAAGCGACGAAGCACTATTCTCTCTGACAACACAGCAGCAGCTCccccagcaaaaaaaaaaaacggaatccATTTCCAGCAGCGTAGAGCCCAATAAACGACACCATGAGCAAACAAACAATAACGTGGGACAATTTTAAGAAATGGCAACATTAATAAATAGGTGGCATGTGTTAGTCACTCAAGAAGTGGCGCtaatgcttgctagctagcctgtGGTTATGTTGCATAGCAACTAGTCAAGCAACAAAACTTTTACCGGACTACTTTTTCTGGTGGAATGTATTGATTAAAGCTACATTTTCAATTTA
>TU302631
AAAAAGTTGAGTAAAGAGGGGCACAACAAAGCTGCCCACCAGTGAATGGATACTGTACATATGGTACATAAAAGAGACAATGGGAGTGAACACCCTCTGCAAAATAGCTGTCCTGTCGCAGATTTACACAAACTACTGCCTCGAACCACCATGATCCAGAAACGGTCGGATGCTTGACTAGTGGCACGATAAATACTGTCTTTCAGAGGACACAGATTGGAAACCTCTCTTCAAAGTTCCTGGAGACCAAATCTGGAAGCGACGAAGCACTATTCTCTCTGACAACACAGCAGCAGCTCccccagcaaaaaaaaaaaacggaatccATTTCCAGCAGCGTAGAGCCCAATAAACGACACCATGAGCAAACAAACAATAACGT

Function

NR:

description
uncharacterized protein LOC105357940

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005047293.1 False 903 mRNA 0.41 2 48065493 48066503
TU302631 True 382 lncRNA 0.45 3 48065677 48066187

Neighbor

gene id symbol gene type direction distance location
LOC110504154 ifih1 coding downstream 5763 48045708 ~ 48059730 (-)
fap LOC106586187 coding downstream 19546 48033749 ~ 48045947 (-)
LOC110505248 gcg coding downstream 32059 48032036 ~ 48033434 (-)
LOC118958137 NA coding downstream 135688 47922735 ~ 47929805 (-)
LOC110520064 NA coding downstream 147198 47870869 ~ 47918295 (-)
LOC118958240 LOC106586190 coding upstream 12598 48079101 ~ 48097689 (-)
LOC110520070 LOC106586190 coding upstream 47731 48114234 ~ 48170057 (-)
LOC110520071 LOC106586191 coding upstream 167317 48233820 ~ 48269471 (-)
LOC110520072 LOC106586192 coding upstream 286906 48353409 ~ 48399492 (-)
LOC110520074 LOC106586194 coding upstream 333327 48399830 ~ 48448287 (-)
G266186 LOC106586184 non-coding downstream 122309 47941508 ~ 47943184 (-)
G266182 NA non-coding downstream 144349 47920869 ~ 47921144 (-)
G266169 NA non-coding downstream 173914 47890398 ~ 47891579 (-)
LOC110520061 NA non-coding downstream 259533 47749249 ~ 47848192 (-)
LOC110520059 LOC106586177 non-coding downstream 317438 47725274 ~ 47748055 (-)
G266359 NA non-coding upstream 7563 48074066 ~ 48075575 (-)
G266360 NA non-coding upstream 10077 48076580 ~ 48076886 (-)
G266362 NA non-coding upstream 11296 48077799 ~ 48079009 (-)
G266416 NA non-coding upstream 77019 48143522 ~ 48143729 (-)
G266425 NA non-coding upstream 91011 48157514 ~ 48157785 (-)
G265988 NA other downstream 465678 47599218 ~ 47599815 (-)
G263274 NA other downstream 2527951 45536332 ~ 45537542 (-)
LOC110520012 cssa21h2orf88 other downstream 2961230 45099333 ~ 45104286 (-)
G262993 NA other downstream 3053244 45010172 ~ 45012249 (-)
G268310 NA other upstream 1428974 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 1435913 49494001 ~ 49503025 (-)
LOC110520112 LOC106586230 other upstream 1497345 49563841 ~ 49608114 (-)
LOC110520119 NA other upstream 1800714 49867187 ~ 49871681 (-)
LOC110520121 LOC106581751 other upstream 1833670 49895327 ~ 49901575 (-)

Expression


Co-expression Network