dcaf17 (dcaf17)


Basic Information

Item Value
gene id dcaf17
gene name dcaf17
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49357526 ~ 49364818 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597155.2
TGTTATGACTTGCCTGCTATGAACTTAATGTTGTGCTGTTACGTTAGCACTTTCTATTGAAAAGGATGATGCTACGGAGTTTAGTTGATAGGTAATCGACTAGCTGGGCTGTTCCCCTGACCCCTATGTAGGGACTTGTACAATACTTGAACATGGCTATTGAACTTTATTCTTTAATCTAACATATCATACAGAAACAGTAACCAGGAgcggtatggtgttgatatcttGTATATATCAAAAGAGCAAAAGGAGCGTGCATTGAGGCTCGCAAAGTTATCAACGCAGGAAGTGGACAGCTTTGATTGTCGGAGCAGGGCACCAGTTAAAGGTATTATCTCTGGCGTCCCGTTGGACATTGACAATCAGGAGTAGTTGAATGTAAAATGTTGCAACTGTGACGGGGATCACATTTCCGAATTCCCTGAGTGCCCTGTTAGAGTGAAAGAGGTTGAGGTGTCAAGGATCAGGGCTGTACAGCAAATCTCCTATGTGGAGGCGGTGAAGAGAGTTCTGAATAAGATATTGTATATCTCAATCAAGTGGTCTGGATACACTTATTGTGAAGAAGGTGGATTTTGTACCATCCAAGAAGTCCAAGAAAGCAGACATCATTATATCTGCAGCTGAGAAGTTTTTGGGCCTCCAAGACTTAACCACAGAAGCACTGCAAGGACTATTGTCGCCAGGAAATGTCCAGCCATCacaggatccttctgggcctgtgtagGGACCTGATTAAAACAGAAACGCAGGCTGATTTAGTTTTTAAAAAATTCGTTATTGATAGTTTgtatggaatatatatatatatatatattatttaataaTTACCCCGCATTTTTTCCCTTTCGGATCTTTATTTTCCActtgtacagtaggtggcggaatGCACACGTAATTGTCGCAAAAGCTCTTACACCAAAGAAGAAGGAGGGTGGGGCGGAACACCTACTATGTGAAGTTTAGTAATTCAATTCGCCCTTGACCTCCTAAACGATTTTGTTTTTAAAAATACTTTGGCGAAAGGTAACGTCTACAAAACGCtgtccactctgtttgttacagattctagttttggaaactgaaaactgtatggagatcaaatgtttcatcgttGAGATAATCTGAAGAATTCCGGTCAAAATCCACCTCGCTCTATCGTCTCCCACTGCCGACTGCTGGTCTTtctctcatccccatatttggtagtgagcgGAAACGctaaccggatgcttcacatttatacatccggtgaaatatatGGCTCGTTCTATCTGCGATCACTGTGTATCTGATGCTAAGGACACGTCGTTTTAGCAGTCGTGATAGTTATGACTATTTAATTATCGTGTTCTAAAGGACGAGGTTTGTGTATACGTAGTATTTGGTTGTAAATTAATCATTGACATGGTTGGAAGTATCGAATACCGACGTGGATAACAGTTGAACTGCGCTTGCTTTGTTTTGGACACACTGGTGTTATTGTGTGGAGTGTTCCAGCCCCTGTGCATTGAGCGCCTCCTAGTGATGCCTCAGCTGAGAGGGAAAAATGTTGCAACCTACCTAGACCTGAGATCGAGAGGCATTTTTGATGCTGGCACTTTGTCAAAACTCAACTTGAAGATTCTTAGGGGTCTTGTCCTCCAGGACAGCAAAGACTTCACCAAAGTCTGGACCAAGTCCTCAAAATCCACTATATTTTATGAGAGTGGGAGGATATATTTTGAAAATTATCAGTGTTGCTTCAGTAGCCTTCCATCTGAGCCACAACTTCTGTATGAATTACCCAAGCGGTCCAAAGCGGAGAAGATTGAAGATGCATTGCTATGCCAGTGCCCTCTTGACAAAGGGTTGCCAACACCGTCAGATCAAAAACCTAGCCTCTTGGCCCTGACTAGCAATAATTGGCTGTATCGCTTCTCAGCTGTGACAGGACAACAATTGGAGAAAGTTTACTTGTCCCCACATCACAAGTTCAGATACCTTGGCTGGGATGTATCGCAGGAGACATTTTATGTCAAGTCCATTCAGAATAAAGTGACATCTTCAGCAAGACAGGCAGGTTTCAACCAAAACACCTTGCTGTACCTCGCCGTGTTCCGCGTTTTCCCCCTGCAACTTGTGGGCGTTCTGGAGATCAACAAAAGTATATTTGGAAGCACCGtcattgatgtagttctgtcccaAGGGGTCCTTGCGGTTTCTCACAGTACCAAGACTGTGAAGCTCTACAGCTTTGAAGACATTCTGAATAAGTACATAAGAACGGAATTGGTTCTTGGGGAGCAGTGTCATTCAGAAGGCGGTAAAACTGTGGGAGAAGCTCCATTTGGCATTCCAGTGAATATCCACATCAACGAATGCCCCCCAGTGCTGTTTGAGGTGTCATGCTTTGATAATGGAGTACAGATCGGAGGCCATCCATGGCACTATATCTTCACCCTACCCCATAAGAAGCACCAGGGGTCGTACCGCATCTGCTCTCTCAAGGATAACACCCTGGCAAAGCATGGAATACAAGACATGAAGTGCTGTTCTCTGGAGTCTGACTGGATCTACTTTCACCCTGATGACTCAGGAAGAATCATCCATGTTGGACCTAGCACCATAAATGTGCTGAAGATTCTGAGTGAACTGGAGAGTGATTCACAGTTCGATATAGTGAAGGAGTTTTCCATCACAGCTCATCGAGACAATGCTGCCTCCCAGATCAATGTCACTTCCTCAGGCCGCACAGTGAAGAGAAGATTTTATCAGCTGGATGATGACCCAGACCGAGAGACATTCCGGATGGTGGAGTATGAGGATGAGCTTGACCTTCTAGCTGTTGTGGAGGTGACCcacagagaggatgaggggaaggCCCACGTCAGACTCCATGACAACAACACTGGAGCGTTACTGAAGAGGGTTCCACTTGTGGAGTCATGGGATGTGACTTACAGCCACGAGCTGTTCTTTGACAGAGATACAATTGTTCATATTGAACAGACGAAGAATAACTTCTGCTGCCATGTCTACAAAATCAGTCGTGGACAAGCAGATGAGTGAAGTTGAGACAATCCTTCCAATTGCTAATGATGTTAGTCAAAAAGATTCCTCAAGTAAATAGCCCTGTTGAATGTTTTCCTAGTTATTTTTTATACTTTCTTTCCCAATAAGGACTACATGTTGTCATTCTGTTATTTTGAAGATGTTGTTGGTACTCTAATAAAGTGTCTGAAATAGTTTTTCCAATACAACTGTTGGCTAACTGAGCTACCTCTGCATTTTATATTTTAGGACATATGAATTAAGCCACAACATTTCTAAATGAACTGATGAAAATAGTTGTTCATGTTTGATCATCTGAGAAGAGCTGTGAATTTAGGTTCTCTGATCTTTTTTAACCGCATGTAAGCACATTCCTGccacccaaaaataaaaataaataattgtcaaGA

