dlx1a (dlx1)


Basic Information

Item Value
gene id dlx1a
gene name dlx1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49464651 ~ 49470746 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597160.2
GAGAAGCCCAGTTATCCTTATAAGCGTTAATATTTTATAGAATTCTTCAAATCCAGAGATCCACTGTTAGATGCACATCGCAGACTAGACATTGCTCACCATGATGTCAGCGCTCGCATTTTCAAAACACATTCGTGAGGAGTTTGAGCTGCCGGGGGAACAGGCTAGTGGTGTTTTTGCTTTCGGCTCATCCACAGCAGAAGGACTCAACATAGGCCACATTGAAAAATAAAATGAAGATCAGGATGGTTGCTGCATCTTCGTCACCCTCAGTGAGTGGTGCGCAATGGAGTATTTCTGATCTCCGATATTGGGGATACATTTTCTTCTTTTTCATCACATGATTGTCGATATTAATTTATCAGGTCCAAAGGACCCAACCTCAGGATCGCCAATCGGCATCATTCTTGGATAGAGTGGACCAATCAGCGACCGTCTTTGATGAATATTCATGATCCCTGATTCAAACCTTTGAGCGAGTTTGTCTAGACCCAGTGCATCATACCTAGActtttcacagagacaaactacaTTTTCTTATGAATGGAAAGAGAAAAAATCAGTACAGCTTAAATTGGGATCCATCCTTCACTGAGATCatagaagaaaacaaaaaaggaagaggagagatccGCCAGAAGAGATGACAATGACTACAATACCAGAAAGTCTTAATAGCCCTGTCACAGGAAAACCCGTTTTCATGGAATTTGGGCCACCGAGTCAACAAATGTCGCCTTCCTCAATGTCTCACGGACACTATTCCATGCACTGTTTACATTCTGCTGGTCATACTCAACACGAGAGCTCGTACAGTCCAGCCTCATCTTTTCCTAGATCTTTAGGTTATCCATACGTTAACTCCGTCGGCAGCCATTCCTCAAGTCCATATCTCAGTACAGTGCAGTCGTACCAAAACAGCTCGGCACTAACACAGACACAGTTAGAAGATACAGCACCAGAGACAGAGAAGAACACAGTTGTAGAAGGCGGAGAGGTACGGTTCAATGGGAAAGGGAAAAAGATTCGCAAACCAAGGACTATCTATTCCAGTTTGCAGCTACAGACTCTAAACAGAAGATTTCAACAAACTCAATATTTGGCACTGCCAGAGAGAGCCGAGCTGGCAGCTTCAATGGGACTCACGCAAACACAGGTAAAGATTTGGTTTCAAAATAAGCGATCGAAGTTCAAGAAACTGATGAAGCAAGGTGGTGGAACAATTGACAACAACACTTTAGCCCAGTTTAATGGTCGCATATCTTCGACTGGCTCTCCGGTAGCACCGGTTTGGAGCTCACCGACCACGGTGAAAACATCCGTGGGTACACCAGGGTCTTACATTCCAAGTTACACCTCATGGTATCCAACTGCACACCAAGAGTCTATGCAGCAACCGCAACTAATGTGAACATAACAGTGAGATAAAAGACCTGCCCCGCCCTCTATACTATCATGGCCCATATCAGGAGATTTTGGGTCAACCACCCAGCGTGGCCTTGCACTGTCCCGCTGCAAACATGCACAGATGTAATCCGGAGTTTGCTCCCAAAGTTGCCAGCTGACATGTCGGCCTCCTCATGCCGACCGACGGGACAGAGAACAAGAGCCCTGTGAGCCGAGGGACTGAAAAGGCACCGTTCGCGCCCGAGGGCAACAAGTCCTTTCATGTCACCGACAGACACCGGAAATTGTTATGAAAAATGGGTCCTCAAGCTGCTCTTATTATCTTTTGTGACATTTTAATAGGCTATGTGTTAAAGTAAATATATTGAGCTGTAACAAGTCAGTGAGAGTAGGCTATATTTATGTATCCTATGTTTGATTTTAAGATTTGCTTAATTTCTTATCCCAAttatgattttaaaaaatggcGTATGAAGCCGCACGTTTCCAAGTATCAGATGTAGGTCATGCATCTCCAACGAAGGTCAACATAGTGATTTGACCATGACCTTAAAACCTTGATTTCAAACAGACAAAACTACCACTGGTCTACAATGTAACTTTGACCAACGAATGTAGGCCAATCCAATTAATAGTCTTATCATTTTGATGGGCATGGAATCGAATATCGAGTCCATCCCTTAGTTCTTTCCTGCGCCATTGCGCTAGCcacatgttgctaccatgctgttttgTGTGTTAATTTAAGTTAAATTATTTAGTTTTTTCAAAGTCTGTGTGTTTATTTAATATGCAGGTGTGTTTGACTTATGAAACGACAACAAAGTGTTGTAAATGCTGCTCTAATGCAAGCAAAACTCCTCTTCTACGACGGGAGCCCCAAACATTATGTGAAAAAAGTTTAAATGGCTAGTGGCTGCTTGAGAAGAGCACTAAGTTGATCCCGAAGATGAAAATATGGTTTGTCATTGTTTGTTATGTGTTGCGCGGGTGGTTGTACATAAGGACAAGATATAATATGATTTTTTTCAGCTTTGGTTTGTGCTGTAGCCTAATGATACATTGTGAAATAGGGTTTTTGTGTGTTCATTAAGATGAATGTGTTAAGCAGTCTATAGAAATATTTAGTTTTGTATTGATCACTTTAATTTATTGCTTTGTTTTATTGAAGTTATGTACATATTGttgaaaacagtaaaaaaaagtaTGATTTAAAAGGACAGTATAACGGTGTCAGTAATATTGTGTTTATAGGCATGGTGCTGGCCTAGCCAGTGGGGTGGTGGTAACGATTAGAAAGTAAAGTGAAACCCTAAAACAAGTCCATGTAGGCTTGCGATGTGACAGCTATTTCTTCAGGACGTTATATTTAAAACGAAATCGGTGGTAAGATACAATGTAATAAAATAAAGCCTCTATGGTTACTCA
>XM_036974421.1
GAGAAGCCCAGTTATCCTTATAAGCGTTAATATTTTATAGAATTCTTCAAATCCAGAGATCCACTGTTAGATGCACATCGCAGACTAGACATTGCTCACCATGATGTCAGCGCTCGCATTTTCAAAACACATTCGTGAGGAGTTTGAGCTGCCGGGGGAACAGGCTAGTGGTGTTTTTGCTTTCGGCTCATCCACAGCAGAAGGACTCAACATAGGCCACATTGAAAAATAAAATGAAGATCAGGATGGTTGCTGCATCTTCGTCACCCTCAGTGAGTGGTGCGCAATGGAGTATTTCTGATCTCCGATATTGGGGATACATTTTCTTCTTTTTCATCACATGATTGTCGATATTAAGTCCAAAGGACCCAACCTCAGGATCGCCAATCGGCATCATTCTTGGATAGAGTGGACCAATCAGCGACCGTCTTTGATGAATATTCATGATCCCTGATTCAAACCTTTGAGCGAGTTTGTCTAGACCCAGTGCATCATACCTAGActtttcacagagacaaactacaTTTTCTTATGAATGGAAAGAGAAAAAATCAGTACAGCTTAAATTGGGATCCATCCTTCACTGAGATCatagaagaaaacaaaaaaggaagaggagagatccGCCAGAAGAGATGACAATGACTACAATACCAGAAAGTCTTAATAGCCCTGTCACAGGAAAACCCGTTTTCATGGAATTTGGGCCACCGAGTCAACAAATGTCGCCTTCCTCAATGTCTCACGGACACTATTCCATGCACTGTTTACATTCTGCTGGTCATACTCAACACGAGAGCTCGTACAGTCCAGCCTCATCTTTTCCTAGATCTTTAGGTTATCCATACGTTAACTCCGTCGGCAGCCATTCCTCAAGTCCATATCTCAGTACAGTGCAGTCGTACCAAAACAGCTCGGCACTAACACAGACACAGTTAGAAGATACAGCACCAGAGACAGAGAAGAACACAGTTGTAGAAGGCGGAGAGGTACGGTTCAATGGGAAAGGGAAAAAGATTCGCAAACCAAGGACTATCTATTCCAGTTTGCAGCTACAGACTCTAAACAGAAGATTTCAACAAACTCAATATTTGGCACTGCCAGAGAGAGCCGAGCTGGCAGCTTCAATGGGACTCACGCAAACACAGGTAAAGATTTGGTTTCAAAATAAGCGATCGAAGTTCAAGAAACTGATGAAGCAAGGTGGTGGAACAATTGACAACAACACTTTAGCCCAGTTTAATGGTCGCATATCTTCGACTGGCTCTCCGGTAGCACCGGTTTGGAGCTCACCGACCACGGTGAAAACATCCGTGGGTACACCAGGGTCTTACATTCCAAGTTACACCTCATGGTATCCAACTGCACACCAAGAGTCTATGCAGCAACCGCAACTAATGTGAACATAACAGTGAGATAAAAGACCTGCCCCGCCCTCTATACTATCATGGCCCATATCAGGAGATTTTGGGTCAACCACCCAGCGTGGCCTTGCACTGTCCCGCTGCAAACATGCACAGATGTAATCCGGAGTTTGCTCCCAAAGTTGCCAGCTGACATGTCGGCCTCCTCATGCCGACCGACGGGACAGAGAACAAGAGCCCTGTGAGCCGAGGGACTGAAAAGGCACCGTTCGCGCCCGAGGGCAACAAGTCCTTTCATGTCACCGACAGACACCGGAAATTGTTATGAAAAATGGGTCCTCAAGCTGCTCTTATTATCTTTTGTGACATTTTAATAGGCTATGTGTTAAAGTAAATATATTGAGCTGTAACAAGTCAGTGAGAGTAGGCTATATTTATGTATCCTATGTTTGATTTTAAGATTTGCTTAATTTCTTATCCCAAttatgattttaaaaaatggcGTATGAAGCCGCACGTTTCCAAGTATCAGATGTAGGTCATGCATCTCCAACGAAGGTCAACATAGTGATTTGACCATGACCTTAAAACCTTGATTTCAAACAGACAAAACTACCACTGGTCTACAATGTAACTTTGACCAACGAATGTAGGCCAATCCAATTAATAGTCTTATCATTTTGATGGGCATGGAATCGAATATCGAGTCCATCCCTTAGTTCTTTCCTGCGCCATTGCGCTAGCcacatgttgctaccatgctgttttgTGTGTTAATTTAAGTTAAATTATTTAGTTTTTTCAAAGTCTGTGTGTTTATTTAATATGCAGGTGTGTTTGACTTATGAAACGACAACAAAGTGTTGTAAATGCTGCTCTAATGCAAGCAAAACTCCTCTTCTACGACGGGAGCCCCAAACATTATGTGAAAAAAGTTTAAATGGCTAGTGGCTGCTTGAGAAGAGCACTAAGTTGATCCCGAAGATGAAAATATGGTTTGTCATTGTTTGTTATGTGTTGCGCGGGTGGTTGTACATAAGGACAAGATATAATATGATTTTTTTCAGCTTTGGTTTGTGCTGTAGCCTAATGATACATTGTGAAATAGGGTTTTTGTGTGTTCATTAAGATGAATGTGTTAAGCAGTCTATAGAAATATTTAGTTTTGTATTGATCACTTTAATTTATTGCTTTGTTTTATTGAAGTTATGTACATATTGttgaaaacagtaaaaaaaagtaTGATTTAAAAGGACAGTATAACGGTGTCAGTAATATTGTGTTTATAGGCATGGTGCTGGCCTAGCCAGTGGGGTGGTGGTAACGATTAGAAAGTAAAGTGAAACCCTAAAACAAGTCCATGTAGGCTTGCGATGTGACAGCTATTTCTTCAGGACGTTATATTTAAAACGAAATCGGTGGTAAGATACAATGTAATAAAATAAAGCCTCTATGGTTACTCA
>XM_036974423.1
GAGAAGCCCAGTTATCCTTATAAGCGTTAATATTTTATAGAATTCTTCAAATCCAGAGATCCACTGTTAGATGCACATCGCAGACTAGACATTGCTCACCATGATGTCAGCGCTCGCATTTTCAAAACACATTCGTGAGGAGTTTGAGCTGCCGGGGGAACAGGCTAGTGGTGTTTTTGCTTTCGGCTCATCCACAGCAGAAGGACTCAACATAGGCCACATTGAAAAATAAAATGAAGATCAGGATGGTTGCTGCATCTTCGTCACCCTCAGTCCAAAGGACCCAACCTCAGGATCGCCAATCGGCATCATTCTTGGATAGAGTGGACCAATCAGCGACCGTCTTTGATGAATATTCATGATCCCTGATTCAAACCTTTGAGCGAGTTTGTCTAGACCCAGTGCATCATACCTAGActtttcacagagacaaactacaTTTTCTTATGAATGGAAAGAGAAAAAATCAGTACAGCTTAAATTGGGATCCATCCTTCACTGAGATCatagaagaaaacaaaaaaggaagaggagagatccGCCAGAAGAGATGACAATGACTACAATACCAGAAAGTCTTAATAGCCCTGTCACAGGAAAACCCGTTTTCATGGAATTTGGGCCACCGAGTCAACAAATGTCGCCTTCCTCAATGTCTCACGGACACTATTCCATGCACTGTTTACATTCTGCTGGTCATACTCAACACGAGAGCTCGTACAGTCCAGCCTCATCTTTTCCTAGATCTTTAGGTTATCCATACGTTAACTCCGTCGGCAGCCATTCCTCAAGTCCATATCTCAGTACAGTGCAGTCGTACCAAAACAGCTCGGCACTAACACAGACACAGTTAGAAGATACAGCACCAGAGACAGAGAAGAACACAGTTGTAGAAGGCGGAGAGGTACGGTTCAATGGGAAAGGGAAAAAGATTCGCAAACCAAGGACTATCTATTCCAGTTTGCAGCTACAGACTCTAAACAGAAGATTTCAACAAACTCAATATTTGGCACTGCCAGAGAGAGCCGAGCTGGCAGCTTCAATGGGACTCACGCAAACACAGGTAAAGATTTGGTTTCAAAATAAGCGATCGAAGTTCAAGAAACTGATGAAGCAAGGTGGTGGAACAATTGACAACAACACTTTAGCCCAGTTTAATGGTCGCATATCTTCGACTGGCTCTCCGGTAGCACCGGTTTGGAGCTCACCGACCACGGTGAAAACATCCGTGGGTACACCAGGGTCTTACATTCCAAGTTACACCTCATGGTATCCAACTGCACACCAAGAGTCTATGCAGCAACCGCAACTAATGTGAACATAACAGTGAGATAAAAGACCTGCCCCGCCCTCTATACTATCATGGCCCATATCAGGAGATTTTGGGTCAACCACCCAGCGTGGCCTTGCACTGTCCCGCTGCAAACATGCACAGATGTAATCCGGAGTTTGCTCCCAAAGTTGCCAGCTGACATGTCGGCCTCCTCATGCCGACCGACGGGACAGAGAACAAGAGCCCTGTGAGCCGAGGGACTGAAAAGGCACCGTTCGCGCCCGAGGGCAACAAGTCCTTTCATGTCACCGACAGACACCGGAAATTGTTATGAAAAATGGGTCCTCAAGCTGCTCTTATTATCTTTTGTGACATTTTAATAGGCTATGTGTTAAAGTAAATATATTGAGCTGTAACAAGTCAGTGAGAGTAGGCTATATTTATGTATCCTATGTTTGATTTTAAGATTTGCTTAATTTCTTATCCCAAttatgattttaaaaaatggcGTATGAAGCCGCACGTTTCCAAGTATCAGATGTAGGTCATGCATCTCCAACGAAGGTCAACATAGTGATTTGACCATGACCTTAAAACCTTGATTTCAAACAGACAAAACTACCACTGGTCTACAATGTAACTTTGACCAACGAATGTAGGCCAATCCAATTAATAGTCTTATCATTTTGATGGGCATGGAATCGAATATCGAGTCCATCCCTTAGTTCTTTCCTGCGCCATTGCGCTAGCcacatgttgctaccatgctgttttgTGTGTTAATTTAAGTTAAATTATTTAGTTTTTTCAAAGTCTGTGTGTTTATTTAATATGCAGGTGTGTTTGACTTATGAAACGACAACAAAGTGTTGTAAATGCTGCTCTAATGCAAGCAAAACTCCTCTTCTACGACGGGAGCCCCAAACATTATGTGAAAAAAGTTTAAATGGCTAGTGGCTGCTTGAGAAGAGCACTAAGTTGATCCCGAAGATGAAAATATGGTTTGTCATTGTTTGTTATGTGTTGCGCGGGTGGTTGTACATAAGGACAAGATATAATATGATTTTTTTCAGCTTTGGTTTGTGCTGTAGCCTAATGATACATTGTGAAATAGGGTTTTTGTGTGTTCATTAAGATGAATGTGTTAAGCAGTCTATAGAAATATTTAGTTTTGTATTGATCACTTTAATTTATTGCTTTGTTTTATTGAAGTTATGTACATATTGttgaaaacagtaaaaaaaagtaTGATTTAAAAGGACAGTATAACGGTGTCAGTAATATTGTGTTTATAGGCATGGTGCTGGCCTAGCCAGTGGGGTGGTGGTAACGATTAGAAAGTAAAGTGAAACCCTAAAACAAGTCCATGTAGGCTTGCGATGTGACAGCTATTTCTTCAGGACGTTATATTTAAAACGAAATCGGTGGTAAGATACAATGTAATAAAATAAAGCCTCTATGGTTACTCA

