LOC110520119


Basic Information

Item Value
gene id LOC110520119
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49867187 ~ 49871681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005048133.1
GGCTAAATAGTTGTTCTAGTCCAGCCCTCCTCACTAGTAAGTAATCTATAGTAGctagtttagctagctaacagttggTTGCAGATGTTCCAGATACATTTTATCTCCATTGTTCCATTTGTGCCTTTACATAGGACTTTTTATTTCGTCTCTCATTATTTCCCCACTGAAAGATATTGTAGCGAACGGAGGCAAACTCTGGTCGCAGGAGTAAAAGGCAAACACCCAACGCATCGCGCCATTTAAACTGGGTTAACCCACTTGTTGGGTATAATAAtgtatattataaactggttggtttgagccctgaatgctgattggGCTGTTGGTGGGAGATGATCTGTGAAGAATGGTCTCAACTTCATGTATGAAGCTCCACCTGGGGCAGACCAAGGAAGGAGAATCAGAATACAAGTTTGAGTGGCAAAAGACGTCCCCTGGAGGGAAGTCCGTCGATGCACCCCTCCGAGTTAATGGCAGAGATGCGAAACAGTGGGTTTGCCCTGAAGAAATGTGTCCTTGGAAGAAATTCTACTGTTTGTGATCCATCGCAGGAGTACGTTGtcaatgaagaagaggaggatcctGAGGTTGAATTCCTGAAGTCGTTGACCACTAAACAGAAAGAGAAGCTCCTCAGgaaacttgaTCGTCTACAAAAGAAGAGTGAAGGAAATCAGAAGAAGGACCGTGATAGTAGTGACAGCTCCAGTGAAAGTAGTAGCAGTGACTGACTGACAGCTCCAGTGAAAGTAGCAGCAGTGACTGACTGACAGCTCCAGTGAAAGTAGCAGCAGTGACTGACTGACAGCTCCAGTGAAAGTAGCAGCAGTGACTGACTGACAGCTCCAGTGAAAGTAGCAGctgtgactgactgacagctCCAGTGAAAGTAGCAGCAGTGACTGACTGACAGCTTCAGTGAAAGTAGCAGCAGTGACTAAGAGTCAGAAGAGAAAGAAGAAAGGCAAGAGAAAGGACTCCTGTCGTGATGACAACACTGAGAGTGATGGATGAGTCTAGAGTAAGACCAGGCCCAACCTCCAGACAGAAACATCACAAAGATGAtaccagagaggagaaagaaacagTAGAGATGAGACACGACAGCAGGGAAAGGCAGAGAACCAGCAGCAGCTCCCAGCCTGacccagacagaagcagaaggagaGGGATATAAAGACAAGGTTcctagatggagggagggagagaggggggaggcagagggaggagcaggagcagagggagggagaatgagaaaaGAGCCAGAGGGAGAGCTGAGAGAAAGCACTGAACTGTGAGAGTGGACAATCTTACAAAGTGGGCCAGTGATACCATTTTATTTTACTGATGTAAACATTTTTGACACGTTTTGACGATTTTATGATGCTATTGTTAATATGTACATTTTTCTTGGTGGGCCCACTTATTaaacaaacacatagaaaccaagTTTTAGTAACACCATGTTTTGGTGTTGCATGCTAGTTGGCTGCTACGGTCAAATGAgtgcaggggtgtattcattatgcCGATTATGTTGCAAAATGTTGAGCAGAAGCAAACTGAATGAAACCGGGAGGGGCCTACCTGAATTTGACCAATAGAAACTGTTCAAAATGTTCCATTTTGCTACTGTTAGGACTAGTGATTACACCCCTGCTCCTCAAATAGTTATTATTTTCATCCACTAGAGGGCAGCAGTAGACCTAAAATAACTTGAACCACAGAAATATTTTTCATTTGTCAGATTATTGAACAAATGCATGTCTTGCATGCACTTTTATTGATGGTTGTCACTTTAGTCCAGAAAACCCTCTTCAGAATTctaataaaaaatattatttgcaACTCGAATTTTAAAAATAGTGAACTGTG
>XR_002472943.2
