LOC118958775


Basic Information

Item Value
gene id LOC118958775
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 48859331 ~ 48873896 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005047558.1
CCCTttttaatagagagagagagagagagagagagctgtcttCTTTATATGTAAATGTACCATCATAAATCATTCAAAAGCTAAGTGTATGGGTTGACATTGTTTGATTGTGTTGGTATAATGTGAAATCAGCATTTTAAGGCATGTTGCACAAAGTTGTTTACAGGATGATAGTGTGGACATTAGATTGTCCACAGGTCATTACTTTTATTGGTTAAATATTAGCCATTCTATCCACCTCTGAGGACAGTGTTCGCACGCAAATGCACTGTTCGACCACTGGGGTCATTTACATAATGACATCATTTTCCCATTCAGTGATTCTCTGGTGGGGTGATTGGGCACTGTAACAACAATGGGTTTCTAACTGTGAAGTAAAACATCACGATatgtactattattattatattgtttatTATTACAAGTAATTTTGGATTTTAATCATTACCCTAAGATAAGTGAACATCCCCTACTACAGTGGTTCTCGAACCTCTGCTCTGGGACACCCAGATATCTCACAACTTGATTCACTTATCAAGGGCTTTATTATTAGTTGACTGTTCAGCTGTTCTGTCTGGAATAGTTCAAATACATTGAATGGCTGCGGACCCCAAAGGAGCAGTTTTGCTCTTATTTTTCTCAACTGAGAAAAAGGCTACCAGATGCCCCAGTGAGACCAATGGGATATCTAATGAAAATGAAGAACCGTGAACAGACCCCTTTTCTAGACAACTTCCAGGGACTAAACTGGTACTAAACTATGCTTTCTTAACATTCTGTATCTTCATGCAGATATAAACTCGACTAAAATGTACAAATATATTTATGTATAAAGTTGATTTAGGCTTTGCCTACAGGTACATGTCTTATATCGCCACAGGGTGGCGCAAATTCATGAGCACAGACAAAGAGACTAAAAACTTTGCATTGTGAAAAACGTGTCTCATTCCCTTTTTATTTTCATATCTGGTTTTAGACGAGACATAAGGAATACACATCGCATTTGATAAATACTGTGCATTATAATTTGTATTGCATACATTTATTTCTTAAAGGACTAGAAACTTTAACTTTACATTAAAAAAACTCAATTTCCGGTGTGCAGTCACAGTCCTTGTTTCCGTGAGCTGAAATTTTGAAAACTACTGCGAAAAGCTGACAGGAGTTCTGGGTCTAGGAACATCCGAAAATTGCTAAGGTAACGTTGGCTAACAAAATtcaccatatttttttttacaattatagCTAAAATAATTGTTATATGAATCGCGTCGGCCACGTTTGTTCATGAGTTGAGAGGTGGTTTGTTTTAAGCTAGCTGGGTTTGCTTAACCATGAGTTCATATATTTCAGTGTAAAGCTACAACAATCTGGGATTAGCTGTTTTATCAGAAAAATTGAACCCCCGACACTTGATTTATGGATGTGGCAGCTGGGAAAAATATGGCCTAAACTAGCCCAGTATTGGACCAAAGGAGACTAACGTTACACCGAGGACCTTACATGTTCTGATTTACAAGGGCGAATTGGCTCTGGAagccaaaacaaatgacattacTCCATGTAAACAGGAAGCAATTCTCAATTGCGgtgttcagagacGCAGACCAGGTAGTTCACTCGGTCTTCCATCTGTTTTCCGTTAACAGGAGCTGCGACATGGAAATATGGCGGTGTGGGGACCCTAACCCTATAAGaatggtccaccacccgaaggagatccagccaactta
>XR_005047559.1
CCCTttttaatagagagagagagagagagagagagctgtcttCTTTATATGTAAATGTACCATCATAAATCATTCAAAAGCTAAGTGTATGGGTTGACATTGTTTGATTGTGTTGGTATAATGTGAAATCAGCATTTTAAGGCATGTTGCACAAAGTTGTTTACAGGATGATAGTGTGGACATTAGATTGTCCACAGGTCATTACTTTTATTGGTTAAATATTAGCCATTCTATCCACCTCTGAGGACAGTGTTCGCACGCAAATGCACTGTTCGACCACTGGGGTCATTTACATAATGACATCATTTTCCCATTCAGTGATTCTCTGGTGGGGTGATTGGGCACTGTAACAACAATGGGTTTCTAACTGTGAAGTAAAACATCACGATatgtactattattattatattgtttatTATTACAAGTAATTTTGGATTTTAATCATTACCCTAAGATAAGTGAACATCCCCTACTACAGTGGTTCTCGAACCTCTGCTCTGGGACACCCAGATATCTCACAACTTGATTCACTTATCAAGGGCTTTATTATTAGTTGACTGTTCAGCTGTTCTGTCTGGAATAGTTCAAATACATTGAATGGCTGCGGACCCCAAAGGAGCAGTTTTGCTCTTATTTTTCTCAACTGAGAAAAAGGCTACCAGATGCCCCAGTGAGACCAATGGGATATCTAATGAAAATGAAGAACCGTGAACAGACCCCTTTTCTAGACAACTTCCAGGGACTAAACTGGTACTAAACTATGCTTTCTTAACATTCTGTATCTTCATGCAGATATAAACTCGACTAAAATGTACAAATATATTTATGTATAAAGTTGATTTAGGCTTTGCCTACAGGTACATGTCTTATATCGCCACAGGGTGGCGCAAATTCATGAGCACAGACAAAGAGACTAAAAACTTTGCATTGTGAAAAACGTGTCTCATTCCCTTTTTATTTTCATATCTGGTTTTAGACGAGACATAAGGAATACACATCGCATTTGATAAATACTGTGCATTATAATTTGTATTGCATACATTTATTTCTTAAAGGACTAGAAACTTTAACTTTACATTAAAAAAACTCAATTTCCGGTGTGCAGTCACAGTCCTTGTTTCCGTGAGCTGAAATTTTGAAAACTACTGCGAAAAGCTGACAGGAGTTCTGGGTCTAGGAACATCCGAAAATTGCTAAGTGTAAAGCTACAACAATCTGGGATTAGCTGTTTTATCAGAAAAATTGAACCCCCGACACTTGATTTATGGATGTGGCAGCTGGGAAAAATATGGCCTAAACTAGCCCAGTATTGGACCAAAGGAGACTAACGTTACACCGAGGACCTTACATGTTCTGATTTACAAGGGCGAATTGGCTCTGGAagccaaaacaaatgacattacTCCATGTAAACAGGAAGCAATTCTCAATTGCGgtgttcagagacGCAGACCAGGTAGTTCACTCGGTCTTCCATCTGTTTTCCGTTAACAGGAGCTGCGACATGGAAATATGGCGGTGTGGGGACCCTAACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005047558.1 False 1733 mRNA 0.39 3 48859331 48873896
XR_005047559.1 True 1536 mRNA 0.39 3 48872067 48873896

