hoxd4a (hxd4a)


Basic Information

Item Value
gene id hoxd4a
gene name hxd4a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50169601 ~ 50172397 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597220.2
ACTTCGATTTACTTTACTGCTTTTATATCATTTCTAATCATAACTATTTATAACATTGTATGATGGAGTGCACATCGTTTGATTGCTGGGTTGTTCCAGCTATTGTGTCTAATGGTTGTTTAAAatgatatttatatatattctattgagtAGAATCTGTTCTAATAGTGAAAGTAAATGTTCGAGTTATATGCTCTTTCAGTGTCACTTGTCATTTCATTTGTTGATTTACGTTGTTATAAAGACATCGTCCCAGTCATGCTCAGGAGAAGCCTTTTTACACGAGTCACTTTTTGGCCTGTTCACGTATCATTACAGCCAAACAGTCCTTTTCGTTTTGATAGTGAACAAAAAGtaacttgccataacaaaagttATAGGAGACTGAAATCTAAACAGATTTTAACATGGCATCAAAGTAATGCATTTTTTTCTTACGGTTTCATACGTTTTAACATTTCAATCATTGAATTATTGACTGTTTGGCATTGGTTGGTTGCCACGAGGCTCTTTCAATAGTTTTGAAAGGGATAGGGTAGATGAAATGATGAGATTCTTGTAACTTTTGGATGACCCCTTCTTGACAAAGACAGTCCCCATCAATTGTCCCCAGGCTTTATTCCCCTTTTTTTGTGCCAGGGGGACGTTTTgtatcttttgtttgtttatctgtcAGACTCACTGGCCTTAGTTTGATTTAGTATTGTAGAACAATAAGCATATTAACCATATTATTACACAAAACCATCTAAATGTCCATCTATACCCAAactttgtatttaatccattcaGATTATTTCCATTGACTGTTAGGGATGACCACAATTGATATTAAACTGTTGACATTAGGTACATAcaattttacattttatttttcagtATAGCGAGTACATTGCCAATCCTGCATTGGAACTGgttaaatatttgttttcattCAAAATAATTtcggtgttttttttttttaagtcagtgGAAATTGCTGCTGTAGGTGTGCAGTGTATACCCGTTAATGAACTAGCTTTACCTCCATTGGCCAATCTGGTCACATGGTTCCCTAACTTTATTCAGTTGACAGCAAGTAGGAGGGCTTTATGGAGGGTGGAAAAAAAGACAACTCGAGAAAAATTTGTATTTTCTACCTTCAGAAATTAATGACCATGAGTTCGTTTATGGTGGACTCTAAGTATGTGGACCCAAAATTTCCTCCTTGTGAGGAATATTCGCAAAATAGCTATATACCTGACCAGGGGACAGACTACTACGGTCCAGCGCAGGACCCAGGTTTCCAGCATCCAGGAATCTATCCACGGTCAAACTACACTGAGCAACCCTTCAGTTGTACCACTGTGCAGGGTTCTACAGTGCAGCCGCGGGGTCATGTGCATGAGCGAGCCAGCCACCCTAGCCCTTTCACTGCACAGACCGAGCCGTGTCCCCCGGTCCAAGTGACTGGCCCCCGGACTTGTGGACAGCAACAAAACACAAAGAACCAACATGGGATACAAGCCAAGCAGCCTACAGTAGTTTACCCCTGGATGAAGAAACACCACGTTACTACGGTAAACCCGGACTACACAGGACCTGAACCGAAACGGTCTCGGACAGCTTATACAAGACAGCAGGTTTTGGAACTGGAAAAGGAGTTTCATTTTAACAGGTATCTGACCAGGCGGCGTCGCATAGAGATTGCCCATACACTCGTTCTCTCCGAGCGTCAGATCAAAATCTGGTTTCAAAACAGAAGAATGAAATGGAAAAAAGACCACAAACTACCGAACACAAAGGGAAGATCTGCATCGGCTTCCAGCCAACATTTACAAAGTATTCAGAAGGATAACCAGACTGATATCACAACTTTATGAATATTGTGGGAAATTTTGAATCTTACATGAACTGTAGGCCTATAAAAACTATTTCCCATTTGACTTTGCATGATCTCAAACATGGCATTTTCGTCATAGGCAGTTACATTCAGAAGGACCCTCGATGTGTGTTGGCTCGCTGAATTGAGTCAACTTCCAACATTGTAACTGATAGGTGCTCAGAAGATACGAGTGCGTCACTACATGCTTCACATGCTTCAAAGAGGTTGCAGTAGATCGAACGAGAACTTTCGCTTTCGGACGAAAGCCTGTTAAAGAGGTTTTCATATGGTAGGCCTACTCTTCTTGCTTGCTATGGTTCTCTTTCCACCACACAAGTCAGAGTACTGCCTGAACATTTATATCTTTATTTAAAAGGGGGAAAAAACTTACAATTATGTGAAACTTTTGTACACGTTAATAGGAAATTGTCTTGTGATGAAATCAAGCTTCTAAAAAGAACCATATTTGATTCATATATTGCAAAAAATAAAATGGCCATTGCACAC

