LOC110520121 (LOC106581751)


Basic Information

Item Value
gene id LOC110520121
gene name LOC106581751
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49895327 ~ 49901575 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597196.2
ACAACAATACTGTTCCCCATTACAGAACATGAAGAAGCAAGTCAGCGTTGCCATTATTCTGACCACGTTTTGAAGTAGTACAGAAATCAATGTTGTCACCTTGCTAGCTGCTCACCCTCTATTCGAAGACTCAAGACATTGGATACCCCAGATTTGATGGGCAAATAACACAAAAATGAATCGGCTGCTTTTTGTTTCTCATCTTCTTATCATTCTTACAGGTTCTGCCTGGGGCTCTGATGATGAGACCCGTCTGGTGAAAACCCTGTTCACTGGCTACAACAAGGTGGTGCGTCCTGTCGCTCACTTCAAGGACCCAGTGGTGGTTACAGTTGGCCTGCAGCTCATTCAACTCATCAGTGTGgatgAGGTCAACCAGATTGTTAACAGCAATGTTCGACTGAAACAGCAATGGAAGGACGTGAACTTGCAATGGAATCCTGAGGATTATGGTGGAATCAAAAAGATAAGAGTGCCCTCCACTGACATTTGGCGCCCTGACCTCGTTCTCTATAACAATGCTGATGGTGACTTTGCCATCGTTCACGAGACCAAAGTGCTGCTGGAACACACTGGCATGATCACGTGGAACCCCCCTGCCATCTTCAAGAGCTACTGTGAGATCATCGTGCTGCACTTCCCCTTCGACCTGCAGAACTGCAGCATGAAGCTGGGTACCTGGACCTATGATGGCAACTTGGTTGTCGTCAATCCCGACAGCGATCGTCCTGACCTGAGTAACTtcatggagagtggagagtgggtgATGAAGGACTACCGCAGCTGGAAACACTGGGTGTACTATGCCTGCTGCCCAGACACGCCCTACTTGGACATCACCTACCACTTCCTGATGCTGCGGCTGCCCCTCTACTTCATCGTCAACGTCATCATCCCCTGCATGCTCTTCTCATTCCTCACTGGCCTCGTCTTCTATCTGCCCACTGACTCTGGTGAGAAGATGACTCTGAGTATCTCTGTCCTGCTGTCTCTGACTGTGTTCCTGCTGGTCATCGTTGAGCTCATCCCCTCCACATCCAGTGCTGTGCCGCTCATCGGGAAGTACATGCTCTTCACCATGGTTTTCGTCATTGCCTCCATCATCATCACTGTCATCGTCATCAACACCCACCACCGTTCCCCCAGCACTCACACCATGTCCCCCTGGGTTCGCAAGATTTTCATTGACACCATTCCCAACCTCATGTTTTTCTCAACAATGAAACGTCCGGCAAAGGAGAAACAGGATAAAAACATCTATGGTGCTGACTTTGACATCTCAGACATCTCAGGCAAGCCCACCCCTACTGCAGTCACCTACCAGTCCCCCATCACCAAGAACCCCGACGTACGCAGTGCTATTGAGGGGGTGAAGTACATCGCTGAGACCATGAAATCTGATGAGGAGTCCAACAGTGCTGCTGAAGAGTGGAAGTTTGTGGCCATGGTGCTGGATCACattctgctgtgtgtgttcatggggGTGTGTATCATTGGCACACTGGGGGTGTTCGCAGGCCGTCTCATTGAGCTGAGCATGACGCCCTAGAGGTCTGCGGTGTGTCATGTATAGTGCCAGACGTTTTAattgacctgaccaggaaaaacctCTGGGCCTAAGTGACTCTAAAAGTCAAATATTGCTGTGTGTAGACTTGCTTGCTGCTGTTTTTGACCCTCCTGTTAACAGTATAAACATGCATTATTATTGGGTGGTTTGcaatttgtcacaccctgatctgtttcacctgtctttgtgattgtctccaccccctccaggtgtcgtccatcttccccattatcccctgttctctgtttgtctgttgcctgtTTGCTTTCTTTTGTCAAGCTCACCAGCAGTTTTCCTTCTGCTCCTGTCGctcgattgttcctgtttcctagttgaccattctgtctgcccctgaccctgcctgctgtcctgtatctttgccccacctatctggattacttaCCTCTGCCGGCCCTTGACCTGCCTTTTGCATGCCCCTGTTCtattaataaactgttgttacttcgactttgtctgggtcttacctgaaacataCAATTAGCTCAGATTGCTGGGTGCATGCATGTTTATCCATATTTTCACTAATGTGTGTTAATTTTCGAGCAGTTGAGCCACATTCTAATCAAGTTTATTGTAATCAAGGTATTTGTTCTAGTTCCTCAATGCATTTTTTAATATGTTTTCATGAATCTATAATTCAGTATTTAATAAATAAAGTCCATAC
>XM_036974448.1
