ccdc173 (ccdc173)


Basic Information

Item Value
gene id ccdc173
gene name ccdc173
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49055465 ~ 49075170 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597129.2
TTACTTGACCGTGGTTCTTCGATCACTCGCATTCTGATTGGTCTCTGTGTGTTCCCAGGTCTCCGCTCTACGCAGCTGGTATCCGGCCGCAAAAGCGTTGCTAGGATACATTGCAACAAATGTGTCCATCGTTACTGGATACAGTCCTACAGAAAACAGTCCGTCAAaggcacttttttttttacacaacgaCGTTGTAAAACTGTCTAGTGACAAGAAAAGTGCCATGCAACTTTGTGAGCTCTGAATGCTCTTTTTTAGATTCATACGATTGAAACCAAAATACATTCAGATCAAATGGAAACTGCGACTGTTGTCCGGTTTGGTCGAAGGAGTGGGTCCAGCAAAACAACGCTAGCAGTTGAGGAAAAAAAAGCAATGCAACCACCAGATCTTCGGCAAGTCACTGTTTTGCCCAAAGCCGAATGGCTCCGAATTCAAGGTAGTTTGAATCAAGGGAATAAATACAACGAGAGTCTAAAGGAAGCAACCAAACAACGAGAAGCTATGCACCTGAGGTCCAAGGAGGTGGTAAAATTCTGGTCTAACACAATAGCTGGACAAAGACAAAAGAAACTGGAGGCAAAGAGGATTCGGGAGGAACTTGAAGAAGATGAGAAGAAACAGATGGATATTGAGGAGGCTAAATATCAGGCGCAAAAGAGGAAAGAAGCTATTGAAAAGGCCAAAACTCAACAGTACTACGAGACTGATCGTGTGAAAGGATTTcatCGTGCACTCTTGCTGACAGAAGTCCTGAAGGAAAGGGAGGCCCAGATAGAACTGAAGCAGAGAAAGCAGGATACCTCCAAAGATGTGGACAAGGAAATCATGGCTATCATTAAGTGTAGAGAGGATGAAGCTTTGCAAAAGGAGCAGCAGAAAGCTTTGCAGAGGAAGCTTGACATCCAGGCCACAGCAGAAGACTTAAAACAGCAGGCAAAGGAACATGAGATGAATAGAGAACGGGAGAAACTGGAAAACAAGAAAGAGGCAGAGGAACTCCAGCGACTAAAAGAGCTTTTTCTGTGGGAGCAATGCATGCAGGAGCAAAAGAAAGAGGAGCAGAAGAGAAATACCATGAAAGCTCACATGGAGCATCTCTCTAACAGAGATATCATTAGAGCAATAGAGGCACAAAAgcaagagatggaagaggagcgCAGGAGGCTTTTTGCAAATGCAAAACAGAAAATGGTGAAGTTGAGGAAAGACAAAGAGGAAGAGATGTTCCGAGAGGTCCAAATGCACAGGGGGGGGATCATGAATGAACTGGCTGCAAAACAGCAGGAGCAGACGGACAATGAGGAACTCATCGCCAAGGCTATTGCTCAACAGGATGCCAGACAGGCACAGCAGCAGAAGGAGAAAGATGACAAGAGGATGGCTATGCTGGACTCAATTGCCTCACACAGAGAAGCCATGAAAGAAGAACAGGAGCAGAAGGAAAGAGAACACAACGAGAGAGCTATTGACATGCTTTATGCCAAGAAAGAAGCAGACAGAATATTTATTGAAAAACAACACCTGAAGGCACTGAAAATGAAAGAGGATGGAAGAACTTTACAAGACGTCTACATTCATCAAATGGCTGAAAAACGTGCCAAGGAACAGCACATAAGAAAGCAACAACAGGACTTTGAGACCAAAAATGCAGAGCTCATTGCTGTGGAGGAGAAGCAGTTCCAGCAGTATGCAAACAATGTGATCGATACAGCCACCGAGGCCAAGAGAAATATTCACCCACTCCGCAAAGCTGCCAGGGAGGGAATTGGAGGTGGTCTTGGCCCCATATTTGGAGGAGTGAGGCCAAGTTACTTGGTTCAAGATGACACTGGTGTCCAGATGCCCAATTACGTCGGCAGTAGATCTCAGGACGTCAAAGAGCTGAATGAGACACGTGATATTCAGCAATCCAAGAAAAGACTTGGATTCACATGGTAAACGTCTGTTGAAAAGAGTAACATGGTCAGGTGAAGCATGATtagaaaaacaataaaccaatggAATTCAGCATTTCCTAAGCATTTATGATATACCCCCTATTATGTAATTTATTTCACACTCAAAAAACCCACACTTGATAGGCAAGTACTTGACTGACCTAGTGGGATGATTGCAGTCTTTTCAGCGCTCAAAGATGATTCATCTCAGAAATATGGAAATGTAGAGTGTATAACTGTCTCTGAAATTAGATTTTTAGTTTTGTTATTTTACataatatacatacacacaattcAATTAAAACTAGTGCACAAATTGGGAAACTGCTGATAATttctagcctggtcctagatctgtacctacaTGACCAAGATAGTCAAGAGTTGGCTaaagcacagatctgggaccaggacaTATAGTGCAACGGTTTCATTTGAATACATAAGATTCACCCAGATTAAAATGTGACGTGTCAATGTTATCTTTATATCTATTGTATCAGTTGTCACTCTGTGAAACATTATAATAAACAATCTATAGGcaataaaacaaacattttaaccATATCCTTTTATTTTAAAACATGGTTCATTGGGGAATATTGAATTCGGCCCGTTTTTACAAAGCCAGTGGTTTTCATTTATAGTTTAAAGGAAAGTCATGCCCAGGAATTTAACACCTAGTATGAACTAACATGGAACTTCACAGCAATGTATTTACACATTGCTCTGGTGAGGAATTTTAAACATTTTGAAAGATGTAATGGGTGAAAATCAGAACATAAAATACTAACAAAAATGGATACAATTATACAAAACTAATTTGAGACTGAGGTCAAGATAAAAAGTTCTGGTTCCCtgaaacaggtaaaaaaaaaaaaaaaaagaactaaACGGTATACGCATCTAACACCCCAATCATTTCACAAAATGTCTGCACTCTTACCTGTCTTTCAAGTCAAATTGAGCCTTCTGACATCTCCACTTAAATATCAGCATACTAAAaaggaaagtttttttttttttttttttt
>XM_036974384.1
CTAAATCAAGTTGGCAAGCAAGCACGTTCTACGGAGAATATTGAGGGCCAAAACAAATTGCTTTCTGGACTGCAGCCGGGGCTACAGCGCCGCCTGACTGCTGCGGAAGTACCTTATGGTCAAAGGTTTTgCGCTAGCAGTTGAGGAAAAAAAAGCAATGCAACCACCAGATCTTCGGCAAGTCACTGTTTTGCCCAAAGCCGAATGGCTCCGAATTCAAGGTAGTTTGAATCAAGGGAATAAATACAACGAGAGTCTAAAGGAAGCAACCAAACAACGAGAAGCTATGCACCTGAGGTCCAAGGAGGTGGTAAAATTCTGGTCTAACACAATAGCTGGACAAAGACAAAAGAAACTGGAGGCAAAGAGGATTCGGGAGGAACTTGAAGAAGATGAGAAGAAACAGATGGATATTGAGGAGGCTAAATATCAGGCGCAAAAGAGGAAAGAAGCTATTGAAAAGGCCAAAACTCAACAGTACTACGAGACTGATCGTGTGAAAGGATTTcatCGTGCACTCTTGCTGACAGAAGTCCTGAAGGAAAGGGAGGCCCAGATAGAACTGAAGCAGAGAAAGCAGGATACCTCCAAAGATGTGGACAAGGAAATCATGGCTATCATTAAGTGTAGAGAGGATGAAGCTTTGCAAAAGGAGCAGCAGAAAGCTTTGCAGAGGAAGCTTGACATCCAGGCCACAGCAGAAGACTTAAAACAGCAGGCAAAGGAACATGAGATGAATAGAGAACGGGAGAAACTGGAAAACAAGAAAGAGGCAGAGGAACTCCAGCGACTAAAAGAGCTTTTTCTGTGGGAGCAATGCATGCAGGAGCAAAAGAAAGAGGAGCAGAAGAGAAATACCATGAAAGCTCACATGGAGCATCTCTCTAACAGAGATATCATTAGAGCAATAGAGGCACAAAAgcaagagatggaagaggagcgCAGGAGGCTTTTTGCAAATGCAAAACAGAAAATGGTGAAGTTGAGGAAAGACAAAGAGGAAGAGATGTTCCGAGAGGTCCAAATGCACAGGGGGGGGATCATGAATGAACTGGCTGCAAAACAGCAGGAGCAGACGGACAATGAGGAACTCATCGCCAAGGCTATTGCTCAACAGGATGCCAGACAGGCACAGCAGCAGAAGGAGAAAGATGACAAGAGGATGGCTATGCTGGACTCAATTGCCTCACACAGAGAAGCCATGAAAGAAGAACAGGAGCAGAAGGAAAGAGAACACAACGAGAGAGCTATTGACATGCTTTATGCCAAGAAAGAAGCAGACAGAATATTTATTGAAAAACAACACCTGAAGGCACTGAAAATGAAAGAGGATGGAAGAACTTTACAAGACGTCTACATTCATCAAATGGCTGAAAAACGTGCCAAGGAACAGCACATAAGAAAGCAACAACAGGACTTTGAGACCAAAAATGCAGAGCTCATTGCTGTGGAGGAGAAGCAGTTCCAGCAGTATGCAAACAATGTGATCGATACAGCCACCGAGGCCAAGAGAAATATTCACCCACTCCGCAAAGCTGCCAGGGAGGGAATTGGAGGTGGTCTTGGCCCCATATTTGGAGGAGTGAGGCCAAGTTACTTGGTTCAAGATGACACTGGTGTCCAGATGCCCAATTACGTCGGCAGTAGATCTCAGGACGTCAAAGAGCTGAATGAGACACGTGATATTCAGCAATCCAAGAAAAGACTTGGATTCACATGGTAAACGTCTGTTGAAAAGAGTAACATGGTCAGGTGAAGCATGATtagaaaaacaataaaccaatggAATTCAGCATTTCCTAAGCATTTATGATATACCCCCTATTATGTAATTT
>TU304518
TGGGGAATATTGAATTCGGCCCGTTTTTACAAAGCCAGTGGTTTTCATTTATAGTTTAAAGGAAAGTCATGCCCAGGAATTTAACACCTAGTATGAACTAACATGGAACTTCACAGCAATGTATTTACACATTGCTCTGGTGAGGAATTTTAAACATTTTGAAAGATGTAATGGGTGAAAATCAGAACATAAAATACTAACAAAAATGGATACAATTATACAAAACTAATTTGAGACTGAGGTCAAGATAAAAAGTTCTGGTTCCCtgaaacaggtaaaaaaaaaaaaaaaaagaactaaACGGTATACGCATCTAACACCCCAATCATTTCACAAAATGTCTGCACTCTTACCTGTCTTTCAAGTCAAATTGAGCCTTCTGACATCTCCACTTAAATATCAGCATACTAAAaaggaaagttttttttttttttacaaaaccaTTTTATATGTTTCACTTACAGTATGTTCTGTCACAATGAGACTGTTGGTAATTTAAacaatcaaaatgttgaaaataacCATATGATTAGTCATACATGTAATATTACTTGAGTCAGGCATATAGCCCAGAAAGACAAACTCATCCCTTCCATTATAATTATCACAATGGAATCACGTCCCCTCAGTAGGAGACCAGACTGAAAGAGAACATGTTTTATAAAACCTGACAAAAATGTTCCTTCCAACACTCACCTGTTCAGTCACTTCCTTACTCGACCATTAATAAACATTACATTCCCAACATTTGTCAAATTAGTCTGACAGCGGAAAAAAAATAACTAAAACATAAAATGGCTTTTAGCCGCTGTCAAATCTTATGAAATCTTAATTTGTACAAATATTCCAGAATTGGATCTGTTGTGATATCTAACAAGTGTCTAAAATAGGTCTACATCAGAACCTCACACATTATTAGGCATCAGCGCATTCATTTGTATGTTCAAGGATGGACAGGAATGAACATTTAGTGGACTAATCACTATCATCAGAACTGGACTTCTTTTTCTTGCTGTGGTTTTTATCCTTCTCTTGGCTCTTTGACTTTTGATTCCGCTCAGGGTTTTTCCCTGCATCTTTGGACTTGTGAGAGGACTCCTTTTCTGGGATGCCATCCCTTTTCTTCTTGGAGATGGGGCTCTTTCTACTTCTGTCCTTCCCTTTATTCTCCGAGTTGCTGCTCTTGGACCGCCTTCGTCTGTGAGTGTCTTCACTGTCTTTGTTCTTCCTCTGATGAGATGAACCGTCTTTGCTATGGTCTCTATTGTTGCTCTTACTCCTGGAGCGCCTGCCTCTACGCGAGTCCCTGCTCTTATTCTTGTCTGGACTCCTTGTCCGTTCTCTGCTCTTGGATCtacctctcctcttgtcctccctctctctgtggtgCTGTCTTTCCATGCTCTTACTGCGCTCCCTACCTCGCTCTCTGTCCCGTGCTTGCTCTTTGTCTCGAGATGAGGCACgtctccccctgtccctgcttCTGCTGTTAGATCGGTTTCGGTTCTTTCCAGAGTTCCTCTCCTTGCTTCTAGACTTTGTCCTCAGCTTCTCACCATTTCTCCCTTTTGTCTCCTTTCTGTTCTTAATGTCAGCCTCAGTGGGTTTAGCGCGTTCTTTACTTCTATCACAGGCTCTCTCTTTATTTAGGTTTCTGTCCTTGCTTCTTGAGCGGCCCCTCTTATCATCACTTTTGCCATGTTTctgatccctctctctgctttTGGACCTACAACTTTTCTCTTTGCTCCTACTGCGGCTTCGAGATTTGGCCTTCTTTGCCTTGTGTTTGTTATGCTTGTCTTCAGTTTTATTAGGGTCATTTTCTTTGCTCTTGGATCTATGAGAGCGacctttcttctccttctctctgttttgATTGGAGTTTTCAGCAGTGTTTTCATGCTTGGTTTCAGAagtcttcctccctcttcctcttggAGCTTTGCCACTCTCATTCCTGCTCTCTGTCAT

