LOC110520139 (LOC106586251)


Basic Information

Item Value
gene id LOC110520139
gene name LOC106586251
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50440201 ~ 50442930 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597228.2
GATGTGTGACTGACCAATAAGGGACTGACGTTTTAAGCTACATATTTTTTCAGGGAAGGAAAGAGACTTGCTTGCATTTGTTACATTACGCTACTGGCGTGGAGACAGCTCAAGGTGAACGAAACTTTTAAGGAATACATACATTGAACAGGAAGCATGGGTGATATTGCTAAGGGAAAGAAGGCATTTGTCCAGAAGTGTGCCCAGTGTCATACTGTTGAAAATGGAGGAAAGCACAAGGTTGGTCCAAACCTCTGGGGTCTGTTTGGACGCAAGACTGGACAAGCTGAAGGCTATTCCTACACAGATGCCAACAAATCCAAAGGCATTGTCTGGGAAACCGATACCCTCATGACGTACTTGGAGAACCCCAAGAAATACATTCCTGGAACAAAGATGATATTTGCTGGCATCAAGAAGAAGGGCGAGCGTGCAGATCTTATAGCATATTTGAAGTCGGCAACTTCGTAGACCACTGTCTACGCTTTGTTCAATGTATAGACTTCCCTTTCTGTATCTTTATATAAATATCATCAACTGTTCAGCGGAGAAGGGGGGTGGCTCTTTCAAGAAGCTAAGACTAATTCTTAGCATTTTAACAATTTATTTGAATAGCCTGCTTGACATACCTGCTGGGACTCAATGGTGTTTGCATGATCAGTTGCCATATTTCACAGCTGTACCTCCATTTAGATGGTGTAATTTATATCCCTTGGTCTAACAGGCTCTAGTACGTATACATAAATTATTGATCCATAGACTGTAAGTATTCCATAATTTATTGGGTCAAAGCAGTGTAATatttgtttcacaaaaaaaagTTTCAACTAATTGTATCGGTAGTGGTTTTAATACTTGCTAATGCAAACCCTCAATCAGATTTGGAATAGTCTCTAATTTTAAAGGGTTGTCTTGAAAGTAACGTCTACTACAGACCATGGTAATGTCTTATGTAGCCAATACCTCATGATCTGGTTCTATTTGAGTTAATTGAATAAATTACATGCTAAACAATTA
>TU306341
GAAAGAGACTTGCTTGCATTTGTTACATTACGCTACTGGCGTGGAGACAGCTCAAGGTGAACGAAACTTTTAAGGAATACATACATTGAACAGGAAGCATGGGTGATATTGCTAAGGGAAAGAAGGCATTTGTCCAGAAGTGTGCCCAGTGTCATACTGTTGAAAATGGAGGAAAGCACAAGGTTGGTCCAAACCTCTGGGGTCTGTTTGGACGCAAGACTGGACAAGCTGAAGGCTATTCCTACACAGATGCCAACAAATCCAAAGGCATTGTCTGGGAAACCGATACCCTCATGACGTACTTGGAGAACCCCAAGAAATACATTCCTGGAACAAAGATGATATTTGCTGGCATCAAGAAGAAGGGCGAGCGTGCAGATCTTATAGCATATTTGAAGTCGGCAACTTCGTAGACCACTGTCTACGCTTTGTTCAATGTATAGACTTCCCTTTCTGTATCTTTATATAAATATCATCAACTGTTCAGCGGAGAAGGGGGGTGGCTCTTTCAAGAAGCTAAGACTAATTCTTAGCATTTTAACAATTTATTTGAATAGCCTGCTTGACATACCTGCTGGGACTCAATGGTGTTTGCATGATCAGTTGCCATATTTCACAGCTGTACCTCCATTTAGATGGTGTAATTTATATCCCTTGGTCTAACAGGCTCTAGTACGTATACATAAATTATTGATCCATAGACTGTAAGTATTCCATAATTTATTGGGTCAAAGCAGTGTAATatttgtttcacaaaaaaaagTTTCAACTAATTGTATCGGTAGTGGTTTTAATACTTGCTAATGCAAACCCTCAATCAGATTTGGAATAGTCTCTAATTTTAAAGGGTTGTCTTGAAAGTAACGTCTACTACAGACCATGGTAATGTCTTATGTAGCCAATACCTCATGATCTGGTTCTATTTGAGTTAATTGAATAAATTACATGCTAAACA

Function

NR:

description
cytochrome c

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597228.2 False 1017 mRNA 0.39 3 50440201 50442930
TU306341 True 955 TUCP 0.39 3 50440205 50442872

Neighbor

gene id symbol gene type direction distance location
pde11a pde11a coding downstream 4127 50378400 ~ 50436074 (-)
nfe2l2a LOC106586247 coding downstream 107295 50325109 ~ 50332906 (-)
evx2 evx2a coding downstream 315581 50119669 ~ 50124620 (-)
lnpa LOC100194569 coding downstream 340504 50084100 ~ 50099697 (-)
LOC110520125 atp5g3 coding downstream 458331 49979196 ~ 49981870 (-)
prkra LOC106586253 coding upstream 77335 50520265 ~ 50525331 (-)
LOC110520142 LOC106586254 coding upstream 91149 50534079 ~ 50542288 (-)
LOC110505276 NA coding upstream 100056 50542986 ~ 50543432 (-)
LOC110520143 LOC106586256 coding upstream 103136 50546066 ~ 50585895 (-)
LOC110520149 stk24 coding upstream 176091 50619021 ~ 50636522 (-)
G269687 NA non-coding downstream 21317 50418537 ~ 50418884 (-)
G269680 NA non-coding downstream 29303 50410694 ~ 50410898 (-)
G269678 NA non-coding downstream 30396 50409472 ~ 50409805 (-)
G269668 NA non-coding downstream 46592 50393291 ~ 50393609 (-)
G269761 NA non-coding upstream 88024 50530954 ~ 50531200 (-)
G269762 NA non-coding upstream 88341 50531271 ~ 50531890 (-)
G269779 ino80d non-coding upstream 158048 50600978 ~ 50605536 (-)
G269817 NA non-coding upstream 259316 50702246 ~ 50702996 (-)
G269865 NA non-coding upstream 335739 50778669 ~ 50778893 (-)
LOC110520121 LOC106581751 other downstream 538663 49895327 ~ 49901575 (-)
LOC110520119 NA other downstream 568556 49867187 ~ 49871681 (-)
LOC110520112 LOC106586230 other downstream 872727 49563841 ~ 49608114 (-)
LOC118944672 NA other downstream 937230 49494001 ~ 49503025 (-)
G268310 NA other downstream 944398 49495477 ~ 49495803 (-)
LOC110520160 LOC106586095 other upstream 685510 51126600 ~ 51130404 (-)
fgf9 NA other upstream 1030394 51471899 ~ 51478510 (-)
il1rl1 il1rl1 other upstream 1154469 51596933 ~ 51619476 (-)
LOC110520182 NA other upstream 2265253 52693956 ~ 52708816 (-)
G272713 LOC106586324 other upstream 2806996 53249926 ~ 53251084 (-)

Expression


Co-expression Network