ACAACAATACTGTTCCCCATTACAGAACATGAAGAAGCAAGTCAGCGTTGCCATTATTCTGACCACGTTTTGAAGTAGTACAGAAATCAATGTTGTCACCTTGCTAGCTGCTCACCCTCTATTCGAAGACTCAAGACATTGGATACCCCAGATTTGATGGGCAAATAACACAAAAATGAATCGGCTGCTTTTTGTTTCTCATCTTCTTATCATTCTTACAGTCTTCTGATGCTGTAAACCCCAAACTGTACCATGCGAGCCATACACCAAGCTGTCTCTGGTTTCCTTGGAGGTTCTGCCTGGGGCTCTGATGATGAGACCCGTCTGGTGAAAACCCTGTTCACTGGCTACAACAAGGTGGTGCGTCCTGTCGCTCACTTCAAGGACCCAGTGGTGGTTACAGTTGGCCTGCAGCTCATTCAACTCATCAGTGTGgatgAGGTCAACCAGATTGTTAACAGCAATGTTCGACTGAAACAGCAATGGAAGGACGTGAACTTGCAATGGAATCCTGAGGATTATGGTGGAATCAAAAAGATAAGAGTGCCCTCCACTGACATTTGGCGCCCTGACCTCGTTCTCTATAACAATGCTGATGGTGACTTTGCCATCGTTCACGAGACCAAAGTGCTGCTGGAACACACTGGCATGATCACGTGGAACCCCCCTGCCATCTTCAAGAGCTACTGTGAGATCATCGTGCTGCACTTCCCCTTCGACCTGCAGAACTGCAGCATGAAGCTGGGTACCTGGACCTATGATGGCAACTTGGTTGTCGTCAATCCCGACAGCGATCGTCCTGACCTGAGTAACTtcatggagagtggagagtgggtgATGAAGGACTACCGCAGCTGGAAACACTGGGTGTACTATGCCTGCTGCCCAGACACGCCCTACTTGGACATCACCTACCACTTCCTGATGCTGCGGCTGCCCCTCTACTTCATCGTCAACGTCATCATCCCCTGCATGCTCTTCTCATTCCTCACTGGCCTCGTCTTCTATCTGCCCACTGACTCTGGTGAGAAGATGACTCTGAGTATCTCTGTCCTGCTGTCTCTGACTGTGTTCCTGCTGGTCATCGTTGAGCTCATCCCCTCCACATCCAGTGCTGTGCCGCTCATCGGGAAGTACATGCTCTTCACCATGGTTTTCGTCATTGCCTCCATCATCATCACTGTCATCGTCATCAACACCCACCACCGTTCCCCCAGCACTCACACCATGTCCCCCTGGGTTCGCAAGATTTTCATTGACACCATTCCCAACCTCATGTTTTTCTCAACAATGAAACGTCCGGCAAAGGAGAAACAGGATAAAAACATCTATGGTGCTGACTTTGACATCTCAGACATCTCAGGCAAGCCCACCCCTACTGCAGTCACCTACCAGTCCCCCATCACCAAGAACCCCGACGTACGCAGTGCTATTGAGGGGGTGAAGTACATCGCTGAGACCATGAAATCTGATGAGGAGTCCAACAGTGCTGCTGAAGAGTGGAAGTTTGTGGCCATGGTGCTGGATCACattctgctgtgtgtgttcatggggGTGTGTATCATTGGCACACTGGGGGTGTTCGCAGGCCGTCTCATTGAGCTGAGCATGACGCCCTAGAGGTCTGCGGTGTGTCATGTATAGTGCCAGACGTTTTAattgacctgaccaggaaaaacctCTGGGCCTAAGTGACTCTAAAAGTCAAATATTGCTGTGTGTAGACTTGCTTGCTGCTGTTTTTGACCCTCCTGTTAACAGTATAAACATGCATTATTATTGGGTGGTTTGcaatttgtcacaccctgatctgtttcacctgtctttgtgattgtctccaccccctccaggtgtcgtccatcttccccattatcccctgttctctgtttgtctgttgcctgtTTGCTTTCTTTTGTCAAGCTCACCAGCAGTTTTCCTTCTGCTCCTGTCGctcgattgttcctgtttcctagttgaccattctgtctgcccctgaccctgcctgctgtcctgtatctttgccccacctatctggattacttaCCTCTGCCGGCCCTTGACCTGCCTTTTGCATGCCCCTGTTCtattaataaactgttgttacttcgactttgtctgggtcttacctgaaacataCAATTAGCTCAGATTGCTGGGTGCATGCATGTTTATCCATATTTTCACTAATGTGTGTTAATTTTCGAGCAGTTGAGCCACATTCTAATCAAGTTTATTGTAATCAAGGTATTTGTTCTAGTTCCTCAATGCATTTTTTAATATGTTTTCATGAATCTATAATTCAGTATTTAATAAATAAAGTCCATAC
>TU305117
CAAGTCAGCGTTGCCATTATTCTGACCACGTTTTGAAGTAGTACAGAAATCAATGTTGTCACCTTGCTAGCTGCTCACCCTCTATTCGAAGACTCAAGACATTGGATACCCCAGATTTGATGGGCAAATAACACAAAAATGAATCGGCTGCTTTTTGTTTCTCATCTTCTTATCATTCTTACAGGTTCTGCCTGGGGCTCTGATGATGAGACCCGTCTGGTGAAAACCCTGTTCACTGGCTACAACAAGGTGGTGCGTCCTGTCGCTCACTTCAAGGACCCAGTGGTGGTTACAGTTGGCCTGCAGCTCATTCAACTCATCAGTGTGgatgAGGTCAACCAGATTGTTAACAGCAATGTTCGACTGAAACAGGTTTGTTTCTGCCATTTCCTGTATCAACATGGCAATATAAATATGAGATGAAAGTATTTTTCTTTCTGGCTATTTTGTAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597196.2 False 2255 mRNA 0.48 9 49895327 49901575
XM_036974448.1 False 2326 mRNA 0.48 9 49895327 49901575
TU305117 True 453 TUCP 0.43 3 49900173 49901538

