LOC110520154 (rap2a)


Basic Information

Item Value
gene id LOC110520154
gene name rap2a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50898557 ~ 50911701 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597258.2
GCTGTTTCCGTGTGGCATTCAGATAGTCATGAGTGAGGTTAACAGCAAATATTGGTAGCCATTGGACTCCTTGCACATCTGTCTGGTGGGAAAGACCCGTCTCATTTTCGTTGGTACGGAAGCCGAGAGGGGACCGGTTGATTACACGGCGGCGGTGGGTCTCCACCCGAGAGTATGGCGGTCAGGATTGTATTCGTGAACGCATAAGAAACGGGGAGatgaaagagatggtgaaaaagcAAGGAAACTTATATTAATAGGCTTAACTCttaaatttgtatttatttatttatcaacaTTTATTGAGATAAAACGCGCAAGTCTTGCAGAAACCATCAGGAACCGTCCTGTTTTTCTCCAATGTCTTCGCTGGAGcaagttttgtttttttgtgatgCATAGAATGGTGAGCTAAGCAGATGAAAAACCACACGTTTCACATTGTCCAGCGTTTTGATACCTTTTAAtgcacattttaaaaaattgcagTCGTTTCGATGCGCATAGCCTAGTAATCAATGTCTGGTGTGCCTGTGGGAATTTCTACAATGAAATCCATCTTCGGGCAGCGAGTCTTTGTGCTCAGCTTTTTATTTGCCATTGCTGAGCGGTGGTAAGCAAGGCTGTATTTTTTATATCCGTTCAAAATGGGACACGAATGAATGCCATTTGCACGGATATATTTTATTCTATGTCGCGCGGAGAGTGATAGCTTTCGACAATCTCTTGAAATCATCAAATAACAAGGGAGCAATGCGCGAGTACAAAGTGGTGGTCCTCGGCAGCGGTGGGGTCGGGAAATCCGCCCTCACTGTTCAGTTTGTGACCGGGACGTTTATTGAGAAGTACGACCCGACCATAGAAGATTTTTACCGCAAAGAAATCGAGGTGGATTCCTCACCCTCTGTTCTGGAGATTCTTGACACTGCTGGTACCGAACAGTTCGCATCCATGCGGGACCTTTACATAAAAAATGGCCAAGGCTTCATACTGGTCTACAGTCTTGTCAACCAGCAGAGCTTCCAAGACATCAAACCCATGAGGGACCAGATCATCAGAGTGAAAAGGTACGAGAAAGTCCCAGTGATCCTGGTGGGGAACAAGGTGGAcctggagagtgagagggaggtgTCGGCCAGCGAGGGCCAGGCTCTGGCAGAGGAGTGGGGCTGCCCCTTTATGGAGACCTCGGCCAAGAGCAAAACCATGGTGGACGAACTGTTCGCCGAGATAGTTCGGCAGATGGACTACGCCGCCCAGCCAGACAAGGATGACCCATGCTGCTCCTCCTGCAATATACAATAGCCCCAGAGCCTAGGGGACGCcagggggacaggggagagaggaagtCTGCATACACCAAGATACTGTACGCTGAGAGGAGGATTATACTCACACCAACAACATGGATGATTAATAAACTCATGGTAGAACTGTGGTGGATTTTAACTCATTGGTGCATAAAATCAGTCATGATGTAATTGATAATAATGATATGTTAATAATTAATAGAATGAAATGAGGAATGCAAAGGATTTGCGCAAGAGAAACTGACAAACCGGACTAAAGAAAAGTGCACTCGCCTTATGTTATCCTGTTTTCTCTGGCGGAGAAAAAAAATATGTCTTGAGTCGTCCGTGCAGAATTACAGGTTTTGTAGTCTTTAAGTTTTCTGGGATCGGCTTCGGTAATGTTTATTTGACATTGTTTTGGTCTTGTTGATATGACCCAGTTTCTCTGAGCACATCAAGCTGGAGCCATCTTTCTCCATTTTAAGTTACCATGACAGCGCAGAGCGGCAGATAGAGGGGAGGAGATAATCCCTCTGATCAACTTGTTTGAAACATTGATGAGTAATTGATTTGCGTACTAAGTTTTCctgtacagagaaagagagggcctACCTACCTTCATCCAAGGggacgttttttgttgttgcacatCACTAGGACAGAACCAAAGAGGTGACTTGAACGCGCCTCCATATTTTCCCCTCTAATTTCCTTTTTAGTTGTTTTGAGGAATGGGAAGAAAATGGTGGAAAAGTCAGTGTCATTCTTGAAACAATGTTGTCTTCTCCTTCCTATTTTGTTTTGATAAGTGTAGCAGAGGTGTCTGGTTTCAGGAGGTTCTGACAACAGATTCCTGAATATTGTAACAGTTTCATTCGGATGGGACAAGGAGGACTCCATCTTTCAGTGTTTGAATATCTCAACAGACTCTTGTCTCTAGAAATGGTCTTCTTTTCAGGAATGAAGATGTCATCACTCATCATTCTCTACATTGTATTTTTTTGGTTGGGTATCACAATGAAATGGGATGCGACGTTGTCTCAACATCCCACTCTTTATGTATTCAGAGTATTGAAATTCATAGTAGGCTAataatagtgatgatgatgatgatgatgatgaataacaATTATAATTAACGGTAGTGTAAATATTTTGTATGGAAAGTGCCAGCTCCTAGGAAGACACTGACTCAACACATGTGGAATTGTCAACTGTATGCATGGCTAGTAAATTTAAAAAAGGACTTCATCGTTTGAGATTATAATAGACGATGGAAACGTGCAAACCAAACACATACACGTCTGGGTCTGGACACTGTCTCAACTGTATGTCGTTGTTGCCACGGGGAACCAGACCTTCCCTAGGTTACCATTTTTCATTGttaattttatatttttttatgtgaccatttactctttctccctccctaaATGAATGGTGACACTGTTTCATTAGGCACCCAAACAATAAAAGTGTGTTTAACACAATATATCCAA

