LOC110520142 (LOC106586254)


Basic Information

Item Value
gene id LOC110520142
gene name LOC106586254
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50534079 ~ 50542288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597241.2
GTTTGGACTTGAAATATCAGGACGCACATTTACACTTCGAACGCACTATTATTCCTAGCCGAGGAACGCTCAACTCCGTCCTTCAGCTATACTTTCACCAAACTTGTTCTTGGGAGATGGATTTCCAAAGGCTGCTGTTGCAAGTGGAACAAGCCCTGAGCAGTGAAGAAGTACAAGCACTTGCATTTCTTTGTACAGATTTACTGGGTAAAGACCTGAACTCAGTGACCACAGCTAGTAAACTCTTCTCTCTTCTGACGGACCAAGAACTGTTATCCCCTGATCAACCTTGCTTGCTTGCTGACCTACTACTCACCATCCAGCGGCACAGCTTGATGCGAGGCCTTGGCCTCAACAACCAGCTACCAACAACCAGTAGACACATCTCTCCTTATAGAAAGATGCTGTATGACCTGTCAGAGAACATCACTCGAGATGAGTTGCGGGAGATCAAGTTCTTGTTGAGTAATGAACTCCCTCGTAGAAAACTGGAGGACAACCTGACAACCTTGCAATTATTCCTGGAAATGGAGAAAATGGATATTTTGAGCATCGTAAAACTAAACACTCTTGAAAGCATTATTGAAAGTGTCTGCCCCGTGTTGAAAAAAACGATCAAAAAGTACAAGACACAGAATTCCTTATCTGGACCAGGAACTCAAGAGACAGGGGTGGGACAGTTAAGACCAACATCTGTGTCTGAAGCTCATGCAGGAATCCAGGCTGCCTCCATGCTTCCAAAGAGGCCTGTCTCTTGTGAACTATCAGTTGAACCGTATGGCCATTCTGACGAGACTCTCACTCCCCCCACTTACTTCTCGAGTTCACAGCCTTCAGCCAAGGTATCCTCTCTGAATCGATCTGACACCTCTCTGGATGTTCGGAGAGTCTCATATTCGATGGATGCAGGACTTTCACATGGGCTGAGTCTCCTAAGTACCAATGGGGACAACTGTGCTGCTCCCATTAAAGAGTATAATCATGTTTCATCCACATCCTCATGTGGAGACAATAAGAACTTTGGCCCAGCAGATCCTCAGAGAGGAAACACCAAAAGAGAGGAACTGGGAGAATATTCTATGACAGGAAAAAAGAGAGGTTTCTGTCTGATCATTAACAACTGCGACTTTAGAAATTCCCCTCTACCGTTAAAAGAAAGAGCGGGAACACACATTGACAAAAAGAGTTTGGTGAGTGTGTTTAAGTGGCTGGGCTTTGAGACACAGACTGAGCCAGACTGCAGTCGGGAGAAGATACTGTCTCTACTTGCGGAGCTGCGCAACCGGGATCACAGCCAGATGGACTGCCTGGTGTGCTGCGTTCTGAGCCACGGCCTAGAGGGAGGTGTTTACGGGGTGGACGGGCTGGAGGTCAGTGTCAGGGAGCTCACAGAGCCCTTCTCTGGACTGGAGTGCAGCTCACTGAGGGACAAGCCCAAGCTGTTCTTCATCCAGGCCTGTCAGGGCAACAAGGAACAAAAGCAAGTGTTCATCCAGTCTGATGGCCCAGCACCAAGCTCTACTACCTCCAGCTCTATCTGCACTGATGCAGTGGTACACAGAGACTCCATTCCCACTGATGCTGACTTCCTTCTGGGCATGGCCACTGTCCCTCACTTTGCCTCTTTTAGAGACAAGAGGCAGGGCACTTGGTTCATCCAGTCGTTGTGCCAGAACCTCATCAACTTGGTGCCCAGtggGTATGACTTGCTGTCCATCCTGACCAAGGTGAATGATGATGTCAGCAGAAAGACAAATGGCATTAAGAAGCAGATGCCCCAGCCTGCATACTCGCTCAGAAAGAGGGTGGTCTTTCCCATTCCCAAAGAACCACCTCCCAGACTATGTGAGCCACAAGCATTGGCTTGAGAACACTAGAGCAGATTTCTTTAATGGTCGTCACCTTTCCCATCTATTCAGGGTACTGATTCAGAAACTAGTTGAGTGGACTCTCACCGACGATATTAATCCATGGGGAAAAGACTAGTACTTGAATAGCACTGCCCTAGACTGAGAGACTGTCTCCACACTCCTGTCTACACTGCACACCTCAGGGATCCCTCAAGTATAAACTGCTGTGTTTTTCCAAAACTGAATGTTAACTGTTTTTTACACCTTATATAAAAAATGAAATTCAGTATAAATATATCCAAAGAACTGTAAATAGAACGTTTCAGGAATTTTTTTAAAGGGTGTTTTTAAATGTTGTAGAGAAAAAGCAAGAACAACCGAAGAGCACTTAATATGCAACGTTTTCCACATGTTTTTTTCTAAATGGTCAATTTCTTACTCCCTTGCACATTGGCTTCCTAAATGAATACAAAATAACATTTTCAATCAATATAGAtaatgttgttgttgctgctgtttcAATACATCACAGTGTACTCCTTGACACCACATGTCATACAACACATTTAAGACAAATTCTATGATGGAAGAATAAAAAATATGGTCAAACATG
>XM_021597240.2
TTGGCGTGAGGAAAGCTCGAAGTACTGTACTGACTTCACGCCACTTGTAACGAAACCTCCCGGTACTTTCAAGGAAATAAAATGACTTGTAGGTGTTATCGGAAAGAAGACAGGATCTTTGGAAAAAATTGATATTCCTGTTGTTTATGTTACCTCTCCAAAAGTACAGGAGATGGATTTCCAAAGGCTGCTGTTGCAAGTGGAACAAGCCCTGAGCAGTGAAGAAGTACAAGCACTTGCATTTCTTTGTACAGATTTACTGGGTAAAGACCTGAACTCAGTGACCACAGCTAGTAAACTCTTCTCTCTTCTGACGGACCAAGAACTGTTATCCCCTGATCAACCTTGCTTGCTTGCTGACCTACTACTCACCATCCAGCGGCACAGCTTGATGCGAGGCCTTGGCCTCAACAACCAGCTACCAACAACCAGTAGACACATCTCTCCTTATAGAAAGATGCTGTATGACCTGTCAGAGAACATCACTCGAGATGAGTTGCGGGAGATCAAGTTCTTGTTGAGTAATGAACTCCCTCGTAGAAAACTGGAGGACAACCTGACAACCTTGCAATTATTCCTGGAAATGGAGAAAATGGATATTTTGAGCATCGTAAAACTAAACACTCTTGAAAGCATTATTGAAAGTGTCTGCCCCGTGTTGAAAAAAACGATCAAAAAGTACAAGACACAGAATTCCTTATCTGGACCAGGAACTCAAGAGACAGGGGTGGGACAGTTAAGACCAACATCTGTGTCTGAAGCTCATGCAGGAATCCAGGCTGCCTCCATGCTTCCAAAGAGGCCTGTCTCTTGTGAACTATCAGTTGAACCGTATGGCCATTCTGACGAGACTCTCACTCCCCCCACTTACTTCTCGAGTTCACAGCCTTCAGCCAAGGTATCCTCTCTGAATCGATCTGACACCTCTCTGGATGTTCGGAGAGTCTCATATTCGATGGATGCAGGACTTTCACATGGGCTGAGTCTCCTAAGTACCAATGGGGACAACTGTGCTGCTCCCATTAAAGAGTATAATCATGTTTCATCCACATCCTCATGTGGAGACAATAAGAACTTTGGCCCAGCAGATCCTCAGAGAGGAAACACCAAAAGAGAGGAACTGGGAGAATATTCTATGACAGGAAAAAAGAGAGGTTTCTGTCTGATCATTAACAACTGCGACTTTAGAAATTCCCCTCTACCGTTAAAAGAAAGAGCGGGAACACACATTGACAAAAAGAGTTTGGTGAGTGTGTTTAAGTGGCTGGGCTTTGAGACACAGACTGAGCCAGACTGCAGTCGGGAGAAGATACTGTCTCTACTTGCGGAGCTGCGCAACCGGGATCACAGCCAGATGGACTGCCTGGTGTGCTGCGTTCTGAGCCACGGCCTAGAGGGAGGTGTTTACGGGGTGGACGGGCTGGAGGTCAGTGTCAGGGAGCTCACAGAGCCCTTCTCTGGACTGGAGTGCAGCTCACTGAGGGACAAGCCCAAGCTGTTCTTCATCCAGGCCTGTCAGGGCAACAAGGAACAAAAGCAAGTGTTCATCCAGTCTGATGGCCCAGCACCAAGCTCTACTACCTCCAGCTCTATCTGCACTGATGCAGTGGTACACAGAGACTCCATTCCCACTGATGCTGACTTCCTTCTGGGCATGGCCACTGTCCCTCACTTTGCCTCTTTTAGAGACAAGAGGCAGGGCACTTGGTTCATCCAGTCGTTGTGCCAGAACCTCATCAACTTGGTGCCCAGtggGTATGACTTGCTGTCCATCCTGACCAAGGTGAATGATGATGTCAGCAGAAAGACAAATGGCATTAAGAAGCAGATGCCCCAGCCTGCATACTCGCTCAGAAAGAGGGTGGTCTTTCCCATTCCCAAAGAACCACCTCCCAGACTATGTGAGCCACAAGCATTGGCTTGAGAACACTAGAGCAGATTTCTTTAATGGTCGTCACCTTTCCCATCTATTCAGGGTACTGATTCAGAAACTAGTTGAGTGGACTCTCACCGACGATATTAATCCATGGGGAAAAGACTAGTACTTGAATAGCACTGCCCTAGACTGAGAGACTGTCTCCACACTCCTGTCTACACTGCACACCTCAGGGATCCCTCAAGTATAAACTGCTGTGTTTTTCCAAAACTGAATGTTAACTGTTTTTTACACCTTATATAAAAAATGAAATTCAGTATAAATATATCCAAAGAACTGTAAATAGAACGTTTCAGGAATTTTTTTAAAGGGTGTTTTTAAATGTTGTAGAGAAAAAGCAAGAACAACCGAAGAGCACTTAATATGCAACGTTTTCCACATGTTTTTTTCTAAATGGTCAATTTCTTACTCCCTTGCACATTGGCTTCCTAAATGAATACAAAATAACATTTTCAATCAATATAGAtaatgttgttgttgctgctgtttcAATACATCACAGTGTACTCCTTGACACCACATGTCATACAACACATTTAAGACAAATTCTATGATGGAAGAATAAAAAATATGGTCAAACATG
>XM_021597242.2
TTGGCGTGAGGAAAGCTCGAAGTACTGTACTGACTTCACGCCACTTGTAACGAAACCTCCCGGTACTTTCAAGGAAATAAAATGACTTGTAGGTGTTATCGGAAAGAAGACAGGATCTTTGGAAAAAATTGATATTCCTGTTGTTTATGTTACCTCTCCAAAAGTACAGATTTACTGGGTAAAGACCTGAACTCAGTGACCACAGCTAGTAAACTCTTCTCTCTTCTGACGGACCAAGAACTGTTATCCCCTGATCAACCTTGCTTGCTTGCTGACCTACTACTCACCATCCAGCGGCACAGCTTGATGCGAGGCCTTGGCCTCAACAACCAGCTACCAACAACCAGTAGACACATCTCTCCTTATAGAAAGATGCTGTATGACCTGTCAGAGAACATCACTCGAGATGAGTTGCGGGAGATCAAGTTCTTGTTGAGTAATGAACTCCCTCGTAGAAAACTGGAGGACAACCTGACAACCTTGCAATTATTCCTGGAAATGGAGAAAATGGATATTTTGAGCATCGTAAAACTAAACACTCTTGAAAGCATTATTGAAAGTGTCTGCCCCGTGTTGAAAAAAACGATCAAAAAGTACAAGACACAGAATTCCTTATCTGGACCAGGAACTCAAGAGACAGGGGTGGGACAGTTAAGACCAACATCTGTGTCTGAAGCTCATGCAGGAATCCAGGCTGCCTCCATGCTTCCAAAGAGGCCTGTCTCTTGTGAACTATCAGTTGAACCGTATGGCCATTCTGACGAGACTCTCACTCCCCCCACTTACTTCTCGAGTTCACAGCCTTCAGCCAAGGTATCCTCTCTGAATCGATCTGACACCTCTCTGGATGTTCGGAGAGTCTCATATTCGATGGATGCAGGACTTTCACATGGGCTGAGTCTCCTAAGTACCAATGGGGACAACTGTGCTGCTCCCATTAAAGAGTATAATCATGTTTCATCCACATCCTCATGTGGAGACAATAAGAACTTTGGCCCAGCAGATCCTCAGAGAGGAAACACCAAAAGAGAGGAACTGGGAGAATATTCTATGACAGGAAAAAAGAGAGGTTTCTGTCTGATCATTAACAACTGCGACTTTAGAAATTCCCCTCTACCGTTAAAAGAAAGAGCGGGAACACACATTGACAAAAAGAGTTTGGTGAGTGTGTTTAAGTGGCTGGGCTTTGAGACACAGACTGAGCCAGACTGCAGTCGGGAGAAGATACTGTCTCTACTTGCGGAGCTGCGCAACCGGGATCACAGCCAGATGGACTGCCTGGTGTGCTGCGTTCTGAGCCACGGCCTAGAGGGAGGTGTTTACGGGGTGGACGGGCTGGAGGTCAGTGTCAGGGAGCTCACAGAGCCCTTCTCTGGACTGGAGTGCAGCTCACTGAGGGACAAGCCCAAGCTGTTCTTCATCCAGGCCTGTCAGGGCAACAAGGAACAAAAGCAAGTGTTCATCCAGTCTGATGGCCCAGCACCAAGCTCTACTACCTCCAGCTCTATCTGCACTGATGCAGTGGTACACAGAGACTCCATTCCCACTGATGCTGACTTCCTTCTGGGCATGGCCACTGTCCCTCACTTTGCCTCTTTTAGAGACAAGAGGCAGGGCACTTGGTTCATCCAGTCGTTGTGCCAGAACCTCATCAACTTGGTGCCCAGtggGTATGACTTGCTGTCCATCCTGACCAAGGTGAATGATGATGTCAGCAGAAAGACAAATGGCATTAAGAAGCAGATGCCCCAGCCTGCATACTCGCTCAGAAAGAGGGTGGTCTTTCCCATTCCCAAAGAACCACCTCCCAGACTATGTGAGCCACAAGCATTGGCTTGAGAACACTAGAGCAGATTTCTTTAATGGTCGTCACCTTTCCCATCTATTCAGGGTACTGATTCAGAAACTAGTTGAGTGGACTCTCACCGACGATATTAATCCATGGGGAAAAGACTAGTACTTGAATAGCACTGCCCTAGACTGAGAGACTGTCTCCACACTCCTGTCTACACTGCACACCTCAGGGATCCCTCAAGTATAAACTGCTGTGTTTTTCCAAAACTGAATGTTAACTGTTTTTTACACCTTATATAAAAAATGAAATTCAGTATAAATATATCCAAAGAACTGTAAATAGAACGTTTCAGGAATTTTTTTAAAGGGTGTTTTTAAATGTTGTAGAGAAAAAGCAAGAACAACCGAAGAGCACTTAATATGCAACGTTTTCCACATGTTTTTTTCTAAATGGTCAATTTCTTACTCCCTTGCACATTGGCTTCCTAAATGAATACAAAATAACATTTTCAATCAATATAGAtaatgttgttgttgctgctgtttcAATACATCACAGTGTACTCCTTGACACCACATGTCATACAACACATTTAAGACAAATTCTATGATGGAAGAATAAAAAATATGGTCAAACATG
>XM_021597243.2