Neighbor

gene id symbol gene type direction distance location
LOC110520082 LOC106586202 coding downstream 34699 48798439 ~ 48824632 (-)
LOC110520077 LOC106586199 coding downstream 248970 48578036 ~ 48610361 (-)
slc38a11 slc38a11 coding downstream 406073 48448398 ~ 48453258 (-)
LOC110520074 LOC106586194 coding downstream 411044 48399830 ~ 48448287 (-)
LOC110520072 LOC106586192 coding downstream 459839 48353409 ~ 48399492 (-)
LOC118936376 NA coding upstream 5953 48879849 ~ 48881507 (-)
LOC110504168 LOC106581787 coding upstream 8168 48882064 ~ 48887719 (-)
LOC110504179 LOC106586206 coding upstream 32515 48906411 ~ 48966442 (-)
LOC118958916 NA coding upstream 172427 49046323 ~ 49047613 (-)
LOC110520089 NA coding upstream 173808 49047704 ~ 49051068 (-)
G267939 NA non-coding downstream 707 48856313 ~ 48858624 (-)
G267890 NA non-coding downstream 77831 48781285 ~ 48781500 (-)
G267888 NA non-coding downstream 78974 48777514 ~ 48780357 (-)
G267886 NA non-coding downstream 83932 48775030 ~ 48775399 (-)
G267885 NA non-coding downstream 84451 48774548 ~ 48774880 (-)
G267990 NA non-coding upstream 112461 48986357 ~ 48986607 (-)
G267991 NA non-coding upstream 112967 48986863 ~ 48987116 (-)
G268042 NA non-coding upstream 172878 49046774 ~ 49048127 (-)
ccdc173 ccdc173 non-coding upstream 181569 49055465 ~ 49075170 (-)
G268093 NA non-coding upstream 258051 49131947 ~ 49134168 (-)
LOC110505248 gcg other downstream 826029 48032036 ~ 48033434 (-)
G265988 NA other downstream 1259516 47599218 ~ 47599815 (-)
G263274 NA other downstream 3321789 45536332 ~ 45537542 (-)
LOC110520012 cssa21h2orf88 other downstream 3755068 45099333 ~ 45104286 (-)
G262993 NA other downstream 3847082 45010172 ~ 45012249 (-)
G268310 NA other upstream 621581 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 628520 49494001 ~ 49503025 (-)
LOC110520112 LOC106586230 other upstream 689952 49563841 ~ 49608114 (-)
LOC110520119 NA other upstream 993321 49867187 ~ 49871681 (-)
LOC110520121 LOC106581751 other upstream 1026277 49895327 ~ 49901575 (-)

Expression


Co-expression Network