LOC118958916


Basic Information

Item Value
gene id LOC118958916
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49046323 ~ 49047613 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005047693.1
TTGACCTCAATCTGCTGGTACTTGATCCCATCTGCTGCCTGTGGCTGATTTCTTCCCGGAGGACCTGATTCGAGAAATCGTCAACGTGGATTTCCTTGCCAAGCTGGATTCCCAGTTAGAAAGTTTGTTATATAATTATATTAGAAATATCCCAATGAAGACAAAGCCAGCATCCTGTATCCCCTACTATCTGAAAACATTCTTTTCAGATAAAGCTAAAGGGATAAGAGAACCTCTCTGTTATGTGGTAGCCCTGCCTGACGTGCAGGCGGATCCGCCTGTGTCTCACGGAGCTGAATCGGTCTGTGTGGTTGGAGTGTCCAGAGCGGATTGGTGTTAAACTCAAAAGGTAATCAAATGTGTCACCTGTTCTAGTTGTGAGCTGTATTTCTTCTGATCTCCCTAGACTTTGAATGTGTTCTGGACAGACACCACCAGGCAGTGGCCTACAGTGAGCAGAGCCAGCtgcagattttttttctccctttttcaCTTACTCAGTGTTACTGTGGACGTCTTGGATTCCAAATCATTCTACAAACCGTCTCGTCACATGAAAGGGGAAATCATGATGAGAAAGACATCTGGAGATTCTGGGACACCATGTTGTCCAGATCCCTCATTTTGAATGGAACTATATGGAGCTCTCCACACTGGATGCATGGAAGGAATACCTTAGGAAGAAGATAGTTACTGAGCTTTCCTGAAGCACCTAGATGTTGGATCAATGacatgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatactgttttatatctttatgtttgaagcctgaaatgtggcaaaaggttgcaaagttcaagggggccgaatactttcgcaaggcactgtatattgcttTTGCTACTGATGTGAGAGACAAAGTCTGCCTTTGGAAATGTATATTTGCAGGCAGATCATTAACAATTGCTGTTATTGCCTACTCCGAATCCTAGAGTGGACATGCAGTTATCTCACCTCCTGCCAAGAGATTGTATCATATGAAGTGTAACGTTTGTCAAACAATAGTAAATGTGTGTAATAAGAAATAGCATTGTTTTTGTGGTATTGATACATCCAAATAATCTGTCCcacataaataaaatacaaaaa

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0004672 protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005047693.1 True 1203 mRNA 0.41 2 49046323 49047613

Neighbor

gene id symbol gene type direction distance location
LOC110504179 LOC106586206 coding downstream 79881 48906411 ~ 48966442 (-)
LOC110504168 LOC106581787 coding downstream 158604 48882064 ~ 48887719 (-)
LOC118936376 NA coding downstream 164816 48879849 ~ 48881507 (-)
LOC118958775 NA coding downstream 172427 48859331 ~ 48873896 (-)
LOC110520082 LOC106586202 coding downstream 221691 48798439 ~ 48824632 (-)
LOC110520089 NA coding upstream 91 49047704 ~ 49051068 (-)
ccdc173 ccdc173 coding upstream 9430 49055465 ~ 49075170 (-)
LOC110520100 LOC106586220 coding upstream 255420 49303033 ~ 49357448 (-)
LOC110520101 LOC106586223 coding upstream 342880 49390493 ~ 49413113 (-)
dlx2a dlx2 coding upstream 428365 49475978 ~ 49478117 (-)
G267991 NA non-coding downstream 59207 48986863 ~ 48987116 (-)
G267990 NA non-coding downstream 59716 48986357 ~ 48986607 (-)
G267939 NA non-coding downstream 187699 48856313 ~ 48858624 (-)
G267890 NA non-coding downstream 264823 48781285 ~ 48781500 (-)
G267888 NA non-coding downstream 265966 48777514 ~ 48780357 (-)
G268093 NA non-coding upstream 84334 49131947 ~ 49134168 (-)
G268122 NA non-coding upstream 131205 49178818 ~ 49179243 (-)
G268127 NA non-coding upstream 138061 49185674 ~ 49185920 (-)
G268137 NA non-coding upstream 148050 49195663 ~ 49195895 (-)
LOC110505248 gcg other downstream 1013021 48032036 ~ 48033434 (-)
G265988 NA other downstream 1446508 47599218 ~ 47599815 (-)
G263274 NA other downstream 3508781 45536332 ~ 45537542 (-)
LOC110520012 cssa21h2orf88 other downstream 3942060 45099333 ~ 45104286 (-)
G262993 NA other downstream 4034074 45010172 ~ 45012249 (-)
G268310 NA other upstream 447864 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 454803 49494001 ~ 49503025 (-)
LOC110520112 LOC106586230 other upstream 516235 49563841 ~ 49608114 (-)
LOC110520119 NA other upstream 819604 49867187 ~ 49871681 (-)
LOC110520121 LOC106581751 other upstream 852560 49895327 ~ 49901575 (-)

Expression


Co-expression Network