slc38a11 (slc38a11)


Basic Information

Item Value
gene id slc38a11
gene name slc38a11
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 48448398 ~ 48453258 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021584378.2
GTTTTTCATGGGCGAATTTAAACGACTCCGATTTGGAAAGTTTTGAACATTCTGCCCAGTTAATTAATTTCATGGCAGAGATGCGAATAGAACGTTTTATAAATTGACGGAAACACTTAGAACACCTGGTGGAATAAAAATGAGTACATCAATACAGGAAAGTGGAGAACGGGAAGCTCACCAGACGGAGAATGGCGAAGGGAAACCGTTGCTTGCTTCACAAAAGGTGGTTGCAGGAAAAGTCAAAAGTTCGATGATATCAGCCGCTTTTAATTTCATCAATTCGATAATAGGATCTGGAATAATAGGTTTGCCATACTCCTTAAACCAGGCTGGCCTGCCCCTTGGCCTTTTTCTCCTGGTTTTGGTAGCATTTATTACAGACTACTCTATCATCTTGTTGATTAAAGGAGGGAATCTTTCAGGGACAAATAGTTACCAGTCACTTGTACGTAGCACTTTTGGTATCACTGGATTTCTGGTTCTGTCTTTGTTGCAGTTTCTATACCCTTTCATTGCTATGATCAGCTACAACATCATAACTGGTGACACATTGACCAAAGTGTTTCAGAGACTACCTGGAGTTGGACCGGGCCACATACTTTCAGAGAGACATTTTGTCATCGCAGTGTCCACTATTCTATTCACATTACCCCTGTCTCTTTTCCGGAATATATCACAGCTGGGAAAGGTGTCCTTACTGTCCATGGTGTTGACTGTTTTCATCCTCATCACTGTTATCATCAGAGCAGCTACCCTGGGACCACATATTCCCCCTACAGAGAATGCATGGGTGTTTGCAAGGTGGAATGCGATTCAGGCCGTTGGTGTTATGTCTTTTGCCTTTATCTGTCATCACAACAGCTTTATGATCTACGGCTCTCTGAAGGAACAGAGCCTAAGTAACTGGTCTCGTGTCACCCACATGTCTGTTGGTTCGGCTATGATTGTCAGTATTATGTTTGCTGCGACTGGCTATGCTACCTTCACTGGGTACACGCAAGGTGATATCTTTGAAAACTACTGTGGGAACGATGACCTGGCTACTTTTGGTCGCTTCTGTTTTGGCATCAGTATAATAACAACTTTTCCTCTGGAATGTTTTGTGACTCGAGAGGTAGTagccaatgttttttttaaagggtcTCTCAACAACCATGCCCATGTGGCGGTCACCTTGCTCATAGTTGCAGCGTGCACAGCATTATCCTTGGCCTACGACTGTCTGGGTATTGTTCTGGTGTTAAATGGTGTTGTAAGCGCCACACCTTTAATTTTCATCATTCCATCAGCTTGCTACCTCAAGCTTTCCACAGAGCGCTGGTTCCAAGGTGAAAACCGCATCCCCTGTCTCATCCTCATAGCTGGTGTCTTTGTCATGACAACAGGTTTGATCATGGCGGTTATGTTCCCCCAAGACTGCTCCCATGGAGCCGAGATGTTTTACTGCGCAACTTCCAACCTCTCCATATCCCCCACACCACCCACTGAGCTACTCTTTCAGAATTCAACTCAGAATTCTAGATGAAACGTTGTTGTTACACACTGGGGTTTTGTGATATGACTTTGTATGCTCATTGTATTTATTACCTCTGCAATGAATGTGTGTGTCATAATTTATGCTACTATTTGTGAAAATGCCATAATGCAATAGATTAATCAATTTGTATATCAGACTGAGACAAAGTTCCACTTTGAATTTCGAGAGTAGTTACCTTCGAGAAACCTACCACACGATGTCGCTGTAACATAATCAGACTAAATAAAACTTTTATAAAAACGTTTCTCGAAGGTAACCTTTTGCCCTCTTGCCTTGATGTCACGCCCTTCGAAGATGTAGTTATAGAAGTTTGTCCAATGGTAGTGCATTTTCCACTGTTGGTTAGAGGGAATATGTTATAAATTTACTATTTGGGTAATTTCATGATTATAATATTTAGTATATTTCAATATTATAAATGTAAACCCGAATT

Function

symbol description
slc38a11 Predicted to enable amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to act upstream of or within amino acid transport and sodium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC38A11 (solute carrier family 38 member 11).

NR:

description
putative sodium-coupled neutral amino acid transporter 11

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14997 SLC38A11; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021584378.2 True 1973 mRNA 0.42 12 48448398 48453258

Neighbor

gene id symbol gene type direction distance location
LOC110520074 LOC106586194 coding downstream 111 48399830 ~ 48448287 (-)
LOC110520072 LOC106586192 coding downstream 48906 48353409 ~ 48399492 (-)
LOC110520071 LOC106586191 coding downstream 178927 48233820 ~ 48269471 (-)
LOC110520070 LOC106586190 coding downstream 278341 48114234 ~ 48170057 (-)
LOC118958240 LOC106586190 coding downstream 350709 48079101 ~ 48097689 (-)
LOC110520077 LOC106586199 coding upstream 124778 48578036 ~ 48610361 (-)
LOC110520082 LOC106586202 coding upstream 345181 48798439 ~ 48824632 (-)
LOC118958775 NA coding upstream 406073 48859331 ~ 48873896 (-)
LOC118936376 NA coding upstream 426591 48879849 ~ 48881507 (-)
LOC110504168 LOC106581787 coding upstream 428806 48882064 ~ 48887719 (-)
G266644 NA non-coding downstream 130762 48317384 ~ 48317636 (-)
G266614 NA non-coding downstream 152327 48295856 ~ 48296071 (-)
G266613 NA non-coding downstream 152543 48295552 ~ 48295855 (-)
G266605 NA non-coding downstream 155674 48292487 ~ 48292724 (-)
G266604 NA non-coding downstream 156032 48291845 ~ 48292366 (-)
G267706 LOC106586196 non-coding upstream 51199 48504457 ~ 48505213 (-)
G267705 NA non-coding upstream 52085 48505343 ~ 48508800 (-)
G267742 LOC106581475 non-coding upstream 106361 48559619 ~ 48559960 (-)
G267743 NA non-coding upstream 106825 48560083 ~ 48560535 (-)
G267785 NA non-coding upstream 167581 48620839 ~ 48621096 (-)
LOC110505248 gcg other downstream 415096 48032036 ~ 48033434 (-)
G265988 NA other downstream 848583 47599218 ~ 47599815 (-)
G263274 NA other downstream 2910856 45536332 ~ 45537542 (-)
LOC110520012 cssa21h2orf88 other downstream 3344135 45099333 ~ 45104286 (-)
G262993 NA other downstream 3436149 45010172 ~ 45012249 (-)
G268310 NA other upstream 1042219 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 1049158 49494001 ~ 49503025 (-)
LOC110520112 LOC106586230 other upstream 1110590 49563841 ~ 49608114 (-)
LOC110520119 NA other upstream 1413959 49867187 ~ 49871681 (-)
LOC110520121 LOC106581751 other upstream 1446915 49895327 ~ 49901575 (-)

Expression


Co-expression Network