LOC110520148 (LOC106586260)


Basic Information

Item Value
gene id LOC110520148
gene name LOC106586260
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50595616 ~ 50601655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597253.2
gaacgcactgaagtcggagaattccgagttcccagttgttttgaacgcgacaTATATTACGGGAATGACCTAATCGTGTCGCATTTGAATAGAGAAAGTGCGCAGTCAGTGGTGTCCATTGGGGTACTGCCGATGCTAGTGGCAAGCATGTTGCGTCTACCTGCGGTGAGTCGCGCTCTCGGAGTCGCTCACTCTACAGGGAGCGTGGCAATCACAAAAAATGTTCACAACGCAGCTACAGCAGCAGCCAGTAACCTGGTGGAGGTATTTGTGGATGGGAAGCCACTCATGGTGGAACCAGGAACCACAGTGCTGCAGGCATGTGAAAAGGTGGGAGTGCAGATTCCTCGCTTCTGTTACCATGAGCGCCTGTCAGTTGCAGGGAACTGTCGGATGTGTCTCGTGGAGATTGAGAAAGCTCCAAAGCCAGTGGCAGCATGTGCCATGCCAGTCATGAAGGGTTGGAACATTTTAACTGACTCTGACAAAACAAGGAAGGCTAGAGAGGGTGTGATGGAGTTCCTGTTGGCCAATCACCCTTTAGACTGTCCAATCTGTGACCAGGGGGGAGAATGTGAccttcagGACCAGTCCATGCAGTTTGGCAGTGACCGGAGCCGCTTCTTGGAGAGCAAGAGAGCTGTGGAGGACAAGAACATTGGTCCCCTCATCAAGACCATCATGACCCGCTGTATCCAGTGCACCCGATGTGTCCGCTTTGCCAGTGAGATTGCAGGTGTGGAGGATCTGGGAACCACTGGAAGGGGCAATGACTTGCAAATTGGCACTTATGTGGAGAAGATGTTCATGTCGGAGCTGTCTGGGAATGTAATTGACATATGCCCTGTGGGAGCACTGACTTCCAAGCCGTATGCCTTCACTTCCCGACCCTGGGAGACCAGGAAGACTGAATCCATTGACGTGCTGGATGCGGTGGGCAGCAACATCGTAGTGAGCACACGGGGTGGTGAGGTCATGAGGATTCTGCCCCGTCTCCACGAGGACATCAATGAGGAGTGGATCTCAGATAAGACCAGGTTTGCCTACGATGGGCTGAAGCGGCAGCGCCTCACTCAGCCCATGGTGAAGGATGCGTCTGGACAGCTGGTGGCCACTTCCTGGGAGGATGTGTTGACTAGAGTGGCTGGGGTGTTGCAAGGAGCCCAAGGCACCAGTGTAGCGGCCATTGTAGGAGGGATGGTGGATGCAGAGGCTCTAATCGCCCTGAAAGACATGCTGAACCGCTTGAATAGTGACAGCCTATGTACTGAGGAGATCTTCCCCATGGCTGGGGCTGGTTCTGACCTGCGCTCAAACTACCTACTGAATTCCCGCATCGCTGGCATTGAAGAGGCTGATTTGCTGCTCCTAGTTGGCACCAACCCACGCTATGAGGCACCACTTTTCAACGCACGCATCAGGAAAAGTTGGCTTCATAACGAGCTGCAGGTAGCCTTGGTGGGGCAGGAGGTGGACTTGACCTACACATACGATCACCTTGGGGAGTCTGCTAAGGTCCTGCAGGAAATAGCTTCTGGGACCCACCCCTTCTCTAAGGTTCTTGCCAAGGCAAAGCGTCCTGTTGTGGTGTTGGGCAGTGGTTCCCtgcagagagaggatgggggcgCAATACACGCAGCAGTGTCTACCATTGCTCAGAATGCCCGTGTCAGCAGTGGAGTGGAGGAAAGCTGGAAGGTTCTCAATGTGCTTCACAGGGTGGCCAGTCAAGTAGCTGCGTTGGATCTTGGGTACAAGCCAGGCGTGGAGGCCATCAGGAAGAATCCGCCCAAAGTCCTGTTCCTCCTTGGGGCCGATGCTGGCTGCATCACCCGCCAAGACCTGGCAAAGGACAGCTTCAtcatttatcaggGGCACCATGGAGACGCTGGGGCGACGATGGCTGACATCATTCTCCCTGGAGCAGCGTACACAGAGAAATGTAGCACCTATGTGAACACTGAGGGGCGCGCCCAACAGACTAGGCTGGCTGTGACTGCTCCAGGCATGGCCAGGGAGGACTGGAAGATCATCCGCGCCATATCTGAGCTTGCTGGACTGACACTGTCCTATGAGACCATGGATGAGGTGCGTGACAGATTGGCGGAGGTTTCACCCAGCCTGGTGCGCTATGATGACGTGGAGGAGGCTAACTATTTTAAGCAGGCAAATGAACTGGCCAAGGCTGTGAATCAGACCATCCTCACAGAGCCTCTGGTTCCTCCACAGCTCACTGTTCGAGACTTTTACATGACAGATCCTATCAGCAGAGCCTCCCAGACAATGGCTAAGTGTGTGAAGGCTGTAACAGAAGGAGCCCAAGCTATAGAGGAACCATCCATATGCTGAAGCTCTGTTTTCAGGGTCATTCCTCTCTAAATGTAACATGTCTATCCAACTCTCACATACTTGCAGAAATAACCATTAGGCCTACATATATCCATAGACATATCCATAGATATGTACAGTGTCATTGTAATAGATGCCTGTTCAACTCTCACACACCTATAGAAATCATTTGCACACCTACAaaaatatacaaatgtatgtCATGAAGTCAATGCAATAGATGCAGTACCTCATACAATTCTCACTTTAACAACAGCTGTGGCACATCCATAGAAACATATTTATTATGCAGTAAAGTTATTGTAATAGATGCCTATTCCATTCCTAACTATAGACACAACTTCCTACACGCACAACTTCCTATGCTATAGTATACACACAACTTCCTCATACCCTTAATGACCAAATGCAGTACAAGCACCTTTCAGTCTTCCAGCTGACAATGGCATAGATCATTTATTTCCTCTATGTATATTACCTTACCACTGTGAATTGTGTATAGATTGTATTTTCCCCAATGATTGAGAATACGCTGCTTTGTAGATAATGTATACAAGAGTACGTGTAATAAATCTATTTTTCTTCATTTAGTA