Function

symbol description
dlx1 Enables sequence-specific double-stranded DNA binding activity. Involved in cellular response to growth factor stimulus; negative regulation of cellular response to growth factor stimulus; and regulation of transcription by RNA polymerase II. Located in nucleus.

NR:

description
homeobox protein DLX-1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09314 DLX1_4_6; homeobox protein DLX1/4/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597160.2 False 2835 mRNA 0.42 5 49464651 49470746
XM_036974421.1 False 2827 mRNA 0.42 5 49464651 49470746
XM_036974423.1 True 2742 mRNA 0.42 5 49464651 49470746

Neighbor

gene id symbol gene type direction distance location
hat1 hat1 coding upstream 34569 49413492 ~ 49430082 (+)
dync1i2a LOC106586225 coding upstream 74056 49368762 ~ 49390595 (+)
LOC110520104 LOC106586222 coding upstream 96310 49365942 ~ 49368341 (+)
dcaf17 dcaf17 coding upstream 99833 49357526 ~ 49364818 (+)
LOC110520099 gors2 coding upstream 163875 49296162 ~ 49300776 (+)
itga6a LOC106586229 coding downstream 59232 49529978 ~ 49557537 (+)
pdk1 pdk1 coding downstream 89339 49560085 ~ 49563837 (+)
LOC110520113 LOC106586233 coding downstream 158500 49629246 ~ 49676777 (+)
zak LOC106586235 coding downstream 206183 49676929 ~ 49731937 (+)
cdca7a LOC106586236 coding downstream 261130 49731876 ~ 49735462 (+)
G267315 NA non-coding upstream 10701 49453728 ~ 49453950 (+)
G267309 NA non-coding upstream 15845 49448548 ~ 49448806 (+)
G267308 NA non-coding upstream 16865 49447525 ~ 49447786 (+)
G267259 NA non-coding upstream 78688 49333176 ~ 49385963 (+)
G267235 NA non-coding upstream 163096 49301268 ~ 49301555 (+)
G267347 NA non-coding downstream 24851 49495597 ~ 49495810 (+)
G267349 NA non-coding downstream 27181 49497927 ~ 49498326 (+)
G267351 NA non-coding downstream 30062 49500808 ~ 49501694 (+)
G267352 NA non-coding downstream 31750 49502496 ~ 49502698 (+)
G267353 NA non-coding downstream 31971 49502717 ~ 49503137 (+)
LOC110520046 LOC106586167 other upstream 2632407 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 3279847 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 3385226 46075484 ~ 46079425 (+)
G263710 NA other upstream 3530233 45934119 ~ 45934418 (+)
G263547 LOC106586150 other upstream 3625171 45838921 ~ 45839480 (+)
G267358 NA other downstream 40057 49510803 ~ 49512475 (+)
G267381 NA other downstream 83752 49554498 ~ 49555838 (+)
G267529 NA other downstream 365871 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 691555 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 1131556 50601983 ~ 50618761 (+)

Expression


Co-expression Network