LOC118944672



Basic Information


Item Value
gene id LOC118944672
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49494001 ~ 49503025 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036964921.1
gTTAGCACTCCAAAGGGGAGTCAGGTTTTTTTTTGTGGCTTTGTTTGGTTAGGACAGTTTCTCAGGAAAATGAGTATGGAGGGAGCCATACAGGCCCTGTTACAAGCGGTGGCCGCCCAACAAGAGGCAACTAGAGCTCAACAAATAGCTCATCAGGATGCAATGCGAATGTATCAGGACACGTTACAGGTCCAGCACTGCACCAACCAGCTGCTCAgagaagagcaagagagaaacacCCGGGAGTTAAGAGAAGGCCTAAAGGGGCTAGCGGACCAAATTGGGGCTCAATTACCAGCTGCAAATACCCAGAAGCGGGCCAATCATTTTCTTCAAAAAATGACAGCACAGGATGATGTGGAAGCATATCTTACCACCTTCGAAAGGacggcagagagggagaagtggccGAAAGAAGAATGGGCAGGGCTTCTGGCACCATACCTGGCAGGGGATGCTCAAAAAGCATATTTCGACCTGGAGTTGAAAGATGCACAGGATTACGATAAACTAAAGGGAGAGATCTTGACTAGACTGGGAGTGACCGATACCGTGAGGGCACACCGCTTCCACCAGTGGTCCTACCGACCGGGACAACCCCCACGAACACAGATGTTCGACTTGATTCACCTGGCACGGAAATGGTTGCGACCAGAGACCCGGTCATCCGCAGAGATCGTCGAGACCATCGTACTCAACCAGTTTCAGCGAGGTCTACCCCAAGAAGTGAGACGATGGGTTGGCCAGAACGAGGTACTTTCCTCCGACCATCTCGTGGGCCTGGTTGAACGGTATTGTACGGCAGGAACAGCTGAGCAGGCACAGAAGGAAAGATTCCCGTTCCCCAGGCCTGGGCGAACCAGCGGACAGGcttCATCTCATGTGACAGAATGCAGCAGCCAACATACATTGGGGAGTACTGGCGTTACGGTTGGTACGGTGGCATCGGATCTGGGTCGCCACCAATGGAACCGGGGGTACCTAGCCAGCTCGTCCGGCTTCCACgccctagctggctcgagaggtttccttgccccgGTTGGCTCGGATGGCGCCCACGTCGTGCCTCGGCCGGATCGTCAGTTCTTGTTCGCCAAgcgtcttggtgtgcttggaccaagttag
>TU304858
CAGTTTCTCAGGAAAATGAGTATGGAGGGAGCCATACAGGCCCTGTTACAAGCGGTGGCCGCCCAACAAGAGGCAACTAGAGCTCAACAAATAGCTCATCAGGATGCAATGCGAATGTATCAGGACACGTTACAGGTCCAGCACTGCACCAACCAGCTGCTCAgagaagagcaagagagaaacacCCGGGAGTTAAGAGAAGGCCTAAAGGGGCTAGCGGACCAAATTGGGGCTCAATTACCAGCTGCAAATACCCAGAAGCGGGCCAATCATTTTCTTCAAAAAATGACAGCACAGGATGATGTGGAAGCATATCTTACCACCTTCGAAAGGacggcagagagggagaagtggccGAAAGAAGAATGGGCAGGGCTTCTGGCACCATACCTGGCAGGGGATGCTCAAAAAGCATATTTCGACCTGGAGTTGAAAGATGCACAGGATTACGATAAACTAAAGGGAGAGATCTTGACTAGACTGGGAGTGACCGATACCGTGAGGGCACACCGCTTCCACCAGTGGTCCTACCGACCGGGACAACCCCCACGAACAC

Function


NR:

description
uncharacterized protein LOC111193257

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036964921.1 False 1125 mRNA 0.54 2 49494001 49503025
TU304858 True 556 TUCP 0.51 1 49502416 49502971
Loading

Neighbor


gene id symbol gene type direction distance location
dlx2a dlx2 coding downstream 15884 49475978 ~ 49478117 (-)
LOC110520101 LOC106586223 coding downstream 80888 49390493 ~ 49413113 (-)
LOC110520100 LOC106586220 coding downstream 136553 49303033 ~ 49357448 (-)
ccdc173 ccdc173 coding downstream 418831 49055465 ~ 49075170 (-)
LOC110520089 NA coding downstream 442933 49047704 ~ 49051068 (-)
LOC110520112 LOC106586230 coding upstream 60816 49563841 ~ 49608114 (-)
sp3a LOC106586237 coding upstream 291632 49794657 ~ 49802027 (-)
LOC110520118 LOC106586238 coding upstream 311746 49814771 ~ 49862076 (-)
LOC110520119 NA coding upstream 364162 49867187 ~ 49871681 (-)
LOC110520120 LOC106586242 coding upstream 376085 49879110 ~ 49895110 (-)
G268299 NA non-coding downstream 18302 49475335 ~ 49475699 (-)
G268293 NA non-coding downstream 27805 49465888 ~ 49466196 (-)
G268286 NA non-coding downstream 34194 49459599 ~ 49459807 (-)
G268284 NA non-coding downstream 36045 49457465 ~ 49457956 (-)
G268160 NA non-coding downstream 134830 49358057 ~ 49359171 (-)
G268317 NA non-coding upstream 1002 49504027 ~ 49504226 (-)
G268320 NA non-coding upstream 7923 49510948 ~ 49511446 (-)
G268328 NA non-coding upstream 22397 49525422 ~ 49525705 (-)
G268329 NA non-coding upstream 22925 49525950 ~ 49526176 (-)
G268330 NA non-coding upstream 24908 49527933 ~ 49528246 (-)
LOC110505248 gcg other downstream 1460699 48032036 ~ 48033434 (-)
G265988 NA other downstream 1894186 47599218 ~ 47599815 (-)
G263274 NA other downstream 3956459 45536332 ~ 45537542 (-)
LOC110520012 cssa21h2orf88 other downstream 4389738 45099333 ~ 45104286 (-)
G262993 NA other downstream 4481752 45010172 ~ 45012249 (-)
LOC110520121 LOC106581751 other upstream 397148 49895327 ~ 49901575 (-)
LOC110520139 LOC106586251 other upstream 937180 50440201 ~ 50442930 (-)
LOC110520160 LOC106586095 other upstream 1625415 51126600 ~ 51130404 (-)
G268313 NA non-coding downstream 1972 49500235 ~ 49500444 (-)
G268312 NA non-coding downstream 4090 49497880 ~ 49498326 (-)
G268310 NA other downstream 6613 49495477 ~ 49495803 (-)

Expression


LOC118944672 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC118944672 Expression in each Bioproject

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LOC118944672 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network