hoxd10a (hoxd10)


Basic Information

Item Value
gene id hoxd10a
gene name hoxd10
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50146811 ~ 50153227 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597213.2
CTTTGAGTAGATTAATCAGTCAAGTAGACTACAAACAGTAATTTATAATAGTAGAATTATGTATGCATTTAGTAGAAGCATGTGATGTATATTGTGGTTATGTGATATCAAAATAAAGTACACATGGCAAATGTAGTTATGCGTTACCTCATGTAATTGCAATCACAACGAACTAATTTCGTATAACTTTGGTCAGGATCCACATTTGGCATAGAAAAAAAGTTATGCATAATTTCATACAATTCAACAAGGTTTTTCATACTCTACTATAGGGATGCTCTTGTCAAAGCAATCTGATAAATTTGTAAATTACCAATTGCACTGGCACTAGTAGTTATATCAGTAGGCCACAGGACTATACAGTGAATTTCCTGTTATTATAGCCAAGCAGTAGCGCCTCTTACTTGCTTCAACTTCAAAGTTTAGACTATACCTTTTATTCCCTTTATTTTGTCCTTACACTTAGGCGGTTTTCTAAACCTTGAACCGTCTAGACAGTATACTAAAAACTAGCTGTAAATGTCTAAATTGGGGGCTATTGGACCCTCTGGCCACTCCAAATGCGGCCCTACCACAAAATAGTCTAGAAGAATGcagtaggctactgtttactTGTCAGGCTATTGCATTTAAAGGAACGCAAAATGTTCACGATCAAAACGATCTATTACTTTATATAAGCATTTATAGTATATATTTTTCATATTTAACTTCAATTGGCAAGACCATAAAAGCGAAGAAAACCCATACGTACAAGGCCTATGATTTGATTTGGCAGCTTTAAAAAAGTGGTGTatttattataattgttttaattATTTGTATCAAATAGCCTATTGTTAATTGAATTAATAAATGTTCTTCCCTGCCTTTGAATTTCCCGTATAACTTCAATGTCGTCACCTATCACTTATTTATTAATAATTAGGCTATTGGCGCCTTTTGGCTGATGTCTTGAAAAACGACGCCTCCTGAATGATATCTGCATTGCAGTAGGATTCCAATATGGCTGCGAAGCAGTGAGTTTTCCTGTATGAAAAGTAAGCAGATACAGCGATACAGTTTCTGGTTTGAAGTTGACAACTATCTTCTACATACTAACCAATTAAGATGTTGCATTACATTTAGCCTAATGCAATATTCATGAAATCATCCGCAATCTTCTGATGTGGTAGCATTACACACGACTTCTACATTCTTACAAGAGTATAATATAGTTTAGCTTAAGTAACAACACTGAAACCAAAAATATGTGTCATAATCAAGGGTTTAATTCGAATCCACGGATAGGTCCCTCGTGTGTTAGAATTTAACAAAGTAAGGCAGTGCACTGTAGTGTACTAAAAGTGAACCGGTCGACCAGTGTGTCATCCTAAATAAGCCTAAATATTTCTGTGACCAGTGATTTTTTTCACTTTTAGCATCGCGCAATGATTTTCTTTCCGCTGAAAAATGTAGGCCCAGGTGGTCTAATAGGCATGTTGGACATGTTAGTGTATCTGATCATTCGAATTGTGCTCCTAGCTGTAGGAAATAAgtcgcaaacacacacatatcagTCAGTCTTTTGATTTAACATTTTTATTGGGTTTTTGGTTCAAGAAAGCCTAGTTGGGGAAGAAACATTTGTGCAGACAAATGTGCAGACTGCTCGTTCCTATTCTAACCACACGAGGGCAGACGTGTTGCAAGTTTCGGTCTGAGTTTGTTCATGAAAACACACATAGGTTGAATTACAGCTGTGGTCTGGAATATTATTGAAAGGCTTGTAAATGTTCTTGTTTGTGGTTTGGTGATATAATGTAGCATACGTTCAGTGATCTGGCTGTCTTTTTTGACTTGACTTCCTTCTGGTAAACGTAGCTTAATTCAAATTAAAATTAAAACACAAGCAGACTGTGTTTCGTTCATGCATTCCATGCATTGCAATCAAAGGGGCACCATCACTGTTCCTAACGCCACCATTTTAAAGTGGATTAAACAGTAGCCTTAACTATGTGGATTTGTAtatcataggcctataggagACACCAAGTCCAACTTGACCCTGGCATATATTGGACATGACTTGAAATAATGCTGGGTTAAACTTAGTTTCCATTCCAAGGAAACCCTAAAGTACTTAAATACTTGTTACATGATGGAATAAGGCACATGACCTCTCTGGATTCCTCAATCAACCCTGGTTAGACTGAAATTGTCGTGTGCATTATCGATGCATTAAACTAGGTATTTTGATTTGGACGGCCGCTAAGCCTTATCTAGTAAATATGATGTCTAATCATTTCAACCGATGTTACCTGATAGGGCAAAAGGATGATTTAAAATGGGATGTGTAAACCTAAAATGTTGAATAGACCAATGGGTTTGTATTTTACGGAATTATTTGCTTAATTATTAAATGCCCTGTAATCACGGTCAGAACACCTGGATGGTTTTGATGTTGTATTCCTGAAGTTAAAAACCACACATGGCACACTGGTGAATTCGTAACGTATCCTAAAACGTGagttgttcattttctatgtttaaTAGAAGCATATTGTATGTCTGCATTTTTTTTTGCGTAATTTACCATTTGGCATGTATATCCGTATAGGACATGTATAACTTAAAACATATTTTGGAGAGCAAATTCTATTTGAGGCTATTGTTCATTTAGACATATATTGGAGCAGCCTACACCTATATATCGCACTTGTAATTAATTCCTTATATTGTCATCTTTCGCACTCTTCTTTCGATCGAGCTTATATGTTAGATTTCTCAAAAGGGCATTTGAAGCATCTTCATATTAGGGTTGACCTGAAGCATTGTTTTTGGCCTACAACCTTGAAGGTTAAGCTTCAGACGTAGGGCTAGGCTGTTGTTGGACGTCCTTGGATGTGCGCTCTCATTGTTGAAATCATGTTTAAAAAACAATGCTCCCCTTACGCGTGCATGCATGTATTTGGGTTAATTTACAGGTATGGAGGCTATCATAGGTTCATTTACAAAAATCGATGCTTAAATTTCAGGAAACATCAAGAAACAAATGTACATAGGCCACAAATAAATATATAGCCTATTAGATATAATCTATATGCTGATATTTTCCTCGCATATTTATTTTGTTTAGTAATCTACGTGCACAAACTTGGCTCATTGAGGTAGGCCTATTCAGAGTGTCATTAATGGCGTCCTCTAAATACAATTAGTATTCGTATTCTGCAAATAATCTGTTTCTGTATACTTGTTGATTGGTGAATGTATTGCTATTTCTCTGGGTAAAAAAAATCCACATCGTCTACCTATTTGAAAACGTGGACCTGCTAAACCGATGTGAGATGCTGAATTGAGAAAAGGTGTGTGTTTAGCGCTGTCGTGGATTGTTATTAAAATGCATTACTTTCCTATTCCGTCATATAGGTCACAAAGAAACTAAGTGCGCCATACCCAGAGCAGGCATTCAAAGGCTATTACAATTGTTCTGAAAAAATTAGAACCGGGTAATCGATATCACCTTTGTGTAGGCTTTCCTTGCATTTTCACTTTGAGAGAATAACATCCTACTTAAACCAGACGCTGTTTAATTAAGAATTCAacgacaacaaaaaaatataggcCTATTATAGTCATATTTGTTTTTAATTTTGGTTGTAATTGTTTAATTACCTCCTGTAAATGGATTTTTCTATCCAGTTAGGATTAGATTTCGATCACTACACCGTCATTATTTTTAGTTAATGTCAAAGGATTGGCTTTAGTAGTTCTACAGCCGATAAAAGTGAGTAGAGTACCTATTAGTCGTGAACTTAAATGGTGTTAAAGGTGTTCAAAGTTGTCAAGGTATGGCCATTGGAGCTTGATGCAACTGTACATTATTTTCAGGTTAAGACCATGCACATCAGCTTTGATTTTGTTTCATGCCAAGCAAAgagaacaggctaaatgttcaAGATGTCCTTTGTCAGTCTTGGAATCAATTTCAAGTCCGTGTTCTAGGTGTCGCTGTTGACCACGTCTGCCTCCCAGCCATGAGTCAATTCGTCCATGTGATGGGAAAAGAGGCTGCGTCTCAAGGCCATTTTCAAATTTCATTGGTGAGCTTGTCATGTGGTAGAGAGGCATCCTGAGCAACACGGAGATTGTTGTGCTAGATATGTCAGCCTACAAAGGACATCTCTCTCCTTTTTAAACCTTCTCCAAAAATGTCCTTTCCCAACAGCTCTCCTGCTGCAAATACGTTTTTAGTTGATTCGTTGATTGGCGCTTGCAGAACAGACAGCTTTTACTCCAGCAGCAACATGTACATGCCGTCCGGTGCAGAAATGGGAACTTATGGAATGCAAACCTGTGGACTCCTGCCGTCTCTCGGTAAACGAGGGGACGTCAACCACCAAAATATGGGCATGAATGTCCACTCTTACATACCTCAAATTGATAACTGGACAGATCCGAATAGATCTTGCAGAATAGAGCAACCATCCAACCAGATGCCCAATTGCACATTTTCACAAAACATTAAGGAGGAGAGTAATTACTGCATGTATTCAGACAAGATAGCAAAGGTCAACTCGTCCGATGTCCCTGTATATTCTAATATAATCCCCGAATCGTGTTCAGTTGATGGCCCCGAGATCCCTGTTCCGGGCTATTTCAGACTGAGCCAAACTTACGCGAGTGGGAAACACCAAGACTATGGCCACGAGATGACGAGTCCAAACACCACATTGATGCAGCTCAACAGAATTACTCCCAAACCGCAGTTGTCATCCTTTGTCGAAGTGGAAAAGAAAACAGATGATATACCGCATAACCGGGAGATCAGCAGGACACCCATCCCCGCGGAAAGCCCGGACCCAAAGTCGAGCGCGCAGGAGGAGAAGAATTGCTCCACTGAAGCTTCAGTCTCCAGCCCAGAGTTGCCAAAGAAGGAAGCGAAAGATAACAAAACTGACCCTCCAACGAGCAATTGGTTGACTGCAAAAAGCGGCAGGAAGAAAAGATGCCCCTACACAAAGCACCAGACGCTGGAATTGGAAAAGGAGTTTTTATTCAACATGTACCTGACTCGAGAGCGCCGTCTAGAGATCAGTAAAGGCGTCAACCTCACCGACAGGCAAGTCAAGATCTGGTTTCAAAACCGCAGGATGAAGCTCAAGAAAATGAGCAGGGAAAACCGAATTCGGGAACTTACCTCAAATCTCACCTTTTCGTGAGCATGCTTACAAATGCCTGTTTAAttgtccctttcctctctcttcaaaGTAGTGCTGTGGCAGCATTGgacttgtttttttgtgtgttttttttcactGAAACTGTGACTGTATTTGCTATTTTTGTCTCATTTACATTGTGACGCATTGTGTATTTTGAATGTTTCATCACAGGGTACATACAGGAGGCTAGGTCTTAAATTATTAAAATATAGTAGGTATTCATTATTGGACTGTTTGGTTTGGTTGAGTCTAAGGAAGTCACAGTGACTTGTTTGTAAGATATTTTTTTTCGGACATGAAAGCACATTAATAGTGGTTGAATAGTTAAACATTCGTTTAAGAGTTAAGCGCAAACCGTCAGCTGAATCGTAAGTAATCTTATAAACGTTTCTGTATTATAAATGTGGTGAGCAATGTAAATGAGTGTACATCTTATGCATGTTTGTGGCATGTATCCTGCAATAAATTGATTGTCAAATGTAA