TTGGCGTGAGGAAAGCTCGAAGTACTGTACTGACTTCACGCCACTTGTAACGAAACCTCCCGGTACTTTCAAGGAAATAAAATGACTTGTAGGTGTTATCGGAAAGAAGACAGGATCTTTGGAAAAAATTGATATTCCTGTTGTTTATGTTACCTCTCCAAAAGTACAGAAAGATGCTGTATGACCTGTCAGAGAACATCACTCGAGATGAGTTGCGGGAGATCAAGTTCTTGTTGAGTAATGAACTCCCTCGTAGAAAACTGGAGGACAACCTGACAACCTTGCAATTATTCCTGGAAATGGAGAAAATGGATATTTTGAGCATCGTAAAACTAAACACTCTTGAAAGCATTATTGAAAGTGTCTGCCCCGTGTTGAAAAAAACGATCAAAAAGTACAAGACACAGAATTCCTTATCTGGACCAGGAACTCAAGAGACAGGGGTGGGACAGTTAAGACCAACATCTGTGTCTGAAGCTCATGCAGGAATCCAGGCTGCCTCCATGCTTCCAAAGAGGCCTGTCTCTTGTGAACTATCAGTTGAACCGTATGGCCATTCTGACGAGACTCTCACTCCCCCCACTTACTTCTCGAGTTCACAGCCTTCAGCCAAGGTATCCTCTCTGAATCGATCTGACACCTCTCTGGATGTTCGGAGAGTCTCATATTCGATGGATGCAGGACTTTCACATGGGCTGAGTCTCCTAAGTACCAATGGGGACAACTGTGCTGCTCCCATTAAAGAGTATAATCATGTTTCATCCACATCCTCATGTGGAGACAATAAGAACTTTGGCCCAGCAGATCCTCAGAGAGGAAACACCAAAAGAGAGGAACTGGGAGAATATTCTATGACAGGAAAAAAGAGAGGTTTCTGTCTGATCATTAACAACTGCGACTTTAGAAATTCCCCTCTACCGTTAAAAGAAAGAGCGGGAACACACATTGACAAAAAGAGTTTGGTGAGTGTGTTTAAGTGGCTGGGCTTTGAGACACAGACTGAGCCAGACTGCAGTCGGGAGAAGATACTGTCTCTACTTGCGGAGCTGCGCAACCGGGATCACAGCCAGATGGACTGCCTGGTGTGCTGCGTTCTGAGCCACGGCCTAGAGGGAGGTGTTTACGGGGTGGACGGGCTGGAGGTCAGTGTCAGGGAGCTCACAGAGCCCTTCTCTGGACTGGAGTGCAGCTCACTGAGGGACAAGCCCAAGCTGTTCTTCATCCAGGCCTGTCAGGGCAACAAGGAACAAAAGCAAGTGTTCATCCAGTCTGATGGCCCAGCACCAAGCTCTACTACCTCCAGCTCTATCTGCACTGATGCAGTGGTACACAGAGACTCCATTCCCACTGATGCTGACTTCCTTCTGGGCATGGCCACTGTCCCTCACTTTGCCTCTTTTAGAGACAAGAGGCAGGGCACTTGGTTCATCCAGTCGTTGTGCCAGAACCTCATCAACTTGGTGCCCAGtggGTATGACTTGCTGTCCATCCTGACCAAGGTGAATGATGATGTCAGCAGAAAGACAAATGGCATTAAGAAGCAGATGCCCCAGCCTGCATACTCGCTCAGAAAGAGGGTGGTCTTTCCCATTCCCAAAGAACCACCTCCCAGACTATGTGAGCCACAAGCATTGGCTTGAGAACACTAGAGCAGATTTCTTTAATGGTCGTCACCTTTCCCATCTATTCAGGGTACTGATTCAGAAACTAGTTGAGTGGACTCTCACCGACGATATTAATCCATGGGGAAAAGACTAGTACTTGAATAGCACTGCCCTAGACTGAGAGACTGTCTCCACACTCCTGTCTACACTGCACACCTCAGGGATCCCTCAAGTATAAACTGCTGTGTTTTTCCAAAACTGAATGTTAACTGTTTTTTACACCTTATATAAAAAATGAAATTCAGTATAAATATATCCAAAGAACTGTAAATAGAACGTTTCAGGAATTTTTTTAAAGGGTGTTTTTAAATGTTGTAGAGAAAAAGCAAGAACAACCGAAGAGCACTTAATATGCAACGTTTTCCACATGTTTTTTTCTAAATGGTCAATTTCTTACTCCCTTGCACATTGGCTTCCTAAATGAATACAAAATAACATTTTCAATCAATATAGAtaatgttgttgttgctgctgtttcAATACATCACAGTGTACTCCTTGACACCACATGTCATACAACACATTTAAGACAAATTCTATGATGGAAGAATAAAAAATATGGTCAAACATG

