LOC110504168 (LOC106581787)


Basic Information

Item Value
gene id LOC110504168
gene name LOC106581787
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 48882064 ~ 48887719 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110504168
ATGGAAGGATACAACATCACCTGGATTAATGGTTCAATATATGAAATAGCAGAGAGCGCAACGGTCTTCTGTGGGGTGGATATTGAAGCACGGATGACCATGTTTGCATATTACTACGCTTGTATTGGATTAGAATATTTCATTGTTAGTTATTTCCAAATTGTCCTCTGCGTATCTGCTTCTACAAGACAGATCCAGAGAATCAAGAAAACTTACTTTAGGAAGATCATGAGAATGTATATTGGTTGGTTTGACTGCAATTCAGTTGGAGAATTAAACACTAGGATGTCAGATGACATCAACAAGATCAGCGATGCTATAGCTGACCAGGTGTCTATCTTCATCAAGAGGATCTCCACTTTCATCTTCAGCTTCATGGTGGGGTTCATCAGAGTTTGGAAGTTGACCCTGGTGGTCATCACAGTAGGCCCACTTATAGGACTTGCTGCTGGGCTAATGGCCATGGCTGTTGCCAGACTGACAGTTCGGGAGCTCCAGGCCTATGACAAGGCAGGGGCAGTAGCTGATGAGGTACCGTCATCCATCAGAACAGTGGCAGCCTTTGGAGGAGAGGGTAAACATTTGAACAGGTATGACAAAAACCTTATTGAGGCTCCGAACTGGGGTGTGAAAAAAGGGGACGATCATTGGAGTGTTTCAAGGATACCTGCGGTGTGTCATCTTCCTCTGCTATGCTTTGGCATTCTGGTATGGTTCTAAACTGGTGATAAATGCTGCTGTAAGATTGTTCTTTGTGGTTCCCATGGCAGCTATGAACCTGAGTCAGGCCTCTCCCTGACTGGAAGCCTTCGCCTCAGGTCCAGCTGCAACCAAGACAATCTTTGATACCATTGACTGGGAGCCAGAAATCTATTGTTTCTCAGAGGAGGGTCACAAACTACAAGGTGAAGGCTGATATTGAATTAGACTACATCACATTTAACTTCCCCTTTCGACCAGAAGTAAAGGTAACCCTTTTTGCTCAGCTCTTTATTTTAGCAGGAGAAACCACAGCTTTTGTTGGGCCAAGTGGTTCAGTTTCTCATTCATGGGTGACTTTGGATGGCCGTGACATCTGCAGCCTGAACATCCAGTGCCTTCGCTCTCTGATTGGCATAACTATTGCTGAGAACATCCGCTATGGGTGACCATGGACGACATTATCCAGGCCACCAAGGAGGCTAACATCTATAACTTCATCATGGACCTACCACCGAGGTTTGATACACTGGTGGGTGAGGGTGGTGGtcagatgagtggaggacagaagaaGGATTCATATCGCCCACGCTCTGATCCACAACCCCAGGATCCTGCAGCTGGACATGACTACCTTGGCTCAACGAGAGTGAGGCTGTTACACAGGAGGCACTTGACAAGGTGGAGGAGCAGCTGAAAGGAATGGCAAGAgattttgaaaaagtcaaagcAGCTGCAGACACATTTGTTCAGTGGGCCAACAGGAAGTTGCAGGAACGGGATGGGGAAACAGAGCTGGAGTTAGAGATCACTCTGCCAACAAAAAGGGCTTGA

Function

NR:

description
PREDICTED: bile salt export pump-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110504168 True 1533 mRNA 0.47 11 48882064 48887719

Neighbor

gene id symbol gene type direction distance location
LOC118936376 NA coding downstream 557 48879849 ~ 48881507 (-)
LOC118958775 NA coding downstream 8168 48859331 ~ 48873896 (-)
LOC110520082 LOC106586202 coding downstream 57432 48798439 ~ 48824632 (-)
LOC110520077 LOC106586199 coding downstream 271703 48578036 ~ 48610361 (-)
slc38a11 slc38a11 coding downstream 428806 48448398 ~ 48453258 (-)
LOC110504179 LOC106586206 coding upstream 18692 48906411 ~ 48966442 (-)
LOC118958916 NA coding upstream 158604 49046323 ~ 49047613 (-)
LOC110520089 NA coding upstream 159985 49047704 ~ 49051068 (-)
ccdc173 ccdc173 coding upstream 169324 49055465 ~ 49075170 (-)
LOC110520100 LOC106586220 coding upstream 415314 49303033 ~ 49357448 (-)
G267939 NA non-coding downstream 23440 48856313 ~ 48858624 (-)
G267890 NA non-coding downstream 100564 48781285 ~ 48781500 (-)
G267888 NA non-coding downstream 101707 48777514 ~ 48780357 (-)
G267886 NA non-coding downstream 106665 48775030 ~ 48775399 (-)
G267885 NA non-coding downstream 107184 48774548 ~ 48774880 (-)
G267990 NA non-coding upstream 98638 48986357 ~ 48986607 (-)
G267991 NA non-coding upstream 99144 48986863 ~ 48987116 (-)
G268042 NA non-coding upstream 159055 49046774 ~ 49048127 (-)
G268093 NA non-coding upstream 244228 49131947 ~ 49134168 (-)
LOC110505248 gcg other downstream 848762 48032036 ~ 48033434 (-)
G265988 NA other downstream 1282249 47599218 ~ 47599815 (-)
G263274 NA other downstream 3344522 45536332 ~ 45537542 (-)
LOC110520012 cssa21h2orf88 other downstream 3777801 45099333 ~ 45104286 (-)
G262993 NA other downstream 3869815 45010172 ~ 45012249 (-)
G268310 NA other upstream 607758 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 614697 49494001 ~ 49503025 (-)
LOC110520112 LOC106586230 other upstream 676129 49563841 ~ 49608114 (-)
LOC110520119 NA other upstream 979498 49867187 ~ 49871681 (-)
LOC110520121 LOC106581751 other upstream 1012454 49895327 ~ 49901575 (-)

Expression


Co-expression Network