Function

symbol description
hoxd10 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including limb morphogenesis; neuron differentiation; and regionalization. Located in cytoplasmic ribonucleoprotein granule; cytosol; and nucleoplasm. Implicated in congenital vertical talus.

NR:

description
homeobox protein Hox-D10

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09295 HOXD10; homrobox protein Hox-D10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597213.2 True 5687 mRNA 0.38 2 50146811 50153227

Neighbor

gene id symbol gene type direction distance location
hoxd11a hoxd11aa coding upstream 319 50144655 ~ 50146492 (+)
hoxd12a hoxd12 coding upstream 5807 50139213 ~ 50141004 (+)
hoxd13a hoxd13aa coding upstream 10214 50134695 ~ 50136597 (+)
LOC118944674 NA coding upstream 82977 50044718 ~ 50063834 (+)
LOC110504188 scrn3 coding upstream 272594 49871807 ~ 49874217 (+)
hoxd9a hoxd9aa coding downstream 2608 50155835 ~ 50158848 (+)
hoxd3a hoxd3 coding downstream 9051 50162278 ~ 50184327 (+)
hoxd4a hxd4a coding downstream 16374 50169601 ~ 50172397 (+)
LOC110505268 hoxd1aa coding downstream 33938 50187165 ~ 50188694 (+)
LOC110520134 ro32 coding downstream 162843 50316070 ~ 50321294 (+)
G268714 NA non-coding upstream 43755 50102779 ~ 50103056 (+)
G268604 NA non-coding upstream 61654 50084110 ~ 50085157 (+)
G268620 NA non-coding upstream 103268 50043333 ~ 50043543 (+)
G268618 NA non-coding upstream 110788 50035823 ~ 50036023 (+)
G268877 NA non-coding downstream 79244 50232471 ~ 50232690 (+)
G268956 NA non-coding downstream 139458 50292685 ~ 50292893 (+)
G268970 NA non-coding downstream 159285 50312512 ~ 50312731 (+)
G268938 NA non-coding downstream 168260 50321487 ~ 50322542 (+)
G268939 NA non-coding downstream 169542 50322769 ~ 50323146 (+)
G267529 NA other upstream 291309 49836617 ~ 49855502 (+)
G267381 NA other upstream 590973 49554498 ~ 49555838 (+)
G267358 NA other upstream 634336 49510803 ~ 49512475 (+)
LOC110520046 LOC106586167 other upstream 3314567 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 3962007 46184134 ~ 46184804 (+)
LOC110520146 ino80d other downstream 449075 50601983 ~ 50618761 (+)
G269291 rap2a other downstream 745362 50898589 ~ 50900277 (+)
LOC110520169 il1rl1 other downstream 1420753 51573980 ~ 51582567 (+)
acvr2aa LOC106586327 other downstream 3013725 53124656 ~ 53172428 (+)

Expression


Co-expression Network