Function

NR:

description
caspase-8-like isoform X3

GO: NA

KEGG:

id description
K04398 CASP8; caspase 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597241.2 False 2463 mRNA 0.45 13 50534079 50542111
XM_021597240.2 False 2519 mRNA 0.45 13 50534079 50542288
XM_021597242.2 False 2434 mRNA 0.45 13 50534079 50542288
XM_021597243.2 True 2235 mRNA 0.45 12 50534079 50542288

Neighbor

gene id symbol gene type direction distance location
prkra LOC106586253 coding downstream 8748 50520265 ~ 50525331 (-)
LOC110520139 LOC106586251 coding downstream 91149 50440201 ~ 50442930 (-)
pde11a pde11a coding downstream 98005 50378400 ~ 50436074 (-)
nfe2l2a LOC106586247 coding downstream 201173 50325109 ~ 50332906 (-)
evx2 evx2a coding downstream 409459 50119669 ~ 50124620 (-)
LOC110505276 NA coding upstream 698 50542986 ~ 50543432 (-)
LOC110520143 LOC106586256 coding upstream 3778 50546066 ~ 50585895 (-)
LOC110520149 stk24 coding upstream 76733 50619021 ~ 50636522 (-)
slc15a1a LOC106586093 coding upstream 110345 50652633 ~ 50665607 (-)
LOC110520150 LOC106586262 coding upstream 123507 50665795 ~ 50788221 (-)
G269762 NA non-coding downstream 2189 50531271 ~ 50531890 (-)
G269761 NA non-coding downstream 2879 50530954 ~ 50531200 (-)
G269687 NA non-coding downstream 115195 50418537 ~ 50418884 (-)
G269680 NA non-coding downstream 123181 50410694 ~ 50410898 (-)
G269678 NA non-coding downstream 124274 50409472 ~ 50409805 (-)
G269779 ino80d non-coding upstream 58690 50600978 ~ 50605536 (-)
G269817 NA non-coding upstream 159958 50702246 ~ 50702996 (-)
G269865 NA non-coding upstream 236381 50778669 ~ 50778893 (-)
G269866 NA non-coding upstream 236863 50779151 ~ 50779357 (-)
G269883 NA non-coding upstream 289352 50831640 ~ 50833105 (-)
LOC110520121 LOC106581751 other downstream 632541 49895327 ~ 49901575 (-)
LOC110520119 NA other downstream 662434 49867187 ~ 49871681 (-)
LOC110520112 LOC106586230 other downstream 966605 49563841 ~ 49608114 (-)
LOC118944672 NA other downstream 1031108 49494001 ~ 49503025 (-)
LOC110520160 LOC106586095 other upstream 586152 51126600 ~ 51130404 (-)
fgf9 NA other upstream 931036 51471899 ~ 51478510 (-)
il1rl1 il1rl1 other upstream 1055111 51596933 ~ 51619476 (-)
LOC110520182 NA other upstream 2165895 52693956 ~ 52708816 (-)
G272713 LOC106586324 other upstream 2707638 53249926 ~ 53251084 (-)

Expression


Co-expression Network