prkra (LOC106586253)


Basic Information

Item Value
gene id prkra
gene name LOC106586253
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50520265 ~ 50525331 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597239.2
GTACTTGTTTAATGTTGCTGACGAGACGCTGATTCAAATCGGCAACCCCCCCCCATCCAGCTAATTTCGCCGGTTTCTGCAGGAGATAAATTACATTTGTACAACAATATATTAACGTTACGCACGAAATTGTTTACTAACGTTAGCCATGTCTCAAGACGGATTTCAACCTACACTAATAAGGACCACGCACAATAACAACACGAGCATGAGTATTCAACAAACTCAGGCACCGTGCCCTGGTAAAACGCCAATACAAATTCTGCATGAATACGGAACCAAAATTGGTAACCTTCCCGTGTACGTGATGGAAAAGGCTGAAGGGGAGGCACACCAACCCAGTTTCATCTTTAACGTGACAATAGGCGATGTGTCCTGCACAGGTCAAGGATCCAGTAAAAAAGCTGCCAAACACCAGGCCGCTGAGTCTGCCCTGAACCTTCTGGAAATAGATGCTGGGACACCCCTTCACATAAAGACGGAGAGTAACGGCATCCCAGCAGAGCCCAACGATCAACCCAACTCAGTGGGGATTCTGCAGGAGCTGGCACTGCAGCGGGGATGGCGCCTCCCTGAATACACTGTTCTCATGGAGGCGGGCCCACCTCACAAGAGAGAGTTCACTGTTACCTGCAGAATGGAGTCACTGACAGAGACGGCAATGGGAAATTCCAAGAAGGTGGCCAAAAAGGCAGCTGCGGAGAAGATGGTGGCTAAACTTCAGAATCTGTCTGGCTGTCCTGAAATCACATGGACCCCGAAGCCCAGTGTCCGTCTGGAGAACTTGCGTAACTCCTCTGCAGAGAAGATGTCTCTCCTGAGAAGGAACCCACTCAGCATTCCCAACACCGActatatccagatgatgctggaGCTGTCCAATGAGCAGGGCTTCGAAGTCACATACTTTGACATTGATGAGCTGACTGTGAACGGGCAGTACCAGTGCCTGGCAGAGCTGTCCACCTCACCTGTCACCGTATGCCACGGCACGGGCATCTCCTGCGGCAACGCACACAATGACGCTGCACACAGCGCACTTCAGTACATCAAGATCATGGCTTCTATCAAATGAACGACCCTAGTAAACGTCACCACTGTTTCACCTGCAGAACATATTTAAGAAATTGAGGAGGGAAAAAAAACCCAATTTCATCACAACTGAAACATGTAGCTATCTTCCATCTACCATTATGTTTTCACTCTTTACCCGTGTTTACTCCATATGAAATTGGTGGATATTGAAGGCAGTATCAATAGGAATCATGCGATTCAGACAAAACAATCCAGTTGTTGTTTTTATAACAGTGACAGTCAACACTGTTCATCACCTATGGTTTCTGTCAGATATTGAAGTTACTTTGAGAAGATCAGCGCAAAAAAACCATCTAATCCCATGGGGGTTATTATGTACAGTAGAAAAACAAGGACAAGGGAATAGAATGGACACTAGTCTTGGAACGGCTTTGCTGCCAAAATGTCGACATATCGAAAATAGTCTCCAATTTATCCCAATCATTTATTGAATGATACACAATTTAAAACTGTATTGCACTGAACAAAATTAGTGATGGAAACTGGTTTGGACTCGTTTACCTTTAAGGTTATGAGAAAATAATGAATTTAACGTAATGTTATAGGTTCCCAAAATAATGAAGCCGATTGAAGGCCTATTGGATAAACTATGTAGGAACAAACACAATACATTCAcaatacattaatttcacattttgtATTTGGTTTGATCTTCTAAACGATCTCTGCTTTATTTAATTGGTTATTTCTCTCTGCCAAGATTCAATTACATGACGGAAATAATTTTCCATAGCAATATTAACCCCTATtttccaattggctcattaaaAAGAGTCCATTATCACTTTGTTTGATTTTAGAGAAAAGGTTTTGAGCTTTGGTTGGTTTAAGACCATattactgttttttttattttttatttggttTTATTCAGTCATAGGGAGAAGGACTGGTGTTTTTTGACTACCACCACATGTATTTACAAAGAACACTAATATTAAGCAGGTTTTTGTTTACAGTGACTTTATCTCCCAACAATTATCATTATAAACATCTGCTCAACTAGAAAGTTACATTTAGCTTGTTTAGGTGAAATTGTGCTGGATATAAAACCACATGTCTTTATTATGAACACATTTCTTTTTGTAAAATGTATCTTTTTTAAGTTAATGGTAGCAAGATGGCATTCTCGGAAACATCTGGACAACTCCTGACTTAGACTTCAAGACCAAGACTGCCATTATTGTCTCTTCATGCTACAAATGAGCAAGAGCCAATAATTGCAATCTTGGTAGCTTTGATGTTGATGACTAAGCAGGTAGTTGCCCTGTTGTGTATGGTGACGTCATCTTGCTCAGTCTGCCTGTAATGTTGTTGCTAGCCTAGTTATGTCAGCTGTATATGAAAGTcatgctgctgtgtgtgtttttgaagaTTTTGAGTTTGTGTCGGCCTTCACACCGAGTCTTGCGAAATGTTTTATGCCGATTACGGAGGATTTTCCACCCTGTCCTGAGTTAGTCACAGAGCCGAGGCTGGGCGGTTTAATCACATTTTCGTTTCCTTTTATCAAGGTGTATTGTAAATCGTCTCAATGTTTTGGCGGACTCATCCCAAGCGCGTGCTGTGTACCTgaccatattaatacatatttaTTACATGTGAAGTGTGACAGACATGTTAAATAAAGCTACCTGACATTGG

