LOC110520101 (LOC106586223)


Basic Information

Item Value
gene id LOC110520101
gene name LOC106586223
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49390493 ~ 49413113 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974412.1
agttgtttatttattttggatGAGGACTTAAGCTTATTGATGCGGAAGCATATattatttactttttttaaacGAACAGAATGGTCCTCTTTCAGCATCTTTCCGTGGGCACTTCGGCCTTGGAGAGCGAATTGAGTAATGTTTACGTTGTTACAGATTTTCGTTTACTGATTTAATGGAAGTTGTTCAGCTACTTTAATAGTATAACAAGTTTATTGCTGTGAAGGTCGAGTAGCCGGTTCAGTAATGATAATGGAAAAGGTAGAAACAACCGCAAGAGGCGATTCCAATGCACTAAGGACTATATTTCTGAAGTATGCCAGTGTGGTTGAGAATGGGGTGCGTTACATGTCCCCCAGGGACTTTGTGCAGAACTTCCTGGGTCTGCACAACCAGCCCGACCATAACCGCAAGACTGTGCAGCTGATTGCTGGAGTAGCCGACACCAGCAAGGATGGCCAATGTGCGAGACATCTTCAGCCAGACCACAGTGCACCACCACATCCCCTTCAATTGGGACTGTGAGTTTATCAGGCTCCACTTTGGCAGTGACAGAAAGAAGAACCTCAGCTATCTGGAGTTCACCCAGTTTCTgcaggagctgcagttggaGCATGCCCGCCAGGCCTTTGCCCAGAAGGATAAGAGCAAGAGCGGTACCATCTCTGCCATGGACTTCAGCGACATCATGGCCACCATCCGCCACCACATGCTCACCCCCTTTGTGGAGGAGAACCTGGTCTCAGCCGCTGGAGGCAGCACCTCCCACATGGTGAGCTTCTCCTACTTCAATGCCTTCAACGCCCTCCTTAACAACATGGAGCTGATCCGCAAGGTCTACAGCACACTAGCCGGACCATACAAGGATACCCTCGTCACCAAAGAGGAGTTTGTTAGTGCTGCCAACAAGTTTGGTCAGATCAATCCAATGGAAATTGACATCCTGTACCAGCTCTCTGGCCTTTACGCTCATTCTGGAAAGCTCAACTTGGCGGACATCGAGAGGATAGCACCGTTGGAGGAAGGCGCACTCCCATACCACCTGGCTGAGATCCAAAGACAGCAAGCTCATGGGGATCCTCATCGGTCCGTCTTGCTCCAGGCTGCAGAGTCTGCTTACAGGTTCGGTCTGGGCGCACTCGCTGGAGCCACGGGTGCGACAGCTGTGTACCCCATTGACCTGGTGAAGACCCGTATGCAGAACCAGCGCTCCACCAGCTCCTTCGTAGGAGAGCTCATGTACAAGAATAGCTTTGACTGTGCCAAGAAAGTGCTCCGATATGAGGGATTCTTTGGATTCTACAGAGGTCTCGTACCACAGCTTATCGGTGTTGCCCCAGAGAAAGCTATCAAACTCACGATGAATGACTTTGTAAGAGACAAATTCACCACAGAGGATAACACCATTCCCTTGTTTGCAGAAGTCCTGGCTGGTGCCACTGCTGGAGGATCCCAGGTGATCTTCACCAACCCTCTGGAGATAGTCAAGATCCGTCTCCAGGTGGCCGGAGAGATCACCACGGCCCGCAGGGTCGGTGCCCTGACCGTGGTCAGGGACCTGGGCCTCTTTGGCCTCTACAAAGGAGCGAAAGCCTGCTTTCTGCGTGACATCCCGTTCTCTGCCATCTACTTCCCTGTGTACGCCCACACCAAGGCTGAGTTTGCAGACGAACAGGGCAGAATTGGACCTCTGCAGCTGCTCACTGCTGGTGCCATAGCAGGTATACCTGCTGCCTCCCTGGTGACCCCTGCTGATGTCATCAAGACCAGGCTCCAGGTGGCGGCCCGCGCAGGCCAGACCACATACAACGGAGTCATAGACTGCTTCAGGAAGATCATTGCTGAGGAGGGCTTCAGGGCCCTGTGGAAAGGAGCAGGAGCCCGTGTCTGCAGGTCCTCGCCACAGTTTGGTGTAACCTTGGTGACTTATGAACTCTTGCAGAGATGGTTCTACATTGACTTTGGAGGACATCGCCCCACCGGCTCTGAGCCAACTCCTAAGTCGAGGATCTCAGACCTTCCCCCTATAAGTGCTGACCACGTAGGAGGCTACCGTCTAGCTGCTGCCACATTCGCTGGCGTGGAGAACAAGTTTGGTCTACACCTACCCAAGTTCAAGTCTTCTGGAGCGGTGTCTGTTAGCTAAGCCCCAGCCCCGACCAAAGAGGAGCCTACAGCCTCATaggctgtctgtctccccctccgcACTTAACTGCTAAATGGCTGCATGCTCCTTGAGTCTTGTGTCCTAAAATATCTGTCCCTTCATTCCTCTGAAATGGTAAAGAAAATGGTCTCCTTCATTCATAGGCATTTGAAATACTTACTTTGAATGCTGCATGAATAGTGCTTCCTTGGTTAGTCTTTGTATAGCTCGCACAatgttactgtacattttttatttctgtGGAGAGGCATTTTTCATTGAAAAATTCCTCAAAGCGAGGCTGGTGAGAATGTCATCTCGTCAATCACATTTCAGAGACTTGAAAGGATGTACAGATGTTTTCGAAAGTATTTATTTTGAAATCATGACCAGGGTTTTGGAAAATCATTTAAATGTATCTATTGTATTTTGTTGAAATAAATCAAAATGGCTTAATTTTAA
>XM_021597151.2
TaagttgtttatttattttggatGAGGACTTAAGCTTATTGATGCGGAAGCATATattatttactttttttaaacGAACAGAATGGTCCTCTTTCAGCATCTTTCCGTGGGCACTTCGGCCTTGGAGAGCGAATTGAGTAATGTTTACGTTGTTACAGATTTTCGTTTACTGATTTAATGGAAGTTGTTCAGCTACTTTAATAGTATAACAAGTTTATTGCTGTGAAGGTCGAGTAGCCGGTTCAGTAATGATAATGGAAAAGGTAGAAACAACCGCAAGAGGCGATTCCAATGCACTAAGGACTATATTTCTGAAGTATGCCAGTGTGGTTGAGAATGGGGTGCGTTACATGTCCCCCAGGGACTTTGTGCAGAACTTCCTGGGTCTGCACAACCAGCCCGACCATAACCGCAAGACTGTGCAGCTGATTGCTGGAGTAGCCGACACCAGCAAGGATGGACTGATCTCTTTCCAGGAGTTTCTGGCCTTTGAATCGATTCTGTGTGTCCCGGATGCCCTTTTCATAGTTGCCTTTCAGTTGTTTGACAAGACTGGCACAGGGGACATCTCATTTGCCAATGTGCGAGACATCTTCAGCCAGACCACAGTGCACCACCACATCCCCTTCAATTGGGACTGTGAGTTTATCAGGCTCCACTTTGGCAGTGACAGAAAGAAGAACCTCAGCTATCTGGAGTTCACCCAGTTTCTgcaggagctgcagttggaGCATGCCCGCCAGGCCTTTGCCCAGAAGGATAAGAGCAAGAGCGGTACCATCTCTGCCATGGACTTCAGCGACATCATGGCCACCATCCGCCACCACATGCTCACCCCCTTTGTGGAGGAGAACCTGGTCTCAGCCGCTGGAGGCAGCACCTCCCACATGGTGAGCTTCTCCTACTTCAATGCCTTCAACGCCCTCCTTAACAACATGGAGCTGATCCGCAAGGTCTACAGCACACTAGCCGGACCATACAAGGATACCCTCGTCACCAAAGAGGAGTTTGTTAGTGCTGCCAACAAGTTTGGTCAGATCAATCCAATGGAAATTGACATCCTGTACCAGCTCTCTGGCCTTTACGCTCATTCTGGAAAGCTCAACTTGGCGGACATCGAGAGGATAGCACCGTTGGAGGAAGGCGCACTCCCATACCACCTGGCTGAGATCCAAAGACAGCAAGCTCATGGGGATCCTCATCGGTCCGTCTTGCTCCAGGCTGCAGAGTCTGCTTACAGGTTCGGTCTGGGCGCACTCGCTGGAGCCACGGGTGCGACAGCTGTGTACCCCATTGACCTGGTGAAGACCCGTATGCAGAACCAGCGCTCCACCAGCTCCTTCGTAGGAGAGCTCATGTACAAGAATAGCTTTGACTGTGCCAAGAAAGTGCTCCGATATGAGGGATTCTTTGGATTCTACAGAGGTCTCGTACCACAGCTTATCGGTGTTGCCCCAGAGAAAGCTATCAAACTCACGATGAATGACTTTGTAAGAGACAAATTCACCACAGAGGATAACACCATTCCCTTGTTTGCAGAAGTCCTGGCTGGTGCCACTGCTGGAGGATCCCAGGTGATCTTCACCAACCCTCTGGAGATAGTCAAGATCCGTCTCCAGGTGGCCGGAGAGATCACCACGGCCCGCAGGGTCGGTGCCCTGACCGTGGTCAGGGACCTGGGCCTCTTTGGCCTCTACAAAGGAGCGAAAGCCTGCTTTCTGCGTGACATCCCGTTCTCTGCCATCTACTTCCCTGTGTACGCCCACACCAAGGCTGAGTTTGCAGACGAACAGGGCAGAATTGGACCTCTGCAGCTGCTCACTGCTGGTGCCATAGCAGGTATACCTGCTGCCTCCCTGGTGACCCCTGCTGATGTCATCAAGACCAGGCTCCAGGTGGCGGCCCGCGCAGGCCAGACCACATACAACGGAGTCATAGACTGCTTCAGGAAGATCATTGCTGAGGAGGGCTTCAGGGCCCTGTGGAAAGGAGCAGGAGCCCGTGTCTGCAGGTCCTCGCCACAGTTTGGTGTAACCTTGGTGACTTATGAACTCTTGCAGAGATGGTTCTACATTGACTTTGGAGGACATCGCCCCACCGGCTCTGAGCCAACTCCTAAGTCGAGGATCTCAGACCTTCCCCCTATAAGTGCTGACCACGTAGGAGGCTACCGTCTAGCTGCTGCCACATTCGCTGGCGTGGAGAACAAGTTTGGTCTACACCTACCCAAGTTCAAGTCTTCTGGAGCGGTGTCTGTTAGCTAAGCCCCAGCCCCGACCAAAGAGGAGCCTACAGCCTCATaggctgtctgtctccccctccgcACTTAACTGCTAAATGGCTGCATGCTCCTTGAGTCTTGTGTCCTAAAATATCTGTCCCTTCATTCCTCTGAAATGGTAAAGAAAATGGTCTCCTTCATTCATAGGCATTTGAAATACTTACTTTGAATGCTGCATGAATAGTGCTTCCTTGGTTAGTCTTTGTATAGCTCGCACAatgttactgtacattttttatttctgtGGAGAGGCATTTTTCATTGAAAAATTCCTCAAAGCGAGGCTGGTGAGAATGTCATCTCGTCAATCACATTTCAGAGACTTGAAAGGATGTACAGATGTTTTCGAAAGTATTTATTTTGAAATCATGACCAGGGTTTTGGAAAATCATTTAAATGTATCTATTGTATTTTGTTGAAATAAATCAAAATGGCTTAATTTTAA
>XM_021597152.2
agtcaACGTGACTCTGCCAATATTTCTTATCAGAAATTAGTATTACCTGTATTTAAGTTGTTTATTTCTATTGGATGAGAACTTAAGCTTATTGATGCGGAAGCATATATGGAGAGAGAATTGAGTTATGTTTACCTTGTTACAACGTGTCGTTTACTGATCCAATGGAAGTTATTCAGCTACTTTAATAGTATAACAAGTTTATTGCTCTGAAGGTCGAGTAGCCGGTTAAGTAATGATAACGGCAATGGTCATCTTCAGAAGTGTCATGCTGTTATCACAGAATCAAAGGCTACAGTAGCCAAGCGCCTGCGCTGCTAGTCAACGTGACGTCACACCCAGCATGGCGGTCAAGGTAGAAACAACCGCAAGAGGCGATTCCAATGCACTAAGGACTATATTTCTGAAGTATGCCAGTGTGGTTGAGAATGGGGTGCGTTACATGTCCCCCAGGGACTTTGTGCAGAACTTCCTGGGTCTGCACAACCAGCCCGACCATAACCGCAAGACTGTGCAGCTGATTGCTGGAGTAGCCGACACCAGCAAGGATGGACTGATCTCTTTCCAGGAGTTTCTGGCCTTTGAATCGATTCTGTGTGTCCCGGATGCCCTTTTCATAGTTGCCTTTCAGTTGTTTGACAAGACTGGCACAGGGGACATCTCATTTGCCAATGTGCGAGACATCTTCAGCCAGACCACAGTGCACCACCACATCCCCTTCAATTGGGACTGTGAGTTTATCAGGCTCCACTTTGGCAGTGACAGAAAGAAGAACCTCAGCTATCTGGAGTTCACCCAGTTTCTgcaggagctgcagttggaGCATGCCCGCCAGGCCTTTGCCCAGAAGGATAAGAGCAAGAGCGGTACCATCTCTGCCATGGACTTCAGCGACATCATGGCCACCATCCGCCACCACATGCTCACCCCCTTTGTGGAGGAGAACCTGGTCTCAGCCGCTGGAGGCAGCACCTCCCACATGGTGAGCTTCTCCTACTTCAATGCCTTCAACGCCCTCCTTAACAACATGGAGCTGATCCGCAAGGTCTACAGCACACTAGCCGGACCATACAAGGATACCCTCGTCACCAAAGAGGAGTTTGTTAGTGCTGCCAACAAGTTTGGTCAGATCAATCCAATGGAAATTGACATCCTGTACCAGCTCTCTGGCCTTTACGCTCATTCTGGAAAGCTCAACTTGGCGGACATCGAGAGGATAGCACCGTTGGAGGAAGGCGCACTCCCATACCACCTGGCTGAGATCCAAAGACAGCAAGCTCATGGGGATCCTCATCGGTCCGTCTTGCTCCAGGCTGCAGAGTCTGCTTACAGGTTCGGTCTGGGCGCACTCGCTGGAGCCACGGGTGCGACAGCTGTGTACCCCATTGACCTGGTGAAGACCCGTATGCAGAACCAGCGCTCCACCAGCTCCTTCGTAGGAGAGCTCATGTACAAGAATAGCTTTGACTGTGCCAAGAAAGTGCTCCGATATGAGGGATTCTTTGGATTCTACAGAGGTCTCGTACCACAGCTTATCGGTGTTGCCCCAGAGAAAGCTATCAAACTCACGATGAATGACTTTGTAAGAGACAAATTCACCACAGAGGATAACACCATTCCCTTGTTTGCAGAAGTCCTGGCTGGTGCCACTGCTGGAGGATCCCAGGTGATCTTCACCAACCCTCTGGAGATAGTCAAGATCCGTCTCCAGGTGGCCGGAGAGATCACCACGGCCCGCAGGGTCGGTGCCCTGACCGTGGTCAGGGACCTGGGCCTCTTTGGCCTCTACAAAGGAGCGAAAGCCTGCTTTCTGCGTGACATCCCGTTCTCTGCCATCTACTTCCCTGTGTACGCCCACACCAAGGCTGAGTTTGCAGACGAACAGGGCAGAATTGGACCTCTGCAGCTGCTCACTGCTGGTGCCATAGCAGGTATACCTGCTGCCTCCCTGGTGACCCCTGCTGATGTCATCAAGACCAGGCTCCAGGTGGCGGCCCGCGCAGGCCAGACCACATACAACGGAGTCATAGACTGCTTCAGGAAGATCATTGCTGAGGAGGGCTTCAGGGCCCTGTGGAAAGGAGCAGGAGCCCGTGTCTGCAGGTCCTCGCCACAGTTTGGTGTAACCTTGGTGACTTATGAACTCTTGCAGAGATGGTTCTACATTGACTTTGGAGGACATCGCCCCACCGGCTCTGAGCCAACTCCTAAGTCGAGGATCTCAGACCTTCCCCCTATAAGTGCTGACCACGTAGGAGGCTACCGTCTAGCTGCTGCCACATTCGCTGGCGTGGAGAACAAGTTTGGTCTACACCTACCCAAGTTCAAGTCTTCTGGAGCGGTGTCTGTTAGCTAAGCCCCAGCCCCGACCAAAGAGGAGCCTACAGCCTCATaggctgtctgtctccccctccgcACTTAACTGCTAAATGGCTGCATGCTCCTTGAGTCTTGTGTCCTAAAATATCTGTCCCTTCATTCCTCTGAAATGGTAAAGAAAATGGTCTCCTTCATTCATAGGCATTTGAAATACTTACTTTGAATGCTGCATGAATAGTGCTTCCTTGGTTAGTCTTTGTATAGCTCGCACAatgttactgtacattttttatttctgtGGAGAGGCATTTTTCATTGAAAAATTCCTCAAAGCGAGGCTGGTGAGAATGTCATCTCGTCAATCACATTTCAGAGACTTGAAAGGATGTACAGATGTTTTCGAAAGTATTTATTTTGAAATCATGACCAGGGTTTTGGAAAATCATTTAAATGTATCTATTGTATTTTGTTGAAATAAATCAAAATGGCTTAATTTTAA