Function

NR:

description
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial

GO: NA

KEGG:

id description
K03934 NDUFS1; NADH dehydrogenase (ubiquinone) Fe-S protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597253.2 True 2942 mRNA 0.50 19 50595616 50601655

Neighbor

gene id symbol gene type direction distance location
gpr1 LOC106586257 coding upstream 3311 50588958 ~ 50592305 (+)
osbpl6 LOC106586252 coding upstream 75751 50455039 ~ 50519865 (+)
agps LOC106586249 coding upstream 218526 50338167 ~ 50377090 (+)
LOC110520136 NA coding upstream 259708 50334300 ~ 50336340 (+)
LOC110520134 ro32 coding upstream 274322 50316070 ~ 50321294 (+)
LOC110520146 ino80d coding downstream 328 50601983 ~ 50618761 (+)
LOC110520157 LOC106586094 coding downstream 356359 50958014 ~ 50959445 (+)
uggt2 LOC106586268 coding downstream 463519 51065174 ~ 51110275 (+)
LOC110520162 LOC106586269 coding downstream 546889 51148544 ~ 51199761 (+)
LOC110520163 LOC106586270 coding downstream 626830 51228485 ~ 51230831 (+)
G269085 NA non-coding upstream 64676 50527538 ~ 50530940 (+)
G268989 LOC106586251 non-coding upstream 152605 50440203 ~ 50443011 (+)
G269022 NA non-coding upstream 180073 50415338 ~ 50415543 (+)
G269019 NA non-coding upstream 185366 50410023 ~ 50410250 (+)
G269009 NA non-coding upstream 186549 50408856 ~ 50409067 (+)
G269126 NA non-coding downstream 43338 50644993 ~ 50645192 (+)
G269223 NA non-coding downstream 185916 50787571 ~ 50788258 (+)
G269224 NA non-coding downstream 187145 50788800 ~ 50790055 (+)
G269231 LOC106586263 non-coding downstream 202935 50804590 ~ 50809753 (+)
G269279 NA non-coding downstream 273634 50875289 ~ 50875499 (+)
hoxd3a hoxd3 other upstream 412590 50162278 ~ 50184327 (+)
G267529 NA other upstream 740114 49836617 ~ 49855502 (+)
G267381 NA other upstream 1039778 49554498 ~ 49555838 (+)
G267358 NA other upstream 1083141 49510803 ~ 49512475 (+)
LOC110520046 LOC106586167 other upstream 3763372 46801058 ~ 46832288 (+)
G269291 rap2a other downstream 296934 50898589 ~ 50900277 (+)
LOC110520169 il1rl1 other downstream 972325 51573980 ~ 51582567 (+)
acvr2aa LOC106586327 other downstream 2565297 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 other downstream 2619772 53174264 ~ 53235027 (+)

Expression


Co-expression Network