hat1 (hat1)


Basic Information

Item Value
gene id hat1
gene name hat1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49413492 ~ 49430082 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974420.1
agtagaggtccttgtgcatttcagGGATGAACCCAATGGAGAAGAAGTTGGCAGAATATAAGTGTGACACCAACGAAGCAATCAGCTTAAAACTAGTCCGTTTCGCAGATGATTTGGAGGATGAAAGCACGACATTCCATCCAGAGTACAGCCACCAGCTTTATGGTGATGATGAGGTGGCTTTTGGATACAAAGGCCTTCAGATTCAGCTGTACTACAGTGCTGGAAACCTGAGCACCCTCTTCAAAGTGAAATACTCAGCCAGAGTCACAGAAAAGTTTGATTGTGTGGAGCCTGATGATGTTGAAGGGAAGATCCGGGAGATCATCCCCGCTGGGTTCAGCTGCAACACGGACGACTTCACCTCATTGTTGGAGAAGGAGACCAACTTCAAACCCTTCGGCACCCTGCTTCACACATACAACGTCCACAatgtggaggagggagaagactTTACCTACCAGATTCACAAGGTGGACTTGTCGTGCCCTGGATTCCGAGAGTACCACAAGCGCCTGCAAACCTTCCTCATGTGGTTCATTGAGACGGCCAGCTTCATCGACGTGGACGACGATCGTTGGGACTTCTTTCTCGTATTTGAGAAGTACAATAAGGATGGGGAGACGCTCTTCGCAACTGTTGGCTACATGACAGTTTATAATTACTATGTGTATCCAGACAAAACCCGACCACGTGTGAGCCAAATGCTGATCCTGCCGCCGTTCCAAGGAGAGGGTCATGGAGCCCAGCTGCTGGAGGCAGTGCACATGTTCTACTGCAATCTGCACAAAGTACAGGAcattacagCTGAAGACCCCTCAGAGAACTATGTGAAGCTGAGAGACTACGTTCTGGTCAAGCTTTGCCAAACACTGCCATCATTCTCCACAGACAAGCTTCCTTTGGGCTTCAGTGACGACATGTCCACAGAGGCCAGGGAGAAATTTAAGATCAACAAGAAACACGCACGACGAGTGTACGAAATCCTGCGTCTGAGGGTGACGGACATGAGCGATGAGACGAAAGCAAGGGATTACCGTCTGGAGGTCAAAAAGAGGCTATTTGCCCCTACCAAGaAGAACCAGCGGGAGATGACCAAGATGATGAAGTGTCTGCGGCCAGAGGAGCTGGCGTCCCACATCAGTCAGATGGACACGGCGCTTCAGCAGGAGGAGCTGGAGAAGAGCTACCAGGAACTACTGGCCGAGTACAGGAGAGTCATCGAGAGGCTAGCACAGGCCTGATCCAGGGGGCCTAATGTCAGCCCTGCCTACCCACTGtaacacaacccccccccaccctggCCCCTTCTCCTACCCTTCCTCCTTTCCACTGGTGGTCCTAGATGTACAGTAGTGGTGGAGCTGTGCGGTGCAGCTGGTTGGCTGCCTGGGGAAGGCCCACTCTGTGTCCCTTGTGTGTAATCACGCTGTGTGAGCTTTAGTGATTTGGCAATCATTCACAGGTGATAGGAACACCATCCGTACGGTCTGGCTGGGCAGAACATGCCTCCTTTTCATATAGAGAATAAGGGagaaaggttttttttttttttcaatatctGTCTAGCTTTTTCCTGAAGACATGTTGGTTTTGAAGCACTTCATactgaaataaatgttttttttgtacaTTGA
>XM_021597158.2
GAGAGCGCGATGGTTAAAGAAAGGGATTTCTTCCGCGTACACCAGATGCGGCGGAAATACGTAAGCAAACAGGAAGTTCTTGGTGCGTATTTTCCGCGGGCCTTTGACGAAAACAGAGATGCAACAGTGTACAGAAATGGCGGGGATGAACCCAATGGAGAAGAAGTTGGCAGAATATAAGTGTGACACCAACGAAGCAATCAGCTTAAAACTAGTCCGTTTCGCAGATGATTTGGAGGATGAAAGCACGACATTCCATCCAGAGTACAGCCACCAGCTTTATGGTGATGATGAGGTGGCTTTTGGATACAAAGGCCTTCAGATTCAGCTGTACTACAGTGCTGGAAACCTGAGCACCCTCTTCAAAGTGAAATACTCAGCCAGAGTCACAGAAAAGTTTGATTGTGTGGAGCCTGATGATGTTGAAGGGAAGATCCGGGAGATCATCCCCGCTGGGTTCAGCTGCAACACGGACGACTTCACCTCATTGTTGGAGAAGGAGACCAACTTCAAACCCTTCGGCACCCTGCTTCACACATACAACGTCCACAatgtggaggagggagaagactTTACCTACCAGATTCACAAGGTGGACTTGTCGTGCCCTGGATTCCGAGAGTACCACAAGCGCCTGCAAACCTTCCTCATGTGGTTCATTGAGACGGCCAGCTTCATCGACGTGGACGACGATCGTTGGGACTTCTTTCTCGTATTTGAGAAGTACAATAAGGATGGGGAGACGCTCTTCGCAACTGTTGGCTACATGACAGTTTATAATTACTATGTGTATCCAGACAAAACCCGACCACGTGTGAGCCAAATGCTGATCCTGCCGCCGTTCCAAGGAGAGGGTCATGGAGCCCAGCTGCTGGAGGCAGTGCACATGTTCTACTGCAATCTGCACAAAGTACAGGAcattacagCTGAAGACCCCTCAGAGAACTATGTGAAGCTGAGAGACTACGTTCTGGTCAAGCTTTGCCAAACACTGCCATCATTCTCCACAGACAAGCTTCCTTTGGGCTTCAGTGACGACATGTCCACAGAGGCCAGGGAGAAATTTAAGATCAACAAGAAACACGCACGACGAGTGTACGAAATCCTGCGTCTGAGGGTGACGGACATGAGCGATGAGACGAAAGCAAGGGATTACCGTCTGGAGGTCAAAAAGAGGCTATTTGCCCCTACCAAGaAGAACCAGCGGGAGATGACCAAGATGATGAAGTGTCTGCGGCCAGAGGAGCTGGCGTCCCACATCAGTCAGATGGACACGGCGCTTCAGCAGGAGGAGCTGGAGAAGAGCTACCAGGAACTACTGGCCGAGTACAGGAGAGTCATCGAGAGGCTAGCACAGGCCTGATCCAGGGGGCCTAATGTCAGCCCTGCCTACCCACTGtaacacaacccccccccaccctggCCCCTTCTCCTACCCTTCCTCCTTTCCACTGGTGGTCCTAGATGTACAGTAGTGGTGGAGCTGTGCGGTGCAGCTGGTTGGCTGCCTGGGGAAGGCCCACTCTGTGTCCCTTGTGTGTAATCACGCTGTGTGAGCTTTAGTGATTTGGCAATCATTCACAGGTGATAGGAACACCATCCGTACGGTCTGGCTGGGCAGAACATGCCTCCTTTTCATATAGAGAATAAGGGagaaaggttttttttttttttcaatatctGTCTAGCTTTTTCCTGAAGACATGTTGGTTTTGAAGCACTTCATactgaaataaatgttttttttgtacaTTGA
>XM_036974419.1
TTTCGAGGGCGTGGTATGTTGCTGTCACAGGCAATCCAGATGGAAAACAAAcaagctagctagGGATGAACCCAATGGAGAAGAAGTTGGCAGAATATAAGTGTGACACCAACGAAGCAATCAGCTTAAAACTAGTCCGTTTCGCAGATGATTTGGAGGATGAAAGCACGACATTCCATCCAGAGTACAGCCACCAGCTTTATGGTGATGATGAGGTGGCTTTTGGATACAAAGGCCTTCAGATTCAGCTGTACTACAGTGCTGGAAACCTGAGCACCCTCTTCAAAGTGAAATACTCAGCCAGAGTCACAGAAAAGTTTGATTGTGTGGAGCCTGATGATGTTGAAGGGAAGATCCGGGAGATCATCCCCGCTGGGTTCAGCTGCAACACGGACGACTTCACCTCATTGTTGGAGAAGGAGACCAACTTCAAACCCTTCGGCACCCTGCTTCACACATACAACGTCCACAatgtggaggagggagaagactTTACCTACCAGATTCACAAGGTGGACTTGTCGTGCCCTGGATTCCGAGAGTACCACAAGCGCCTGCAAACCTTCCTCATGTGGTTCATTGAGACGGCCAGCTTCATCGACGTGGACGACGATCGTTGGGACTTCTTTCTCGTATTTGAGAAGTACAATAAGGATGGGGAGACGCTCTTCGCAACTGTTGGCTACATGACAGTTTATAATTACTATGTGTATCCAGACAAAACCCGACCACGTGTGAGCCAAATGCTGATCCTGCCGCCGTTCCAAGGAGAGGGTCATGGAGCCCAGCTGCTGGAGGCAGTGCACATGTTCTACTGCAATCTGCACAAAGTACAGGAcattacagCTGAAGACCCCTCAGAGAACTATGTGAAGCTGAGAGACTACGTTCTGGTCAAGCTTTGCCAAACACTGCCATCATTCTCCACAGACAAGCTTCCTTTGGGCTTCAGTGACGACATGTCCACAGAGGCCAGGGAGAAATTTAAGATCAACAAGAAACACGCACGACGAGTGTACGAAATCCTGCGTCTGAGGGTGACGGACATGAGCGATGAGACGAAAGCAAGGGATTACCGTCTGGAGGTCAAAAAGAGGCTATTTGCCCCTACCAAGaAGAACCAGCGGGAGATGACCAAGATGATGAAGTGTCTGCGGCCAGAGGAGCTGGCGTCCCACATCAGTCAGATGGACACGGCGCTTCAGCAGGAGGAGCTGGAGAAGAGCTACCAGGAACTACTGGCCGAGTACAGGAGAGTCATCGAGAGGCTAGCACAGGCCTGATCCAGGGGGCCTAATGTCAGCCCTGCCTACCCACTGtaacacaacccccccccaccctggCCCCTTCTCCTACCCTTCCTCCTTTCCACTGGTGGTCCTAGATGTACAGTAGTGGTGGAGCTGTGCGGTGCAGCTGGTTGGCTGCCTGGGGAAGGCCCACTCTGTGTCCCTTGTGTGTAATCACGCTGTGTGAGCTTTAGTGATTTGGCAATCATTCACAGGTGATAGGAACACCATCCGTACGGTCTGGCTGGGCAGAACATGCCTCCTTTTCATATAGAGAATAAGGGagaaaggttttttttttttttcaatatctGTCTAGCTTTTTCCTGAAGACATGTTGGTTTTGAAGCACTTCATactgaaataaatgttttttttgtacaTTGA