Function

symbol description
ccdc173 Orthologous to human CCDC173 (coiled-coil domain containing 173).

NR:

description
peptidyl-prolyl cis-trans isomerase G-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597129.2 False 2976 mRNA 0.41 9 49057043 49061418
XM_036974384.1 False 1835 mRNA 0.45 9 49057963 49075170
TU304518 True 1977 lncRNA 0.40 3 49055465 49057482

Neighbor

gene id symbol gene type direction distance location
LOC110520089 NA coding downstream 5975 49047704 ~ 49051068 (-)
LOC118958916 NA coding downstream 9430 49046323 ~ 49047613 (-)
LOC110504179 LOC106586206 coding downstream 90601 48906411 ~ 48966442 (-)
LOC110504168 LOC106581787 coding downstream 169324 48882064 ~ 48887719 (-)
LOC118936376 NA coding downstream 175536 48879849 ~ 48881507 (-)
LOC110520100 LOC106586220 coding upstream 227863 49303033 ~ 49357448 (-)
LOC110520101 LOC106586223 coding upstream 315323 49390493 ~ 49413113 (-)
dlx2a dlx2 coding upstream 400808 49475978 ~ 49478117 (-)
LOC118944672 NA coding upstream 418831 49494001 ~ 49503025 (-)
LOC110520112 LOC106586230 coding upstream 488671 49563841 ~ 49608114 (-)
G268042 NA non-coding downstream 8916 49046774 ~ 49048127 (-)
G267991 NA non-coding downstream 69927 48986863 ~ 48987116 (-)
G267990 NA non-coding downstream 70436 48986357 ~ 48986607 (-)
G267939 NA non-coding downstream 198419 48856313 ~ 48858624 (-)
G267890 NA non-coding downstream 275543 48781285 ~ 48781500 (-)
G268093 NA non-coding upstream 56777 49131947 ~ 49134168 (-)
G268122 NA non-coding upstream 103648 49178818 ~ 49179243 (-)
G268127 NA non-coding upstream 110504 49185674 ~ 49185920 (-)
G268137 NA non-coding upstream 120493 49195663 ~ 49195895 (-)
G268175 NA non-coding upstream 175688 49250858 ~ 49251144 (-)
LOC110505248 gcg other downstream 1023741 48032036 ~ 48033434 (-)
G265988 NA other downstream 1457228 47599218 ~ 47599815 (-)
G263274 NA other downstream 3519501 45536332 ~ 45537542 (-)
LOC110520012 cssa21h2orf88 other downstream 3952780 45099333 ~ 45104286 (-)
G262993 NA other downstream 4044794 45010172 ~ 45012249 (-)
G268310 NA other upstream 420307 49495477 ~ 49495803 (-)
LOC110520119 NA other upstream 792047 49867187 ~ 49871681 (-)
LOC110520121 LOC106581751 other upstream 825003 49895327 ~ 49901575 (-)

Expression


Co-expression Network