Function

NR:

description
calcium-binding mitochondrial carrier protein Aralar1-like

GO: NA

KEGG:

id description
K15105 SLC25A12_13, AGC; solute carrier family 25 (mitochondrial aspartate/glutamate transporter), member 12/13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974412.1 False 2608 mRNA 0.50 17 49390493 49412478
XM_021597151.2 False 2726 mRNA 0.50 18 49390493 49412480
XM_021597152.2 True 2818 mRNA 0.50 19 49390493 49413113

Neighbor

gene id symbol gene type direction distance location
LOC110520100 LOC106586220 coding downstream 33045 49303033 ~ 49357448 (-)
ccdc173 ccdc173 coding downstream 315323 49055465 ~ 49075170 (-)
LOC110520089 NA coding downstream 339425 49047704 ~ 49051068 (-)
LOC118958916 NA coding downstream 342880 49046323 ~ 49047613 (-)
LOC110504179 LOC106586206 coding downstream 424051 48906411 ~ 48966442 (-)
dlx2a dlx2 coding upstream 62865 49475978 ~ 49478117 (-)
LOC118944672 NA coding upstream 80888 49494001 ~ 49503025 (-)
LOC110520112 LOC106586230 coding upstream 150728 49563841 ~ 49608114 (-)
sp3a LOC106586237 coding upstream 381544 49794657 ~ 49802027 (-)
LOC110520118 LOC106586238 coding upstream 401658 49814771 ~ 49862076 (-)
G268160 NA non-coding downstream 31322 49358057 ~ 49359171 (-)
G268208 NA non-coding downstream 97640 49292629 ~ 49292853 (-)
G268207 NA non-coding downstream 98955 49291044 ~ 49291538 (-)
G268205 NA non-coding downstream 101001 49289270 ~ 49289492 (-)
G268204 NA non-coding downstream 104304 49285812 ~ 49286189 (-)
G268284 NA non-coding upstream 44352 49457465 ~ 49457956 (-)
G268286 NA non-coding upstream 46486 49459599 ~ 49459807 (-)
G268293 NA non-coding upstream 52775 49465888 ~ 49466196 (-)
G268299 NA non-coding upstream 62222 49475335 ~ 49475699 (-)
G268312 NA non-coding upstream 84767 49497880 ~ 49498326 (-)
LOC110505248 gcg other downstream 1357191 48032036 ~ 48033434 (-)
G265988 NA other downstream 1790678 47599218 ~ 47599815 (-)
G263274 NA other downstream 3852951 45536332 ~ 45537542 (-)
LOC110520012 cssa21h2orf88 other downstream 4286230 45099333 ~ 45104286 (-)
G262993 NA other downstream 4378244 45010172 ~ 45012249 (-)
G268310 NA other upstream 82364 49495477 ~ 49495803 (-)
LOC110520119 NA other upstream 454104 49867187 ~ 49871681 (-)
LOC110520121 LOC106581751 other upstream 487060 49895327 ~ 49901575 (-)

Expression


Co-expression Network