TCAGAGGTCACGCACATAGCTGATCCGGAAGAAGATTTTAACCacgttgttttgtttttgtcagCGCGAGCTAGCTAACATTTCGCTTTTAATCCCCTAACTAATTGTTCTTCAGCCATTGGGAAGTAATTTGCTAATTGCTGTTGGTGGGAGATGATCTGTGAAGAATGGTCTCAACTTCATGTATGAAGCTCCACCTGGGGCAGACCAAGGAAGGAGAATCAGAATACAAGTTTGAGTGGCAAAAGACGTCCCCTGGAGGGAAGTCCGTCGATGCACCCCTCCGAGTTAATGGCAGAGATGCGAAACAGTGGGTTTGCCCTGAAGAAATGTGTCCTTGGAAGAAATTCTACTGTTTGTGATCCATCGCAGGAGTACGTTGtcaatgaagaagaggaggatcctGAGGTTGAATTCCTGAAGTCGTTGACCACTAAACAGAAAGAGAAGCTCCTCAGgaaacttgaTCGTCTACAAAAGAAGAGTGAAGGAAATCAGAAGAAGGACCGTGATAGTAGTGACAGCTCCAGTGAAAGTAGTAGCAGTGACTGACTGACAGCTCCAGTGAAAGTAGCAGCAGTGACTGACTGACAGCTCCAGTGAAAGTAGCAGCAGTGACTGACTGACAGCTCCAGTGAAAGTAGCAGCAGTGACTGACTGACAGCTCCAGTGAAAGTAGCAGctgtgactgactgacagctCCAGTGAAAGTAGCAGCAGTGACTGACTGACAGCTTCAGTGAAAGTAGCAGCAGTGACTAAGAGTCAGAAGAGAAAGAAGAAAGGCAAGAGAAAGGACTCCTGTCGTGATGACAACACTGAGAGTGATGGATGAGTCTAGAGTAAGACCAGGCCCAACCTCCAGACAGAAACATCACAAAGATGAtaccagagaggagaaagaaacagTAGAGATGAGACACGACAGCAGGGAAAGGCAGAGAACCAGCAGCAGCTCCCAGCCTGacccagacagaagcagaaggagaGGGATATAAAGACAAGGTTcctagatggagggagggagagaggggggaggcagagggaggagcaggagcagagggagggagaatgagaaaaGAGCCAGAGGGAGAGCTGAGAGAAAGCACTGAACTGTGAGAGTGGACAATCTTACAAAGTGGGCCAGTGATACCATTTTATTTTACTGATGTAAACATTTTTGACACGTTTTGACGATTTTATGATGCTATTGTTAATATGTACATTTTTCTTGGTGGGCCCACTTATTaaacaaacacatagaaaccaagTTTTAGTAACACCATGTTTTGGTGTTGCATGCTAGTTGGCTGCTACGGTCAAATGAgtgcaggggtgtattcattatgcCGATTATGTTGCAAAATGTTGAGCAGAAGCAAACTGAATGAAACCGGGAGGGGCCTACCTGAATTTGACCAATAGAAACTGTTCAAAATGTTCCATTTTGCTACTGTTAGGACTAGTGATTACACCCCTGCTCCTCAAATAGTTATTATTTTCATCCACTAGAGGGCAGCAGTAGACCTAAAATAACTTGAACCACAGAAATATTTTTCATTTGTCAGATTATTGAACAAATGCATGTCTTGCATGCACTTTTATTGATGGTTGTCACTTTAGTCCAGAAAACCCTCTTCAGAATTctaataaaaaatattatttgcaACTCGAATTTTAAAAATAGTGAACTGTG
>XR_002472942.2
AGTACGTCAGAGGTCACGCACATAGCTGATCCGGAAGAAGATTTTAACCacgttgttttgtttttgtcagCGCGAGCTAGCTAACATTTCGCTTTTAATCCCCTAACTAATTGTTCTTCAGCCATTGGGAAGTAATTTGCTAATTGTAAGTGCAATAAAGTTTTTCCATCCTGCATCGAAGTCAAATATATAAAAAGGCTGTTGGTGGGAGATGATCTGTGAAGAATGGTCTCAACTTCATGTATGAAGCTCCACCTGGGGCAGACCAAGGAAGGAGAATCAGAATACAAGTTTGAGTGGCAAAAGACGTCCCCTGGAGGGAAGTCCGTCGATGCACCCCTCCGAGTTAATGGCAGAGATGCGAAACAGTGGGTTTGCCCTGAAGAAATGTGTCCTTGGAAGAAATTCTACTGTTTGTGATCCATCGCAGGAGTACGTTGtcaatgaagaagaggaggatcctGAGGTTGAATTCCTGAAGTCGTTGACCACTAAACAGAAAGAGAAGCTCCTCAGgaaacttgaTCGTCTACAAAAGAAGAGTGAAGGAAATCAGAAGAAGGACCGTGATAGTAGTGACAGCTCCAGTGAAAGTAGTAGCAGTGACTGACTGACAGCTCCAGTGAAAGTAGCAGCAGTGACTGACTGACAGCTCCAGTGAAAGTAGCAGCAGTGACTGACTGACAGCTCCAGTGAAAGTAGCAGCAGTGACTGACTGACAGCTCCAGTGAAAGTAGCAGctgtgactgactgacagctCCAGTGAAAGTAGCAGCAGTGACTGACTGACAGCTTCAGTGAAAGTAGCAGCAGTGACTAAGAGTCAGAAGAGAAAGAAGAAAGGCAAGAGAAAGGACTCCTGTCGTGATGACAACACTGAGAGTGATGGATGAGTCTAGAGTAAGACCAGGCCCAACCTCCAGACAGAAACATCACAAAGATGAtaccagagaggagaaagaaacagTAGAGATGAGACACGACAGCAGGGAAAGGCAGAGAACCAGCAGCAGCTCCCAGCCTGacccagacagaagcagaaggagaGGGATATAAAGACAAGGTTcctagatggagggagggagagaggggggaggcagagggaggagcaggagcagagggagggagaatgagaaaaGAGCCAGAGGGAGAGCTGAGAGAAAGCACTGAACTGTGAGAGTGGACAATCTTACAAAGTGGGCCAGTGATACCATTTTATTTTACTGATGTAAACATTTTTGACACGTTTTGACGATTTTATGATGCTATTGTTAATATGTACATTTTTCTTGGTGGGCCCACTTATTaaacaaacacatagaaaccaagTTTTAGTAACACCATGTTTTGGTGTTGCATGCTAGTTGGCTGCTACGGTCAAATGAgtgcaggggtgtattcattatgcCGATTATGTTGCAAAATGTTGAGCAGAAGCAAACTGAATGAAACCGGGAGGGGCCTACCTGAATTTGACCAATAGAAACTGTTCAAAATGTTCCATTTTGCTACTGTTAGGACTAGTGATTACACCCCTGCTCCTCAAATAGTTATTATTTTCATCCACTAGAGGGCAGCAGTAGACCTAAAATAACTTGAACCACAGAAATATTTTTCATTTGTCAGATTATTGAACAAATGCATGTCTTGCATGCACTTTTATTGATGGTTGTCACTTTAGTCCAGAAAACCCTCTTCAGAATTctaataaaaaatattatttgcaACTCGAATTTTAAAAATAGTGAACTGTG
>TU305027
GAAGATTTTAACCacgttgttttgtttttgtcagCGCGAGCTAGCTAACATTTCGCTTTTAATCCCCTAACTAATTGTTCTTCAGCCATTGGGAAGTAATTTGCTAATTGTAAGTGCAATAAAGTTTTTCCATCCTGCATCGAAGTCAAATATATAAAAAGGCTGTTGGTGGGAGATGATCTGTGAAGAATGGTCTCAACTTCATGTATGAAGCTCCACCTGGGGCAGACCAAGGAAGGAGAATCAGAATACAAGTTTGAGTGGCAAAAGACGTCCCCTGGAGGGAAGTCCGTCGATGCACCCCTCCGAGTTAATGGCAGAGATGCGAAACAGTGGGTTTGCCCTGAAGAAATGTGTCCTTGGAAGAAATTCTACTGTTTGTGATCCATCGCAGGAGTACGTTGtcaatgaagaagaggaggatcctGAGGTTGAATTCCTGAAGTCGTTGACCACTAAACAGAAAGAGAAGCTCCTCAGgaaacttgaTCGTCTACAAAAGAAGAGTGAAGGAAATCAGAAGAAGGACCGTGATAGTAGTGACAGCTCCAGTGAAAGTAGTAGCAGTGACTGACTGACAGCTCCAGTGAAAGTAGCAGCAGTGACTGACTGACAGCTCCAGTGAAAGTAGCAGCAGTGACTGACTGACAGCTCCAGTGAAAGTAGCAGCAGTGACTGACTGACAGCTCCAGTGAAAGTAGCAGctgtgactgactgacagctCCAGTGAAAGTAGCAGCAGTGACTGACTGACAGCTTCAGTGAAAGTAGCAGCAGTGACTAAGAGTCAGAAGAGAAAGAAGAAAGGCAAGAGAAAGGACTCCTGTCGTGATGACAACACTGAGAGTGATGGATGAGTCTAGAGTAAGACCAGGCCCAACCTCCAGACAGAAACATCACAAAGATGAtaccagagaggagaaagaaacagTAGAGATGAGACACGACAGCAGGGAAAGGCAGAGAACCAGCAGCAGCTCCCAGCCTGacccagacagaagcagaaggagaGGGATATAAAGACAAGGTTcctagatggagggagggagagaggggggaggcagagggaggagcaggagcagagggagggagaatgagaaaaGAGCCAGAGGGAGAGCTGAGAGAAAGCACTGAACTGTGAGAGTGGACAATCTTACAAAGTGGGCCAGTGATACCATTTTATTTTACTGATGTAAACATTTTTGACACGTTTTGACGATTTTATGATGCTATTGTTAATATGTACATTTTTCTTGGTGGGCCCACTTATTaaacaaacacatagaaaccaagTTTTAGTAACACCATGTTTTGGTGTTGCATGCTAGTTGGCTGCTACGGTCAAATGAgtgcaggggtgtattcattatgcCGATTATGTTGCAAAATGTTGAGCAGAAGCAAACTGAATGAAACCGGGAGGGGCCTACCTGAATTTGACCAATAGAAACTGTTCAAAATGTTCCATTTTGCTACTGTTAGGACTAGTGATTACACCCCTGCTCCTCAAATAGTTATTATTTTCATCCACTAGAGGGCAGCAGTAGACCTAAAATAACTTGAACCACAGAAATATTTTTCATTTGTCAGATTATTGAACAAATGCATGTCTTGCATGCACTTTTATTGATGGTTGTCACTTTAGTCCAGAAAACCCTCTTCAGAATTctaataaaaaatattatttg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005048133.1 