LOC110520125 (atp5g3)


Basic Information

Item Value
gene id LOC110520125
gene name atp5g3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49979196 ~ 49981870 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597204.2
GCACTTCTCTACTGTGGTTCGACCTTCTACAGTCGGTAAGAGGGATATGTTAGACATTGTCCATTGTAAATCCTTTTTCATCCTTCTTTAAAACAACACCTAGCACAACACAAAAAGACCCGGCTTCAATCAAATTTGACCGACCAGGTTAAAACAGACTAAATTGATCATGTACGCCTGTGCAAAGTTCGTCTCCACGCCGGCTCTGGTCCGTGCTGGCTCCCGTGCTCTTTACAGACCCCTGTCTGCCTCTATGCTGTCCAGGCCTGAGGTCAATACAGAGAGAAACGTAGCCCTCATGCCACAGAGCCCCTTCACCCAGGTAGCTCTCAGAGGCTTCCAGACCAGTGCTGTGAGCAGGGACATTGATACCGCTGCCAAATTCATTGGTGCTGGAGCCGCCACAGTCGGAGTGGCTGGATCTGGTGCTGGAATTGGAACAGTGTTCGGCAGTCTCATCATTGGATATGCCAGGAACCCATCATTGAAGCAGCAGCTCTTCTCCTACGCTATCCTGGGATTTGCCCTGTCTGAAGCTATGGGCCTATTCTGTTTGATGGTTGCTTTCTTAATCTTGTttgctatgtaaaaaaaaatctgtctatAGAAACTGTAATTACAGATGTGACTACATATTTTATTGTGGCTACCAAAATTGTTCTGTGTTGGTGTCATGGAAATGTACATTTTCAAGTCTGTCCGACACTCTCAAAATAACAGAAACATGTATTGTAAAAAATGTAAGAAATTACATAATTAAAATGCATGTATTTGACTAGTTGACATATGGCAGTATGTTTTCTATGTAAGGAATCATGTTTCACCACAATCAAGACGCCAACTAGCTTCTATTGAATGTCAACATGGGATTATACAAAGGAACTGCTTAGACGTAATGTAAATCAGTCTGGTGCATTTGCCATTTTCAGTGCATCATGTGTTTGCTTCTGTGGGTCCACATTTATGTTGTCGTTGGTTCAAGTGCAGGTCAATAGCATTCTGTAAGTAGGCAGCAAGTGGGCACTTTCTCTTGTAAATGGAATTAAATAAATCTAGACCACAATTTGATTGTGCTAAA
>XM_021597203.2
TTCCGTTGTCCCAAAATCTTCATCCGGGAATCTATAAACACCGAAATGCGCGTGCGCACTTCTCTACTGTGGTTCGACCTTCTACAGTCGAAAGACCCGGCTTCAATCAAATTTGACCGACCAGGTTAAAACAGACTAAATTGATCATGTACGCCTGTGCAAAGTTCGTCTCCACGCCGGCTCTGGTCCGTGCTGGCTCCCGTGCTCTTTACAGACCCCTGTCTGCCTCTATGCTGTCCAGGCCTGAGGTCAATACAGAGAGAAACGTAGCCCTCATGCCACAGAGCCCCTTCACCCAGGTAGCTCTCAGAGGCTTCCAGACCAGTGCTGTGAGCAGGGACATTGATACCGCTGCCAAATTCATTGGTGCTGGAGCCGCCACAGTCGGAGTGGCTGGATCTGGTGCTGGAATTGGAACAGTGTTCGGCAGTCTCATCATTGGATATGCCAGGAACCCATCATTGAAGCAGCAGCTCTTCTCCTACGCTATCCTGGGATTTGCCCTGTCTGAAGCTATGGGCCTATTCTGTTTGATGGTTGCTTTCTTAATCTTGTttgctatgtaaaaaaaaatctgtctatAGAAACTGTAATTACAGATGTGACTACATATTTTATTGTGGCTACCAAAATTGTTCTGTGTTGGTGTCATGGAAATGTACATTTTCAAGTCTGTCCGACACTCTCAAAATAACAGAAACATGTATTGTAAAAAATGTAAGAAATTACATAATTAAAATGCATGTATTTGACTAGTTGACATATGGCAGTATGTTTTCTATGTAAGGAATCATGTTTCACCACAATCAAGACGCCAACTAGCTTCTATTGAATGTCAACATGGGATTATACAAAGGAACTGCTTAGACGTAATGTAAATCAGTCTGGTGCATTTGCCATTTTCAGTGCATCATGTGTTTGCTTCTGTGGGTCCACATTTATGTTGTCGTTGGTTCAAGTGCAGGTCAATAGCATTCTGTAAGTAGGCAGCAAGTGGGCACTTTCTCTTGTAAATGGAATTAAATAAATCTAGACCACAATTTGATTGTGCTAAA

