LOC110520118 (LOC106586238)


Basic Information

Item Value
gene id LOC110520118
gene name LOC106586238
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49814771 ~ 49862076 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974444.1
TTCATTTCAGTCAGACGCATGTCCTAGTTTAAGGATGAGGCGTTAGCCAGTGTGAGTGAGGTCGACTGAACTTGCTATTAGCTAGACCGCTATTAGCTTCTTTTACAGAGCTTACATTACCAGCAATATATGGGTTTTTTTCACTCTAAGTTGTGAGTAGATTTAGTAGGCAGTGAAAACTGAAGAAAAGGACATGGCTCCCAAGAAGCAGAAGGGAGGTGATGGACAGCAGCCACCACCACTGATTGGACGGTTTGGGACTTCTTTGAAAATAGGAATCGTCGGATTGCCCAATGTAGGGAAGTCAACCTTTTTCAACGTACTGACAAAGAGTCAAGCTGCAGCTGAGAATTTCCCCTTCTGCACCATTGACCCAAATGAAAGCAGAGTGCCCATTCCAGATGAACGCTACGATTTCCTGTGCCAATTCCACAAGCCTGTCAGCAAGGTGCCGGCCTTCCTGAACGTGGTAGACATAGCAGGACTGGTGAAGGGAGCTCACGCTGGCCAGGGTCTGGGCAACGCCTTCCTGTCCCACATCAGTGCCTGCGATGGCATCTTCCACATGACACGTGCGTTTGAGGATGAGGACATTGTCCACGTGGAGGGGAACGTGGACCCAGTGAGGGACATTGAGATCATCCATGAGGAGCTGAGGCTGAAGGATGAGGAGATGATCGGGCCCATTATGGAGAAGCTGGAGAAGGTGGCCGTGAGAGGAAGCGACAAGAAACTCAAACCTGAATACGACGTAATGCTCAAAATCAAGAACTGGGTCGCGGATGAAAAGAAACATGTCCGCTACTGTCGCGACTGGACTGAGAAGGAGatcGAAGTGTTGAACAAATACTTGTTTTTGACATCCAAGCCAATGATTTACCTCATTAACCTCTCAGAGAAAGACTACATCAGAAGAAAGAACAAATGGTTGGTGAAAATCAAGGAGTGGGTGGACAGTCACGACCCCGGGGCGCTGGTCATCCCCTtcagtggaggagtggagagtcTCCTGCAGGACATGAGTGAAGAGGAGATTCAGAAGTACTGCACCGAGCACAAGGCTCAGAGCGTTCTGACAAGGATCATCAAGGCTGGCTATGGAGCCCTACAGTTGGAGTACTTCTTCACAGCTGGACCAGACGAGGTCCGTGCGTGGACCATCCGGAAAGGAACCAAGGCTCCACAGGCAGCCGGCAAGATCCACACGGACTTTGAGAAGGGCTTCATTATGGCTGAAGTAATGAAATTTGAGGATTTTAAAGAGGGAGGCAGTGAAAACGCTGTCAAGGCAGCGGGGAAATACAGACAACAGGGGAAAACCTACATTGTGGAGGACGGAGACGTCATCTTTTTCAAATTCAACACGCCGAACCAGCCCAAGACTAAGAAGTGACTCCGTCACAGTCTGTTGGCTACCAGAATGGACTGTGCTGTTAGATAATTTGCCTTCTTTGTTTTAGACAGAATGAAGCTGGAGATTGTGATTGATACCTGCCAGGTCGGCTCAGTCCTACCTACTGCCCACTCTGCCACATTATCCCTGTTTGTTTTTGGTTCAGGACAATTCCAGACAGTCCCCCTTGCCAAAGAACAGGTCCACTAAACGTTGACAGCTTTTGGTAGGAGCATTTGAAGAAGCGTATTACTCTCTTGATACTTCATTAATCTCCATCACTGGTGCCAGGCCTGACACAGCTGACAGCAGGGACAATGcgacctgctcctctcctccttccagagATAATGCATGTTTTACAGTAGCCCAGATGTCTATACTCAATAAAACATTTGACAAAacca
>XM_036974445.1
TCTTTCATTTCAGTCAGACGCATGTCCTAGTTTAAGGATGAGGCGTTAGCCAGTGTGAGTGAGGTCGACTGAACTTGCTATTAGCTAGACCGCTATTAGCTTCTTTTACAGAGCTTACATTACCAGCAATATATGGGTTTTTTTCACTCTAAGTTGTGAGTAGATTTAGTAGGCAGTGAAAACTGAAGAAAAGGACATGGCTCCCAAGAAGAAGGGAGGTGATGGACAGCAGCCACCACCACTGATTGGACGGTTTGGGACTTCTTTGAAAATAGGAATCGTCGGATTGCCCAATGTAGGGAAGTCAACCTTTTTCAACGTACTGACAAAGAGTCAAGCTGCAGCTGAGAATTTCCCCTTCTGCACCATTGACCCAAATGAAAGCAGAGTGCCCATTCCAGATGAACGCTACGATTTCCTGTGCCAATTCCACAAGCCTGTCAGCAAGGTGCCGGCCTTCCTGAACGTGGTAGACATAGCAGGACTGGTGAAGGGAGCTCACGCTGGCCAGGGTCTGGGCAACGCCTTCCTGTCCCACATCAGTGCCTGCGATGGCATCTTCCACATGACACGTGCGTTTGAGGATGAGGACATTGTCCACGTGGAGGGGAACGTGGACCCAGTGAGGGACATTGAGATCATCCATGAGGAGCTGAGGCTGAAGGATGAGGAGATGATCGGGCCCATTATGGAGAAGCTGGAGAAGGTGGCCGTGAGAGGAAGCGACAAGAAACTCAAACCTGAATACGACGTAATGCTCAAAATCAAGAACTGGGTCGCGGATGAAAAGAAACATGTCCGCTACTGTCGCGACTGGACTGAGAAGGAGatcGAAGTGTTGAACAAATACTTGTTTTTGACATCCAAGCCAATGATTTACCTCATTAACCTCTCAGAGAAAGACTACATCAGAAGAAAGAACAAATGGTTGGTGAAAATCAAGGAGTGGGTGGACAGTCACGACCCCGGGGCGCTGGTCATCCCCTtcagtggaggagtggagagtcTCCTGCAGGACATGAGTGAAGAGGAGATTCAGAAGTACTGCACCGAGCACAAGGCTCAGAGCGTTCTGACAAGGATCATCAAGGCTGGCTATGGAGCCCTACAGTTGGAGTACTTCTTCACAGCTGGACCAGACGAGGTCCGTGCGTGGACCATCCGGAAAGGAACCAAGGCTCCACAGGCAGCCGGCAAGATCCACACGGACTTTGAGAAGGGCTTCATTATGGCTGAAGTAATGAAATTTGAGGATTTTAAAGAGGGAGGCAGTGAAAACGCTGTCAAGGCAGCGGGGAAATACAGACAACAGGGGAAAACCTACATTGTGGAGGACGGAGACGTCATCTTTTTCAAATTCAACACGCCGAACCAGCCCAAGACTAAGAAGTGACTCCGTCACAGTCTGTTGGCTACCAGAATGGACTGTGCTGTTAGATAATTTGCCTTCTTTGTTTTAGACAGAATGAAGCTGGAGATTGTGATTGATACCTGCCAGGTCGGCTCAGTCCTACCTACTGCCCACTCTGCCACATTATCCCTGTTTGTTTTTGGTTCAGGACAATTCCAGACAGTCCCCCTTGCCAAAGAACAGGTCCACTAAACGTTGACAGCTTTTGGTAGGAGCATTTGAAGAAGCGTATTACTCTCTTGATACTTCATTAATCTCCATCACTGGTGCCAGGCCTGACACAGCTGACAGCAGGGACAATGcgacctgctcctctcctccttccagagATAATGCATGTTTTACAGTAGCCCAGATGTCTATACTCAATAAAACATTTGACAAAacca
>XM_036974446.1
AGCAAGGTACGATTTGGTATTTTTATACATGTTATGTATTCTCCCATCAAGGCTCAATGTGCTCTTTATTGTAGAATCGAGATCATTTTGGTTTAAGCTAGTTCTCTGCAAGAGGAATGGAAACGTCTTCATAGGCGCAGGGCATGTGCTTGCTTACACCATCCATGAAGTTAAGCAGAAGTTCCCATGCACTCACCAGGGGGCCAGAAGTGCAATAAACGGACCCATTATCAATAAACAATGGCTGACTAAAGTGAAGACGCTTACAATACAAGGAAGTCAACCTTTTTCAACGTACTGACAAAGAGTCAAGCTGCAGCTGAGAATTTCCCCTTCTGCACCATTGACCCAAATGAAAGCAGAGTGCCCATTCCAGATGAACGCTACGATTTCCTGTGCCAATTCCACAAGCCTGTCAGCAAGGTGCCGGCCTTCCTGAACGTGGTAGACATAGCAGGACTGGTGAAGGGAGCTCACGCTGGCCAGGGTCTGGGCAACGCCTTCCTGTCCCACATCAGTGCCTGCGATGGCATCTTCCACATGACACGTGCGTTTGAGGATGAGGACATTGTCCACGTGGAGGGGAACGTGGACCCAGTGAGGGACATTGAGATCATCCATGAGGAGCTGAGGCTGAAGGATGAGGAGATGATCGGGCCCATTATGGAGAAGCTGGAGAAGGTGGCCGTGAGAGGAAGCGACAAGAAACTCAAACCTGAATACGACGTAATGCTCAAAATCAAGAACTGGGTCGCGGATGAAAAGAAACATGTCCGCTACTGTCGCGACTGGACTGAGAAGGAGatcGAAGTGTTGAACAAATACTTGTTTTTGACATCCAAGCCAATGATTTACCTCATTAACCTCTCAGAGAAAGACTACATCAGAAGAAAGAACAAATGGTTGGTGAAAATCAAGGAGTGGGTGGACAGTCACGACCCCGGGGCGCTGGTCATCCCCTtcagtggaggagtggagagtcTCCTGCAGGACATGAGTGAAGAGGAGATTCAGAAGTACTGCACCGAGCACAAGGCTCAGAGCGTTCTGACAAGGATCATCAAGGCTGGCTATGGAGCCCTACAGTTGGAGTACTTCTTCACAGCTGGACCAGACGAGGTCCGTGCGTGGACCATCCGGAAAGGAACCAAGGCTCCACAGGCAGCCGGCAAGATCCACACGGACTTTGAGAAGGGCTTCATTATGGCTGAAGTAATGAAATTTGAGGATTTTAAAGAGGGAGGCAGTGAAAACGCTGTCAAGGCAGCGGGGAAATACAGACAACAGGGGAAAACCTACATTGTGGAGGACGGAGACGTCATCTTTTTCAAATTCAACACGCCGAACCAGCCCAAGACTAAGAAGTGACTCCGTCACAGTCTGTTGGCTACCAGAATGGACTGTGCTGTTAGATAATTTGCCTTCTTTGTTTTAGACAGAATGAAGCTGGAGATTGTGATTGATACCTGCCAGGTCGGCTCAGTCCTACCTACTGCCCACTCTGCCACATTATCCCTGTTTGTTTTTGGTTCAGGACAATTCCAGACAGTCCCCCTTGCCAAAGAACAGGTCCACTAAACGTTGACAGCTTTTGGTAGGAGCATTTGAAGAAGCGTATTACTCTCTTGATACTTCATTAATCTCCATCACTGGTGCCAGGCCTGACACAGCTGACAGCAGGGACAATGcgacctgctcctctcctccttccagagATAATGCATGTTTTACAGTAGCCCAGATGTCTATACTCAATAAAACATTTGACAAAacca

