pdk1 (pdk1)


Basic Information

Item Value
gene id pdk1
gene name pdk1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49560085 ~ 49563837 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597164.2
CGTTTTTCCCTGTCTCATGGACCAAACTCTAGTACAGTAGGAGGCGGTAATAcaccataacgttggatgccaaccACCGACAAAAACCCCACCGAAGAAGAAGATGAAGCTCGTTCGTGTTTGTTTTGATTGCTAGCATGCTGCTGGAAGTTAGCTAGCACAACAGAACCAATGCATGATTCTTGAAGCGATATATGGGTTGTTCAATGTAGAAAGTAACGTTATAATACGCTAAACGAATACgtataaatacatgttttaagaTAATGTAAATAGCTCACTTTCTAGGAACTTTTGCGAACAGTTCCAGTCGACTTGAATGAATGACATGCTGGagtactaacgttagctagctaaataagcTGGCTATCTCCACTGAGCTTTTGTCATTTATTGTAAACTGTAACTGTTACCTAGCCTAATTGTTTACTTGTGGACCGTGATGGCTGCAAACGAACTTCACaaaagctaactagctagctgttaAAAGCTAGCTTAGCTACATATCTCGCTGCGTTCATCAGATGTCAACAATGCCATGGGCAATCGGCTGTTCAACACCGTCAACTGAATAATTTATATCCACGCCCATTTATCAACTGCGCTAAATCGATCAAAATGAGGATTCTACGGGCCTTGATGAGTAACGCCGCTTCAATGGGAAAGCATATTGATTACTACTCCAggttctccccttctcccctctcaaTGAAACAGTTCTTGGACTTCGGGTCTGGTGAAAATGCATGCGAGAAAACATCGTTTGCATTCCTCAGACAGGAGCTACCTGTGAGGTTGGCAAACATAATGAAGGAGATCAACTTGTTACCTGATAATCTGCTAAAGACTCCATCAGTCCGGTTGGTACAGAGTTGGTACATGCAAAGTCTTCAAGACATTATTGAGTTCAAGGAGAAAGATGCCGATGATGAGAAAGTAACATATGAtttCACTGATGCTGTTATAAAGATCCGAAACCGTCACAATGACGTCATCCCGACAATGGCCCAGGGAGTTGTGGAGTACAAGGAGACCTATGGCACAGACCCCATCGTCAGCCAGAACGTTCAGTATTTCCTGGATCGCTTCTACATGAGCAGAATATCCATCAGGATGCTACTTAACCAGCACACCCTGCTCTTTGGTGGGAAGGTGAGGGTAAACCCAGCGCATCCTAAACAGATTGGCAGTATTGATCCGCACTGCAGTGTTACTGAAGTAGTTAGGGATGCGTATGAAAATGCAAGAAATCTTTGTGATCGGTATTACATGAACTCTCCTGAGTTGGTACTGGAACAATTCAATGTGAAAGATGGAAAGCCAGTGACTGTAGTGTATGTGCCATCCCATCTCTACCACATGGTATTTGAACTTTTCAAGAATGCCATGAGAGCCACCATGGAGTTGTATGGCGACTCTATGGACTATCCTCCTGTACATGCCCAGGTGGCCCTGGGGAGTGAAGACCTGACAGTCAAGGTGAGTGATCGCGGAGGTGGGGTCCCTCTGAGGAAGATTGAGAGGCTGTTCACCTACACCTACTCCACCGCCCCCCCGCCCAGCATGGACGGCCAACGCAGCCCTCTGGCTGGATATGGGTATGGCCTGCCCATCTCTCGATTATATGCCAGATACTTCCAAGGTGATTTGAAGCTGTACTCTCTGGAGGGCTATGGCACCGATGCTGTGATATATATCCGGGCATTGTCCACGGAGTCCATCGAGAGGCTTCCTGTTTACAACAAGTCAGTCTGGAAGCACTACAAGACCATGCACGAGGCAGACGACTGGTGTGTTCCAAGCAAGGAGCCCAAGGACATGACAACGTTCCGTAGTTTTTAGGCCTAGATGCCTCCTGGTTAGACTAGTGTCATTTGCTAGATGACTTACTGTACATGAATTGCTTTGTGTGAGTGACGCTATAGCTGTTCCACTGTGGGAAGCAATAGGTCAAAACCCTTTGCACCTTTACTGGTTGTATGGATACATAACTAGCGAAGTTCTAGTGCCATACGTTTGTGTTGCTTTTTCAAAACTGACATGTTTATTATGTGAAAGGATTGCTTGGTTTCTAGCATTTTGCTGAAAGGGGAAAAAGGGTGAATATTGCTTGTTATTTATACTGAGTGTTCTCCACTGGCTGAAGATGTTTGTTAAAGTTGTGCAGCTACGAGGTCTTTTTCCATGTCCTCCGCTATCGCTGAAGGAATGTTATTTTATCGACAGTATAGAAGTACATGTTTTCTTTGTCCTCCAGTGATACATGACAGAGAAATAAAAATATAGTACTTGTTCTAACTGATGTGTTATCTGTCAAGTGTTACTGACCTTAGTGGAACTTTCATCTCATGATTGCAGAACCATTAGACCTTCCAATAAAGCACAAAATACACCCACAAAA