Function

NR:

description
interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597239.2 True 2739 mRNA 0.42 8 50520265 50525331

Neighbor

gene id symbol gene type direction distance location
LOC110520139 LOC106586251 coding downstream 77335 50440201 ~ 50442930 (-)
pde11a pde11a coding downstream 84191 50378400 ~ 50436074 (-)
nfe2l2a LOC106586247 coding downstream 187359 50325109 ~ 50332906 (-)
evx2 evx2a coding downstream 395645 50119669 ~ 50124620 (-)
lnpa LOC100194569 coding downstream 420568 50084100 ~ 50099697 (-)
LOC110520142 LOC106586254 coding upstream 8748 50534079 ~ 50542288 (-)
LOC110505276 NA coding upstream 17655 50542986 ~ 50543432 (-)
LOC110520143 LOC106586256 coding upstream 20735 50546066 ~ 50585895 (-)
LOC110520149 stk24 coding upstream 93690 50619021 ~ 50636522 (-)
slc15a1a LOC106586093 coding upstream 127302 50652633 ~ 50665607 (-)
G269687 NA non-coding downstream 101381 50418537 ~ 50418884 (-)
G269680 NA non-coding downstream 109367 50410694 ~ 50410898 (-)
G269678 NA non-coding downstream 110460 50409472 ~ 50409805 (-)
G269668 NA non-coding downstream 126656 50393291 ~ 50393609 (-)
G269667 NA non-coding downstream 127245 50392250 ~ 50393020 (-)
G269761 NA non-coding upstream 5623 50530954 ~ 50531200 (-)
G269762 NA non-coding upstream 5940 50531271 ~ 50531890 (-)
G269779 ino80d non-coding upstream 75647 50600978 ~ 50605536 (-)
G269817 NA non-coding upstream 176915 50702246 ~ 50702996 (-)
G269865 NA non-coding upstream 253338 50778669 ~ 50778893 (-)
LOC110520121 LOC106581751 other downstream 618727 49895327 ~ 49901575 (-)
LOC110520119 NA other downstream 648620 49867187 ~ 49871681 (-)
LOC110520112 LOC106586230 other downstream 952791 49563841 ~ 49608114 (-)
LOC118944672 NA other downstream 1017294 49494001 ~ 49503025 (-)
LOC110520160 LOC106586095 other upstream 603109 51126600 ~ 51130404 (-)
fgf9 NA other upstream 947993 51471899 ~ 51478510 (-)
il1rl1 il1rl1 other upstream 1072068 51596933 ~ 51619476 (-)
LOC110520182 NA other upstream 2182852 52693956 ~ 52708816 (-)
G272713 LOC106586324 other upstream 2724595 53249926 ~ 53251084 (-)

Expression


Co-expression Network