Function

NR:

description
obg-like ATPase 1

GO: NA

KEGG:

id description
K19788 OLA1; obg-like ATPase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974444.1 False 1800 mRNA 0.49 11 49814771 49858346
XM_036974445.1 False 1800 mRNA 0.49 11 49814771 49858349
XM_036974446.1 True 1775 mRNA 0.48 11 49814771 49862076

Neighbor

gene id symbol gene type direction distance location
sp3a LOC106586237 coding downstream 12744 49794657 ~ 49802027 (-)
LOC110520112 LOC106586230 coding downstream 206657 49563841 ~ 49608114 (-)
LOC118944672 NA coding downstream 311746 49494001 ~ 49503025 (-)
dlx2a dlx2 coding downstream 336654 49475978 ~ 49478117 (-)
LOC110520101 LOC106586223 coding downstream 401658 49390493 ~ 49413113 (-)
LOC110520119 NA coding upstream 5111 49867187 ~ 49871681 (-)
LOC110520120 LOC106586242 coding upstream 17034 49879110 ~ 49895110 (-)
LOC110520121 LOC106581751 coding upstream 33251 49895327 ~ 49901575 (-)
LOC110520122 LOC106586243 coding upstream 43357 49905433 ~ 49920328 (-)
atf2 atf2 coding upstream 100391 49962467 ~ 49978892 (-)
G268502 NA non-coding downstream 8101 49806408 ~ 49806670 (-)
G268501 NA non-coding downstream 9592 49804977 ~ 49805179 (-)
G268467 NA non-coding downstream 20154 49791748 ~ 49794617 (-)
G268462 NA non-coding downstream 76321 49738222 ~ 49738450 (-)
G268457 NA non-coding downstream 83424 49730949 ~ 49731347 (-)
G268470 NA non-coding upstream 60921 49922997 ~ 49930662 (-)
G268548 NA non-coding upstream 78800 49940876 ~ 49945765 (-)
G268560 NA non-coding upstream 98839 49960915 ~ 49961213 (-)
G268673 NA non-coding upstream 183850 50045926 ~ 50046290 (-)
G268310 NA other downstream 318968 49495477 ~ 49495803 (-)
LOC110505248 gcg other downstream 1781469 48032036 ~ 48033434 (-)
G265988 NA other downstream 2214956 47599218 ~ 47599815 (-)
LOC110520139 LOC106586251 other upstream 578129 50440201 ~ 50442930 (-)
LOC110520160 LOC106586095 other upstream 1266364 51126600 ~ 51130404 (-)
fgf9 NA other upstream 1611248 51471899 ~ 51478510 (-)

Expression


Co-expression Network