dlx2a (dlx2)


Basic Information

Item Value
gene id dlx2a
gene name dlx2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49475978 ~ 49478117 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597161.2
AAATATACCAGCTCTGCCTCCCACGTGATACTGGATAAATGCCCGCCCGCTAGCATCCTAGGTAACAGACAATCACAGACCACTGTGATAGGGACACACCTTCGTCGTTTTTTGGTGAAGTTCATGGGGATGCCATTTTAAACTCAAAACGAATTTAATCCACGAGATATAAGCATTCATTGCAAATTGACTTTTTCAATTGCATTGCTTCAGGCACATTTAGCTGTGCAACTTTACCTACAAGATGACTGGAGTTTTTGACAGTCTCAGTACAGATATGCATTCGAACCAGATTACCTCGAACAGTTACCACAGCTTGCATAAATCGCAGGAGTCCCCAACTCTACCAGTATCGACTGCAACGGACAGCAGCTTTTACAATAGCCAACAGCCTGGATACTGCGCAGGGTCTCCATATGGCCAACTCGGAACTTACCAGTACCACAACAGTGGTATGAGCAGCGTTCAGTACAATGCTAAATCATACGACCTTGGTTTCAACTCTTATGGCACCTACGGCTCCTACGGTTCCAGTTCTTCACCGACTCCAACGGATGCAGAGAAAGAAGAAAGTGAACCTGAAATCCGAATGGTTAACGGGAAACCAAAGAAGGTCAGGAAACCTCGAACTATTTATTCAAGCTTCCAACTGGCCGCCCTTCAACGGAGATTCCAAAAGACACAGTACTTGGCTTTACCTGAGCGAGCCGAGCTGGCAGCCTCAATGGGCCTTACACAAACCCAGGTGAAAATTTGGTTCCAGAACCGACGCTCCAAGTTCaagaagttgtggaaaaatggagAAATCCCCCATGAGCAACATGTGACCTCCAGCGAGTCTCCCCCCTGTAACTCTCCACCCGCCACTGCCTGGGACTTTCCACAGAATCAAAGAATGAACAATGTAAACTCTAGTTTATCTCAGAGCAGCAGCCCTCCAAATACGACTGAGCCTTCTTTCTTGGCAAACTATTCTTGGTACTCATCAACGAACTCTGCAACACATCTTCAGGCTGGCCCGCTTGTCCAGCACCACCACAACTCCGCCTTGAGCGCTGGGACAATATTTTAATACAACTGACTCTTACTCGGAGAATACTGGTGAAACAGACAAAATGTCATTATACATTTTTACAGACCTCACCAAGCGAACTTTACGCGCAAGTTTGGCCTATAGCTGCTAGGGTAATTCAGAATGACACCGTGCTCGCACCGGCAAAATGGCAGACTACATATTTTTacagttatttttgtatttatttattgtgtttATTTTAATGGATGAGATTTATGAACCACTAATAGCCAAAACAACCACGTAGTAAGATGCTTTTACGAACGTGTGTTACTTTTGAATCAGCGCGAGTCCAAAGTTGATTGCAGGACGTGAACAACTGACACATATGTAGCACAATTTTCAACTGCGTCGTGCATTTTGAAAATTTCCTAATTTTGTTGTACGAGATCCATGTATTAGCCTACATGTACACAGATTTCTATATGGCCTATTCTTTACGGTTGGTTTCCTTTTGTAGGTCAGAATTCGGCTTTGAGAAATATTTCACAACATTATTTTGACATGCCATCCtggcatcatttttttttttattttaatattggGGACCAATGCTGTACCTATTCTTTACGGTTGTTTTATCCTTCATAAACTACTGATTGTCCCCTATTCCAATTAACTTGTATAACATTTCTATGGTGTATTGTCTTTAATTTATTTTATGGTTAGCAGTGTTTTCTTTATATGATCAGACGTTATTTAAATAAAATTATGTTTTCTGTT

Function

symbol description
dlx2 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in cell differentiation; negative regulation of transcription by RNA polymerase II; and regulation of neuron differentiation. Predicted to act upstream of or within several processes, including negative regulation of Notch signaling pathway; nervous system development; and skeletal system development. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
homeobox protein DLX-2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K18488 DLX2; homeobox protein DLX2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597161.2 True 1798 mRNA 0.42 3 49475978 49478117

Neighbor

gene id symbol gene type direction distance location
LOC110520101 LOC106586223 coding downstream 62865 49390493 ~ 49413113 (-)
LOC110520100 LOC106586220 coding downstream 118530 49303033 ~ 49357448 (-)
ccdc173 ccdc173 coding downstream 400808 49055465 ~ 49075170 (-)
LOC110520089 NA coding downstream 424910 49047704 ~ 49051068 (-)
LOC118958916 NA coding downstream 428365 49046323 ~ 49047613 (-)
LOC118944672 NA coding upstream 15884 49494001 ~ 49503025 (-)
LOC110520112 LOC106586230 coding upstream 85724 49563841 ~ 49608114 (-)
sp3a LOC106586237 coding upstream 316540 49794657 ~ 49802027 (-)
LOC110520118 LOC106586238 coding upstream 336654 49814771 ~ 49862076 (-)
LOC110520119 NA coding upstream 389070 49867187 ~ 49871681 (-)
G268299 NA non-coding downstream 279 49475335 ~ 49475699 (-)
G268293 NA non-coding downstream 9782 49465888 ~ 49466196 (-)
G268286 NA non-coding downstream 16171 49459599 ~ 49459807 (-)
G268284 NA non-coding downstream 18022 49457465 ~ 49457956 (-)
G268227 NA non-coding downstream 70774 49350822 ~ 49405204 (-)
G268312 NA non-coding upstream 19763 49497880 ~ 49498326 (-)
G268313 NA non-coding upstream 22118 49500235 ~ 49500444 (-)
G268317 NA non-coding upstream 25910 49504027 ~ 49504226 (-)
G268320 NA non-coding upstream 32831 49510948 ~ 49511446 (-)
G268328 NA non-coding upstream 47305 49525422 ~ 49525705 (-)
LOC110505248 gcg other downstream 1442676 48032036 ~ 48033434 (-)
G265988 NA other downstream 1876163 47599218 ~ 47599815 (-)
G263274 NA other downstream 3938436 45536332 ~ 45537542 (-)
LOC110520012 cssa21h2orf88 other downstream 4371715 45099333 ~ 45104286 (-)
G262993 NA other downstream 4463729 45010172 ~ 45012249 (-)
G268310 NA other upstream 17360 49495477 ~ 49495803 (-)
LOC110520121 LOC106581751 other upstream 422056 49895327 ~ 49901575 (-)

Expression


Co-expression Network