Function

symbol description
hat1 Predicted to enable H4 histone acetyltransferase activity. Predicted to be involved in histone H4 acetylation. Predicted to act upstream of or within chromatin silencing at telomere and histone acetylation. Predicted to be located in nucleus. Is expressed in several structures, including alar plate midbrain region; immature eye; liver; nervous system; and pectoral fin. Orthologous to human HAT1 (histone acetyltransferase 1).

NR:

description
histone acetyltransferase type B catalytic subunit

GO:

id name namespace
GO:0006348 chromatin silencing at telomere biological_process
GO:0016573 histone acetylation biological_process
GO:0005634 nucleus cellular_component
GO:0004402 histone acetyltransferase activity molecular_function

KEGG:

id description
K11303 HAT1, KAT1; histone acetyltransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974420.1 False 1637 mRNA 0.50 11 49413492 49430082
XM_021597158.2 False 1756 mRNA 0.50 11 49416164 49430082
XM_036974419.1 True 1676 mRNA 0.50 11 49416417 49430082

Neighbor

gene id symbol gene type direction distance location
dync1i2a LOC106586225 coding upstream 22897 49368762 ~ 49390595 (+)
LOC110520104 LOC106586222 coding upstream 45151 49365942 ~ 49368341 (+)
dcaf17 dcaf17 coding upstream 48674 49357526 ~ 49364818 (+)
LOC110520099 gors2 coding upstream 112716 49296162 ~ 49300776 (+)
gad1a gad1 coding upstream 131528 49266948 ~ 49281964 (+)
dlx1a dlx1 coding downstream 34569 49464651 ~ 49470746 (+)
itga6a LOC106586229 coding downstream 99896 49529978 ~ 49557537 (+)
pdk1 pdk1 coding downstream 130003 49560085 ~ 49563837 (+)
LOC110520113 LOC106586233 coding downstream 199164 49629246 ~ 49676777 (+)
zak LOC106586235 coding downstream 246847 49676929 ~ 49731937 (+)
G267259 NA non-coding upstream 27529 49333176 ~ 49385963 (+)
G267235 NA non-coding upstream 111937 49301268 ~ 49301555 (+)
G267099 NA non-coding upstream 128389 49283571 ~ 49285103 (+)
G267217 NA non-coding upstream 159278 49253953 ~ 49254214 (+)
G267214 NA non-coding upstream 162360 49250783 ~ 49251132 (+)
G267308 NA non-coding downstream 17443 49447525 ~ 49447786 (+)
G267309 NA non-coding downstream 18466 49448548 ~ 49448806 (+)
G267315 NA non-coding downstream 23646 49453728 ~ 49453950 (+)
G267324 NA non-coding downstream 35791 49465873 ~ 49466114 (+)
G267347 NA non-coding downstream 65515 49495597 ~ 49495810 (+)
LOC110520046 LOC106586167 other upstream 2581248 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 3228688 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 3334067 46075484 ~ 46079425 (+)
G263710 NA other upstream 3479074 45934119 ~ 45934418 (+)
G263547 LOC106586150 other upstream 3574012 45838921 ~ 45839480 (+)
G267358 NA other downstream 80721 49510803 ~ 49512475 (+)
G267381 NA other downstream 124416 49554498 ~ 49555838 (+)
G267529 NA other downstream 406535 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 732219 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 1172220 50601983 ~ 50618761 (+)

Expression


Co-expression Network