Function

symbol description
pdk1 Predicted to enable pyruvate dehydrogenase (acetyl-transferring) kinase activity. Predicted to be involved in protein phosphorylation and regulation of glucose metabolic process. Predicted to act upstream of or within phosphorylation. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Orthologous to human PDK1 (pyruvate dehydrogenase kinase 1).

NR:

description
pyruvate dehydrogenase (acetyl-transferring) kinase isozyme 1, mitochondrial

GO: NA

KEGG:

id description
K12077 PDK1; pyruvate dehydrogenase kinase isoform 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597164.2 True 2401 mRNA 0.44 11 49560085 49563837

Neighbor

gene id symbol gene type direction distance location
itga6a LOC106586229 coding upstream 2548 49529978 ~ 49557537 (+)
dlx1a dlx1 coding upstream 89339 49464651 ~ 49470746 (+)
hat1 hat1 coding upstream 130003 49413492 ~ 49430082 (+)
dync1i2a LOC106586225 coding upstream 169490 49368762 ~ 49390595 (+)
LOC110520104 LOC106586222 coding upstream 191744 49365942 ~ 49368341 (+)
LOC110520113 LOC106586233 coding downstream 65409 49629246 ~ 49676777 (+)
zak LOC106586235 coding downstream 113092 49676929 ~ 49731937 (+)
cdca7a LOC106586236 coding downstream 168039 49731876 ~ 49735462 (+)
LOC118959582 NA coding downstream 193980 49757817 ~ 49767356 (+)
LOC110520117 LOC106586239 coding downstream 298402 49862239 ~ 49865998 (+)
G267380 NA non-coding upstream 5740 49553946 ~ 49554345 (+)
G267377 NA non-coding upstream 19751 49539848 ~ 49540334 (+)
G267375 NA non-coding upstream 20806 49538890 ~ 49539279 (+)
G267374 NA non-coding upstream 22138 49537493 ~ 49537947 (+)
G267385 NA non-coding downstream 51 49563888 ~ 49565192 (+)
G267416 NA non-coding downstream 47238 49611075 ~ 49611419 (+)
G267427 NA non-coding downstream 50747 49614584 ~ 49614845 (+)
G267471 NA non-coding downstream 180636 49744473 ~ 49747702 (+)
G267503 NA non-coding downstream 227918 49791755 ~ 49794631 (+)
G267381 NA other upstream 4247 49554498 ~ 49555838 (+)
G267358 NA other upstream 47610 49510803 ~ 49512475 (+)
LOC110520046 LOC106586167 other upstream 2727841 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 3375281 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 3480660 46075484 ~ 46079425 (+)
G267529 NA other downstream 272780 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 598464 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 1038465 50601983 ~ 50618761 (+)
G269291 rap2a other downstream 1334752 50898589 ~ 50900277 (+)
LOC110520169 il1rl1 other downstream 2010143 51573980 ~ 51582567 (+)

Expression


Co-expression Network