LOC110520104 (LOC106586222)


Basic Information

Item Value
gene id LOC110520104
gene name LOC106586222
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49365942 ~ 49368341 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597156.2
AACCTGCGATTACAAAACTGGTAGTTAAAAACATTCAGACCTTCTGTTATGAAGAAGAGTCATGACCCATCCCCCCTGAGTAACCTCTTGAAATTCCTCTAGTCCGGTGTTGAAGTGCGTTCGTCGGAGATGGCGATGGAGAATTTCAAGCAGTTCCTGTTCGCGCTGTCGGCCGCTGTATCCGTTGGTTTTGTGTCGATAATTTTTGTTTTGAGATGGGTCTTCTACTTCAAGGAAGGTTTAGCATGGGATGGAGGATTTGCGGAATTCAATTGGCACCCTGTTTTAATCGTTACCGGGTTCATTTTTATGCAGGGAATTGCCATTGTGGTGTATAGGTTGCCATGGACCTGGAAGTGCAGCAAGTTAATGATGAAGTTTATTCATGCTGGCTTAAACATATTGGCCTTCATTTTCGCTGTCATATCTCTGGTAGCAGTATTTGACTTCCACAATGCACAAATCATCCCCAACATGTATAGCCTGCACAGCTGGGTGGGGCTAGCAGCGGTGATACTATATTCACTACAGCTTGTTCTGGGAGTGTGTATATACTTGATACCCATCACCCCGACATACCTGAGAGCAGCATTTATGCCCCTGCACGTCTACAGTGGCCTGTTCATCTTTGCCAGTGTCATAGCCACAGCACTCATGGGCATCACAGAGAAGCTCATTTTTGGCCTgaAAAATCCCAAGTACAAGGACTCTCCCCCAGAGGCCAACTTTGTGAATGTGCTGGGAGTATTGATAGTTGTTTTTGGCGCAATAATTCTCTGGATCGCTACTCGCCCCTCTTGGAAACGCCCCAGTGAGCAGGTCCTGCGCTCCCTGCCAACTTACAGGGATGGGTCAGCTGGCACCAAAATGGGCACTGCCCTGTCACAACAAACTGACCCGATTGACCCCGAAGGCAATGGAGATGCCAGGAGAAGGAGTGGTAAATTGGAGGACTCAGGACAGGTCAACTGAGTAACATGAAAACCAACTGCTGGTTCTGTCTGTTTGTTGATGCTTTAAGAAGTTGCATGGATCTACTGTTCTGGCAGTCCCAAAGCAAATGTAAACCTTTCTATTAACTATTGTTCCAAATAGCACCTTGAGGAATTGTTCCCAACCATTCCAGAATGTTGACCTTTAAgcagttttttattttgtaattttttacaaataaattacACAGCTCAATTTGA

Function

NR:

description
cytochrome b reductase 1

GO: NA

KEGG:

id description
K08370 CYBRD1, Dcytb; plasma membrane ascorbate-dependent reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597156.2 True 1193 mRNA 0.45 4 49365942 49368341

Neighbor

gene id symbol gene type direction distance location
dcaf17 dcaf17 coding upstream 1124 49357526 ~ 49364818 (+)
LOC110520099 gors2 coding upstream 65166 49296162 ~ 49300776 (+)
gad1a gad1 coding upstream 83978 49266948 ~ 49281964 (+)
LOC110520096 LOC106586217 coding upstream 108309 49255350 ~ 49257633 (+)
myo3b myo3b coding upstream 116690 49135871 ~ 49249252 (+)
dync1i2a LOC106586225 coding downstream 421 49368762 ~ 49390595 (+)
hat1 hat1 coding downstream 45151 49413492 ~ 49430082 (+)
dlx1a dlx1 coding downstream 96310 49464651 ~ 49470746 (+)
itga6a LOC106586229 coding downstream 161637 49529978 ~ 49557537 (+)
pdk1 pdk1 coding downstream 191744 49560085 ~ 49563837 (+)
G267235 NA non-coding upstream 64387 49301268 ~ 49301555 (+)
G267099 NA non-coding upstream 80839 49283571 ~ 49285103 (+)
G267217 NA non-coding upstream 111728 49253953 ~ 49254214 (+)
G267214 NA non-coding upstream 114810 49250783 ~ 49251132 (+)
G267215 NA non-coding upstream 116328 49249433 ~ 49249614 (+)
G267308 NA non-coding downstream 79184 49447525 ~ 49447786 (+)
G267309 NA non-coding downstream 80207 49448548 ~ 49448806 (+)
G267315 NA non-coding downstream 85387 49453728 ~ 49453950 (+)
G267324 NA non-coding downstream 97532 49465873 ~ 49466114 (+)
G267347 NA non-coding downstream 127256 49495597 ~ 49495810 (+)
LOC110520046 LOC106586167 other upstream 2533698 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 3181138 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 3286517 46075484 ~ 46079425 (+)
G263710 NA other upstream 3431524 45934119 ~ 45934418 (+)
G263547 LOC106586150 other upstream 3526462 45838921 ~ 45839480 (+)
G267358 NA other downstream 142462 49510803 ~ 49512475 (+)
G267381 NA other downstream 186157 49554498 ~ 49555838 (+)
G267529 NA other downstream 468276 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 793960 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 1233961 50601983 ~ 50618761 (+)

Expression


Co-expression Network