hoxd9a (hoxd9aa)


Basic Information

Item Value
gene id hoxd9a
gene name hoxd9aa
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50155835 ~ 50158848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597214.2
AACCAATCCCTGAAGATTAAGCCAGCAAAAATACTATGATTGTTCAGAGGGAAGGTTTCCGTAACAGTGTAACCTTTTATATGACTACGAAGGGATCCAAAAATGTCGACCAGTAGCACTCTAAGTAACTATTATGTGGACTCTATAATGGGGCATGAAGTGGAGGATGTGTACGGGGCGCGTTTTATCCAGGGTCCGCACACTACGACCTCAAGGCCATCAGGTGTTGGGGACAATGCAGATTTTTCCTCCTGCAGTTTTGCACCCAAGTCAGCCGTTTTCCCAGCGTCTTGGTCCTCTGTTCACACGCAGTCCACTGCCGCAGTGTCAGGGATTTACCATCCTTACGTCCACCAGTCCCATCTCTCCGCAGCAGACAGCAGATATGTTCGGTCCTGGATAGACCCAATTTCTAACGTTTCTTTCTCCGGCTTTCACTCTAACAGTCGGCATTATGGAACCAAGCCCGAAAGTTTACCACCGAAAAGGACTGAGAGTGCCACTTTTGAGACAGAGACTCCGGTGGTCGACCCTGGCCCTGATTACGCATGTGGAGTATCCGAATGCCCAGAAAAAGAGAGCGTTGGCAGTGATATGTCGAGTCACAGCGAGCCTAAAgaagagaaacaacaacaacaacttgaCCCAAaCAACCCTGCAGCAAACTGGATTCATGCACGTTCAACAAGGAAGAAGCGATGTCCATACACGAAATATCAGACACTAGAACTGGAAAAAGAATTCCTCTTCAACATGTATTTGACACGAGATCGACGATACGAAGTTGCTCGAATTCTCAATTTAACTGAAAGGCAGGTCAAAATCTGGTTCCAGAACAGAAGAATGAAAATGaaaaagatgaacagagagagaggcagtaagGATCACTTATAACTAGACTGGGTGTAGTCCCTCGCCTTTTGATGTATCATATTGTTGTGATTACTTAGAATAAAAGGTTGGTTGGAGCTTAAGCTATGCATTTTTGTGTTGATGTATCAAATGGAAAGGTTGACTCAACATGCCCGGAAATACGCTCTTTCTTTTTTGTTTTAATCAAAGTAAATGTTGAGTCTTAAACGAATTACTCTATTGATTAACCCGAGCTCGAGTATTTATGCCCAAAATGAGACCAGGGAATAATATGCTTGCGTATATAGTTTTCTTAGTCGTGTAGCCTTTTAGAAAAAAAATCGAATGTTTTAAGAAGATGCATTTATGCTTATATTTCGGCGAAAGAATCCTCACGCAAATTGGAAATGATTTAACAAAGTAGAGGCCAACTGAGTATGTTTGTCCTACTCTAGGGCAAGAATTTAAAACGAAAGGGTCATGTTTTTGAGTATTTATGATATTGTCATCGTGTTTTTTCTGAGGTTGCTAGTTTTGAAAAAAGACAAGAAAGCTATTGGGCGTAGCCTTAATCATACATAGGCTAATATTCCTGCATTTTTACAATCCAATTCCGGCTGTATTTAACCGTTAAGTTGTTCTTAAATCACCTTTTCTGCTCAGTGGTTTTGCAGTGGTTGTCCCTATATAGACATGCTTGTTATTAGCCTAGCTACATTGtatttgaatatatatatataatatatatgtatatatttcaatttgaGATGCATTGCTGTATATAGTTATTCATGACGCTCTGAACACCAATTCAACAACGTGTATTAGCCGACTCTTAATATAAAGCTATGGGCTAGTGTAGGCCCCATCGCATCAATGCAGTACTTCGTAAGAATTGAGAGGGAGGACTAATAACGCCTTATTGCAAACATAATTAGATGGGTTGATGAGGGGCAACGTAGGGTTAATGATAACGTTTCTTTCACTTAAATACATTCATTTTGGTTAATCTGTATGAGCCTGGAGATTCAATGATTGGACATTTCGTTGTCTTTAAAAAACAATGTTTAAGGTCAGCAGAATGAAACATCTAAAAGGTGCCACTTGGTGTAGTGAACTACCATTTCAGGATTGTTTTCCTAGTATGAATTTGGCTTACAAGGTGGTTGGACTTCACTTGAAAAGTAGGAGAATGAACATGGTTTAAAAATACTAGTAATAAAGAATTTATGATTGGGAGAGGTGTTGCACGGATTTCCAATTTATTGTCCAACCTGTACGTATAATTGCTTTAAAGCAGGAAGAAACGTGGTCCAATAAACCCATATAGATGGCTAGACGTCTGGTCTAAATGAGTTTATGAGCCAGGGCAATAATTGCACTCTCCTTTGAAACACTCTTACTTGGGGTGTTTGAGTCTGTTGCTGACTAACAGAAATGCAGGCATTTTTTTTTCTACAGGGTGTCTGGTCGATAAATTGTCTGTCTTCGTGACTGAGAGGAAATCAGACCCCCTAATGGATAGAAAGTCACGTTTATTCATCAACTGCATTTCCTATTGAGAGGGCAAAACTTCACTTTGACTGCTGCATAGAAGGCCGTTTACAGCGGTGGATCTATTGGCACTGCAAGGGTGGATTTAGACCCTGTTTCTGAAATTCCATGAAATGTCACATGTAATTACTGTtctgtgtgtaaaaaaaaaaaagccctgCGTTTTATGTGAAAAAAACGTACATTGTTTATCAGGGGGTGTTGAAACATCTGAGAATACAGTTGGATTTTGATGCATAATTTGTAATCGCTCTGGTTACTTTGATGAAAATAAATGATGATGATTGACACATTAATTCCCCCTA