Function

symbol description
atp5g3 Predicted to enable ligand-gated channel activity. Predicted to be involved in ATP synthesis coupled proton transport and pore complex assembly. Predicted to act upstream of or within ion transport. Located in mitochondrion. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Orthologous to human ATP5MC3 (ATP synthase membrane subunit c locus 3).

NR:

description
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c-3

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008289 lipid binding molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02128 ATPeF0C, ATP5G, ATP9; F-type H+-transporting ATPase subunit c

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597204.2 False 1078 mRNA 0.43 5 49979196 49981815
XM_021597203.2 True 1055 mRNA 0.44 5 49979196 49981870

Neighbor

gene id symbol gene type direction distance location
atf2 atf2 coding downstream 304 49962467 ~ 49978892 (-)
LOC110520122 LOC106586243 coding downstream 58868 49905433 ~ 49920328 (-)
LOC110520121 LOC106581751 coding downstream 77621 49895327 ~ 49901575 (-)
LOC110520120 LOC106586242 coding downstream 84086 49879110 ~ 49895110 (-)
LOC110520119 NA coding downstream 107515 49867187 ~ 49871681 (-)
lnpa LOC100194569 coding upstream 102230 50084100 ~ 50099697 (-)
evx2 evx2a coding upstream 137799 50119669 ~ 50124620 (-)
nfe2l2a LOC106586247 coding upstream 343239 50325109 ~ 50332906 (-)
pde11a pde11a coding upstream 396530 50378400 ~ 50436074 (-)
LOC110520139 LOC106586251 coding upstream 458331 50440201 ~ 50442930 (-)
G268560 NA non-coding downstream 17983 49960915 ~ 49961213 (-)
G268548 NA non-coding downstream 33431 49940876 ~ 49945765 (-)
G268470 NA non-coding downstream 48534 49922997 ~ 49930662 (-)
G268502 NA non-coding downstream 172526 49806408 ~ 49806670 (-)
G268673 NA non-coding upstream 64056 50045926 ~ 50046290 (-)
G268700 NA non-coding upstream 95914 50077784 ~ 50077987 (-)
G268701 NA non-coding upstream 96249 50078119 ~ 50078323 (-)
G268702 NA non-coding upstream 98613 50080483 ~ 50080686 (-)
G268722 NA non-coding upstream 127070 50108940 ~ 50109195 (-)
LOC110520112 LOC106586230 other downstream 411722 49563841 ~ 49608114 (-)
LOC118944672 NA other downstream 476225 49494001 ~ 49503025 (-)
G268310 NA other downstream 483393 49495477 ~ 49495803 (-)
LOC110520160 LOC106586095 other upstream 1146570 51126600 ~ 51130404 (-)
fgf9 NA other upstream 1491454 51471899 ~ 51478510 (-)
il1rl1 il1rl1 other upstream 1615529 51596933 ~ 51619476 (-)
LOC110520182 NA other upstream 2726313 52693956 ~ 52708816 (-)

Expression


Co-expression Network