False 1878 mRNA 0.44 6 49867187 49871478
XR_002472943.2 False 1696 mRNA 0.44 6 49867187 49871675
XR_002472942.2 False 1754 mRNA 0.44 6 49867187 49871681
TU305027 True 1688 TUCP 0.44 6 49867217 49871645

Neighbor

gene id symbol gene type direction distance location
LOC110520118 LOC106586238 coding downstream 5111 49814771 ~ 49862076 (-)
sp3a LOC106586237 coding downstream 65160 49794657 ~ 49802027 (-)
LOC110520112 LOC106586230 coding downstream 259073 49563841 ~ 49608114 (-)
LOC118944672 NA coding downstream 364162 49494001 ~ 49503025 (-)
dlx2a dlx2 coding downstream 389070 49475978 ~ 49478117 (-)
LOC110520120 LOC106586242 coding upstream 7429 49879110 ~ 49895110 (-)
LOC110520121 LOC106581751 coding upstream 23646 49895327 ~ 49901575 (-)
LOC110520122 LOC106586243 coding upstream 33752 49905433 ~ 49920328 (-)
atf2 atf2 coding upstream 90786 49962467 ~ 49978892 (-)
LOC110520125 atp5g3 coding upstream 107515 49979196 ~ 49981870 (-)
G268502 NA non-coding downstream 60517 49806408 ~ 49806670 (-)
G268501 NA non-coding downstream 62008 49804977 ~ 49805179 (-)
G268467 NA non-coding downstream 72570 49791748 ~ 49794617 (-)
G268462 NA non-coding downstream 128737 49738222 ~ 49738450 (-)
G268457 NA non-coding downstream 135840 49730949 ~ 49731347 (-)
G268470 NA non-coding upstream 51316 49922997 ~ 49930662 (-)
G268548 NA non-coding upstream 69195 49940876 ~ 49945765 (-)
G268560 NA non-coding upstream 89234 49960915 ~ 49961213 (-)
G268673 NA non-coding upstream 174245 50045926 ~ 50046290 (-)
G268310 NA other downstream 371384 49495477 ~ 49495803 (-)
LOC110505248 gcg other downstream 1833885 48032036 ~ 48033434 (-)
G265988 NA other downstream 2267372 47599218 ~ 47599815 (-)
LOC110520139 LOC106586251 other upstream 568524 50440201 ~ 50442930 (-)
LOC110520160 LOC106586095 other upstream 1256759 51126600 ~ 51130404 (-)
fgf9 NA other upstream 1601643 51471899 ~ 51478510 (-)
il1rl1 il1rl1 other upstream 1725718 51596933 ~ 51619476 (-)

Expression


Co-expression Network