Function

NR:

description
homeobox protein Hox-D9a-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09300 ABDB; homeobox protein abdominal-B and related proteins

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597214.2 True 2711 mRNA 0.40 2 50155835 50158848

Neighbor

gene id symbol gene type direction distance location
hoxd10a hoxd10 coding upstream 2608 50146811 ~ 50153227 (+)
hoxd11a hoxd11aa coding upstream 9343 50144655 ~ 50146492 (+)
hoxd12a hoxd12 coding upstream 14831 50139213 ~ 50141004 (+)
hoxd13a hoxd13aa coding upstream 19238 50134695 ~ 50136597 (+)
LOC118944674 NA coding upstream 92001 50044718 ~ 50063834 (+)
hoxd3a hoxd3 coding downstream 3430 50162278 ~ 50184327 (+)
hoxd4a hxd4a coding downstream 10753 50169601 ~ 50172397 (+)
LOC110505268 hoxd1aa coding downstream 28317 50187165 ~ 50188694 (+)
LOC110520134 ro32 coding downstream 157222 50316070 ~ 50321294 (+)
LOC110520136 NA coding downstream 175452 50334300 ~ 50336340 (+)
G268714 NA non-coding upstream 52779 50102779 ~ 50103056 (+)
G268604 NA non-coding upstream 70678 50084110 ~ 50085157 (+)
G268620 NA non-coding upstream 112292 50043333 ~ 50043543 (+)
G268618 NA non-coding upstream 119812 50035823 ~ 50036023 (+)
G268877 NA non-coding downstream 73623 50232471 ~ 50232690 (+)
G268956 NA non-coding downstream 133837 50292685 ~ 50292893 (+)
G268970 NA non-coding downstream 153664 50312512 ~ 50312731 (+)
G268938 NA non-coding downstream 162639 50321487 ~ 50322542 (+)
G268939 NA non-coding downstream 163921 50322769 ~ 50323146 (+)
G267529 NA other upstream 300333 49836617 ~ 49855502 (+)
G267381 NA other upstream 599997 49554498 ~ 49555838 (+)
G267358 NA other upstream 643360 49510803 ~ 49512475 (+)
LOC110520046 LOC106586167 other upstream 3323591 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 3971031 46184134 ~ 46184804 (+)
LOC110520146 ino80d other downstream 443454 50601983 ~ 50618761 (+)
G269291 rap2a other downstream 739741 50898589 ~ 50900277 (+)
LOC110520169 il1rl1 other downstream 1415132 51573980 ~ 51582567 (+)
acvr2aa LOC106586327 other downstream 3008104 53124656 ~ 53172428 (+)

Expression


Co-expression Network