Function

NR:

description
homeobox protein Hox-D4a-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09304 HOX_4; homeobox protein HoxA/B/C/D4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597220.2 True 2371 mRNA 0.39 2 50169601 50172397

Neighbor

gene id symbol gene type direction distance location
hoxd9a hoxd9aa coding upstream 10753 50155835 ~ 50158848 (+)
hoxd10a hoxd10 coding upstream 16374 50146811 ~ 50153227 (+)
hoxd11a hoxd11aa coding upstream 23109 50144655 ~ 50146492 (+)
hoxd12a hoxd12 coding upstream 28597 50139213 ~ 50141004 (+)
hoxd13a hoxd13aa coding upstream 33004 50134695 ~ 50136597 (+)
LOC110505268 hoxd1aa coding downstream 14768 50187165 ~ 50188694 (+)
LOC110520134 ro32 coding downstream 143673 50316070 ~ 50321294 (+)
LOC110520136 NA coding downstream 161903 50334300 ~ 50336340 (+)
agps LOC106586249 coding downstream 165770 50338167 ~ 50377090 (+)
osbpl6 LOC106586252 coding downstream 282642 50455039 ~ 50519865 (+)
G268714 NA non-coding upstream 66545 50102779 ~ 50103056 (+)
G268604 NA non-coding upstream 84444 50084110 ~ 50085157 (+)
G268620 NA non-coding upstream 126058 50043333 ~ 50043543 (+)
G268618 NA non-coding upstream 133578 50035823 ~ 50036023 (+)
G268877 NA non-coding downstream 60074 50232471 ~ 50232690 (+)
G268956 NA non-coding downstream 120288 50292685 ~ 50292893 (+)
G268970 NA non-coding downstream 140115 50312512 ~ 50312731 (+)
G268938 NA non-coding downstream 149090 50321487 ~ 50322542 (+)
G268939 NA non-coding downstream 150372 50322769 ~ 50323146 (+)
G267529 NA other upstream 314099 49836617 ~ 49855502 (+)
G267381 NA other upstream 613763 49554498 ~ 49555838 (+)
G267358 NA other upstream 657126 49510803 ~ 49512475 (+)
LOC110520046 LOC106586167 other upstream 3337357 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 3984797 46184134 ~ 46184804 (+)
LOC110520146 ino80d other downstream 429905 50601983 ~ 50618761 (+)
G269291 rap2a other downstream 726192 50898589 ~ 50900277 (+)
LOC110520169 il1rl1 other downstream 1401583 51573980 ~ 51582567 (+)
acvr2aa LOC106586327 other downstream 2994555 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 other downstream 3049030 53174264 ~ 53235027 (+)

Expression


Co-expression Network