Function

symbol description
rap2a Enables GTPase activity; guanyl ribonucleotide binding activity; and magnesium ion binding activity. Involved in several processes, including actin cytoskeleton reorganization; microvillus assembly; and positive regulation of protein autophosphorylation. Acts upstream of or within establishment of protein localization. Located in plasma membrane and recycling endosome membrane.

NR:

description
PREDICTED: ras-related protein Rap-2a

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07837 RAP2A; Ras-related protein Rap-2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597258.2 True 2791 mRNA 0.43 2 50898557 50911701

Neighbor

gene id symbol gene type direction distance location
farp1 LOC106586263 coding downstream 2275 50788788 ~ 50896282 (-)
LOC110520150 LOC106586262 coding downstream 110336 50665795 ~ 50788221 (-)
slc15a1a LOC106586093 coding downstream 232950 50652633 ~ 50665607 (-)
LOC110520149 stk24 coding downstream 262035 50619021 ~ 50636522 (-)
LOC110520143 LOC106586256 coding downstream 312662 50546066 ~ 50585895 (-)
LOC110520155 LOC106586265 coding upstream 1470 50912625 ~ 50951028 (-)
LOC110504222 LOC106586266 coding upstream 49158 50960859 ~ 51059220 (-)
dnajc3a dnajc3 coding upstream 200144 51111845 ~ 51126305 (-)
LOC110520160 LOC106586095 coding upstream 214899 51126600 ~ 51130404 (-)
cldn10b LOC106586096 coding upstream 218932 51130633 ~ 51135461 (-)
G269844 NA non-coding downstream 1700 50896611 ~ 50896857 (-)
G269847 NA non-coding downstream 2728 50895236 ~ 50895829 (-)
G269845 NA non-coding downstream 4067 50893275 ~ 50894490 (-)
G269920 NA non-coding downstream 5667 50892661 ~ 50892890 (-)
G269919 NA non-coding downstream 6274 50892037 ~ 50892283 (-)
G269947 LOC106586094 non-coding upstream 46569 50958270 ~ 50958676 (-)
G269954 NA non-coding upstream 57421 50969122 ~ 50969545 (-)
G269962 NA non-coding upstream 72512 50984213 ~ 50984421 (-)
LOC110520139 LOC106586251 other downstream 455685 50440201 ~ 50442930 (-)
LOC110520121 LOC106581751 other downstream 997019 49895327 ~ 49901575 (-)
LOC110520119 NA other downstream 1026912 49867187 ~ 49871681 (-)
LOC110520112 LOC106586230 other downstream 1331083 49563841 ~ 49608114 (-)
LOC118944672 NA other downstream 1395586 49494001 ~ 49503025 (-)
fgf9 NA other upstream 561623 51471899 ~ 51478510 (-)
il1rl1 il1rl1 other upstream 685698 51596933 ~ 51619476 (-)
LOC110520182 NA other upstream 1796482 52693956 ~ 52708816 (-)
G272713 LOC106586324 other upstream 2338225 53249926 ~ 53251084 (-)

Expression


Co-expression Network