Neighbor

gene id symbol gene type direction distance location
LOC110520120 LOC106586242 coding downstream 217 49879110 ~ 49895110 (-)
LOC110520119 NA coding downstream 23646 49867187 ~ 49871681 (-)
LOC110520118 LOC106586238 coding downstream 33251 49814771 ~ 49862076 (-)
sp3a LOC106586237 coding downstream 93300 49794657 ~ 49802027 (-)
LOC110520112 LOC106586230 coding downstream 287213 49563841 ~ 49608114 (-)
LOC110520122 LOC106586243 coding upstream 3858 49905433 ~ 49920328 (-)
atf2 atf2 coding upstream 60892 49962467 ~ 49978892 (-)
LOC110520125 atp5g3 coding upstream 77621 49979196 ~ 49981870 (-)
lnpa LOC100194569 coding upstream 182525 50084100 ~ 50099697 (-)
evx2 evx2a coding upstream 218094 50119669 ~ 50124620 (-)
G268502 NA non-coding downstream 88657 49806408 ~ 49806670 (-)
G268501 NA non-coding downstream 90148 49804977 ~ 49805179 (-)
G268467 NA non-coding downstream 100710 49791748 ~ 49794617 (-)
G268462 NA non-coding downstream 156877 49738222 ~ 49738450 (-)
G268470 NA non-coding upstream 21422 49922997 ~ 49930662 (-)
G268548 NA non-coding upstream 39301 49940876 ~ 49945765 (-)
G268560 NA non-coding upstream 59340 49960915 ~ 49961213 (-)
G268673 NA non-coding upstream 144351 50045926 ~ 50046290 (-)
G268700 NA non-coding upstream 176209 50077784 ~ 50077987 (-)
LOC118944672 NA other downstream 392356 49494001 ~ 49503025 (-)
G268310 NA other downstream 399524 49495477 ~ 49495803 (-)
LOC110505248 gcg other downstream 1862025 48032036 ~ 48033434 (-)
LOC110520139 LOC106586251 other upstream 538630 50440201 ~ 50442930 (-)
LOC110520160 LOC106586095 other upstream 1226865 51126600 ~ 51130404 (-)
fgf9 NA other upstream 1571749 51471899 ~ 51478510 (-)
il1rl1 il1rl1 other upstream 1695824 51596933 ~ 51619476 (-)
LOC110520182 NA other upstream 2806608 52693956 ~ 52708816 (-)

Expression


Co-expression Network