hoxd11a (hoxd11aa)


Basic Information

Item Value
gene id hoxd11a
gene name hoxd11aa
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50144655 ~ 50146492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597212.2
AGACAGTTCTTAATGACTGATATTGATATATGGTAATTCCTTAACCGGATCACATGACACAATTACCTCGAGAATCGATAAAGATGAATTGCACGTCAGCCTACGTTTCCGATTTTTTCTCCCTCGCGGGTCCTTTCCACGCGCCTATGGTGCAATAGATAGACAAAGTTTAACACACTCAAGCTGCCAATTCTATTTCGCTATAGCAAAAgggtgaaggggagagatggCGGAGTACGATGAGCGTGGCAACTGTGCGTCAAATATGTATTTACCGAGTTGTACATATTACGTTTCGGCGCCTGATTTTTCTTCAGTCTCCTCGTTTTTACCCCAGACTACTTCGTGTCAAATAAATTTTCCTTATTCTTCCAACATAGCTCAAGTCCAACCTGTTCGGGAAGTGTCTTTCAGAGACTATGGACTGGATCACTCAAACAAATGGCATTACAGGGGCAATTACGCTTCTTACTACTCAACGGACGAGATAATGCACCGAGACTTAATCCAGTCGTCGAACAGGGCGGAAATGATATTCAAAAATGATTCCTTGTACGGCCATCACGGCGGTACGAGCTCGCCATGCAATTTCTTCACAAATGTCGGCCGAAATGGGGTTCTTCCACAAGGGTTCGATCAGTTCTTAGAGACTGTTAACTCTGAGAAGCCCAACCCTGACGACTCAAAACAAAAGACACACTCCAGTCTCCCCGGAGATGCTGCGTGTAATAAACAGACTTCAGATAGGCCTACATCTGAGGAGTCTATACGAGACCCAACTGAGGACATAGACGAAGATGATTATTCGATATCAAACTGCGCTGGGGACAAGAACAACGGCCCAAGTTCTTCAAAGTCCAGAAAAAAGAGATGCCCCTACTCCAAATACCAGATCCGAGAACTTGAACGAGAATTCTTTTTCAATGTGTACATAAACAAGGAGAAGCGGCTCCAGTTGTCAAGGATGTTAAACCTGACAGATCGACAGGTGAAGATTTGGTTCCAGAACAGAAGAATGAAAGAGAAAAAGCTCAACCGGGACCGGCTTCAGTATTTCACTGGGAATCCCTTATTCTGAACCCTACGCATTTGGAGTCAATAGTTGCTAAATGCTTCACAACAGATTGAATAAAGAGTTTTTTGGGGGA

Function

NR:

description
homeobox protein Hox-D11a-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09296 HOX_11; homeobox protein HoxC/D11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597212.2 True 1148 mRNA 0.44 2 50144655 50146492

Neighbor

gene id symbol gene type direction distance location
hoxd12a hoxd12 coding upstream 3651 50139213 ~ 50141004 (+)
hoxd13a hoxd13aa coding upstream 8058 50134695 ~ 50136597 (+)
LOC118944674 NA coding upstream 80821 50044718 ~ 50063834 (+)
LOC110504188 scrn3 coding upstream 270438 49871807 ~ 49874217 (+)
LOC110520117 LOC106586239 coding upstream 278657 49862239 ~ 49865998 (+)
hoxd10a hoxd10 coding downstream 319 50146811 ~ 50153227 (+)
hoxd9a hoxd9aa coding downstream 9343 50155835 ~ 50158848 (+)
hoxd3a hoxd3 coding downstream 15786 50162278 ~ 50184327 (+)
hoxd4a hxd4a coding downstream 23109 50169601 ~ 50172397 (+)
LOC110505268 hoxd1aa coding downstream 40673 50187165 ~ 50188694 (+)
G268714 NA non-coding upstream 41599 50102779 ~ 50103056 (+)
G268604 NA non-coding upstream 59498 50084110 ~ 50085157 (+)
G268620 NA non-coding upstream 101112 50043333 ~ 50043543 (+)
G268618 NA non-coding upstream 108632 50035823 ~ 50036023 (+)
G268877 NA non-coding downstream 85979 50232471 ~ 50232690 (+)
G268956 NA non-coding downstream 146193 50292685 ~ 50292893 (+)
G268970 NA non-coding downstream 166020 50312512 ~ 50312731 (+)
G268938 NA non-coding downstream 174995 50321487 ~ 50322542 (+)
G268939 NA non-coding downstream 176277 50322769 ~ 50323146 (+)
G267529 NA other upstream 289153 49836617 ~ 49855502 (+)
G267381 NA other upstream 588817 49554498 ~ 49555838 (+)
G267358 NA other upstream 632180 49510803 ~ 49512475 (+)
LOC110520046 LOC106586167 other upstream 3312411 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 3959851 46184134 ~ 46184804 (+)
LOC110520146 ino80d other downstream 455810 50601983 ~ 50618761 (+)
G269291 rap2a other downstream 752097 50898589 ~ 50900277 (+)
LOC110520169 il1rl1 other downstream 1427488 51573980 ~ 51582567 (+)
acvr2aa LOC106586327 other downstream 3020460 53124656 ~ 53172428 (+)

Expression


Co-expression Network