Function

symbol description
dcaf17 Predicted to act upstream of or within protein ubiquitination. Predicted to be located in nucleolus. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Human ortholog(s) of this gene implicated in Woodhouse-Sakati syndrome. Orthologous to human DCAF17 (DDB1 and CUL4 associated factor 17).

NR:

description
DDB1- and CUL4-associated factor 17

GO: NA

KEGG:

id description
K23331 DCAF17; DDB1- and CUL4-associated factor 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597155.2 True 3446 mRNA 0.43 14 49357526 49364818

Neighbor

gene id symbol gene type direction distance location
LOC110520099 gors2 coding upstream 56750 49296162 ~ 49300776 (+)
gad1a gad1 coding upstream 75562 49266948 ~ 49281964 (+)
LOC110520096 LOC106586217 coding upstream 99893 49255350 ~ 49257633 (+)
myo3b myo3b coding upstream 108274 49135871 ~ 49249252 (+)
ubr3 LOC100380624 coding upstream 223356 49088713 ~ 49134170 (+)
LOC110520104 LOC106586222 coding downstream 1124 49365942 ~ 49368341 (+)
dync1i2a LOC106586225 coding downstream 3944 49368762 ~ 49390595 (+)
hat1 hat1 coding downstream 48674 49413492 ~ 49430082 (+)
dlx1a dlx1 coding downstream 99833 49464651 ~ 49470746 (+)
itga6a LOC106586229 coding downstream 165160 49529978 ~ 49557537 (+)
G267235 NA non-coding upstream 55971 49301268 ~ 49301555 (+)
G267099 NA non-coding upstream 72423 49283571 ~ 49285103 (+)
G267217 NA non-coding upstream 103312 49253953 ~ 49254214 (+)
G267214 NA non-coding upstream 106394 49250783 ~ 49251132 (+)
G267215 NA non-coding upstream 107912 49249433 ~ 49249614 (+)
G267308 NA non-coding downstream 82707 49447525 ~ 49447786 (+)
G267309 NA non-coding downstream 83730 49448548 ~ 49448806 (+)
G267315 NA non-coding downstream 88910 49453728 ~ 49453950 (+)
G267324 NA non-coding downstream 101055 49465873 ~ 49466114 (+)
G267347 NA non-coding downstream 130779 49495597 ~ 49495810 (+)
LOC110520046 LOC106586167 other upstream 2525282 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 3172722 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 3278101 46075484 ~ 46079425 (+)
G263710 NA other upstream 3423108 45934119 ~ 45934418 (+)
G263547 LOC106586150 other upstream 3518046 45838921 ~ 45839480 (+)
G267358 NA other downstream 145985 49510803 ~ 49512475 (+)
G267381 NA other downstream 189680 49554498 ~ 49555838 (+)
G267529 NA other downstream 471799 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 797483 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 1237484 50601983 ~ 50618761 (+)

Expression


Co-expression Network