LOC110504222 (LOC106586266)


Basic Information

Item Value
gene id LOC110504222
gene name LOC106586266
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50960859 ~ 51059220 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974546.1
ATTGGTTGCATTTTCTTGGTGTAAGATTAGCCATCATTGGTTAATTAATTGCACGGCACTAAACTCACATTCCGTTCTCAATTTCTCATAGCTTACTTTAAAAACATCGAATTGTCTAGTCACTTGTGTGTGCTGACTGATACGCAAGAGCTGAATGTAGGCTATCTGTTCTACGAGACAAGAAAGATTATGATCCTTTTATCCTATGCTAGCCTATAGCCAAGTTACAGTAGCCTTGGTTATGTCCACAAAAATCGATAGAGAGTATATTACCACGAAGAGGGCGTAACGTGATCACCGGGTCTTGAATGCAGCAGCATCTTCAAGTAATAGCCTAAGCTAGCCTGCAATATTTGAACAAAACTGAACCGCGCGATGAATGAGGATGCTTCAGGACCCATCCCACTGTAGTCGGAGCAGCAGTCGCTTGCCCCTTCATGCGCACGCCTTggacataaggatatatgaacgCCGACATTTCTCCACTTCCCTACAAGCACGTTTGTGGTGCTGAAGTGAATCAGACAACTGTTTCCCGAGATGTAAAGTTGTAATTTTGCGGGATCAGAATGAAACATGTTGACAGGTTCGGTTTCACTTGAAATTCTAGCATGGGGGACGTCAGTGTGCAGCACTGAAAATACCGTTTGTGAAGTTGGACAACCATGACGAGAAGTAACCGGAATATGTCATGTTTCGGCAAGCCTGCCTCGTTTGAAATGATCTGCTCTGGTGTGATATGACTGCAGTATCCTTGAAACATAAAGGTAGGCTACCTGCTTAGACCAAAATATGCCTTTTGATAGCAAGAACAATAACTAAATCTTGTCCAGATCAACATGTGGCACTTTGAAGATCCATAGACATTATTGTGATGAACCAAGCGGCAGCTACTGAAAGGATCATGTGTAATAATTCACACTAATGGCATGAAAACATATTCTTGTTAACATGGATGATAAATCCAATAAATTGATCTTAGTtcctattttagctgttcttttTGTAATGATAGGCTATCAATATATATGTCCAGCTGGCAGCAATTCTTGCCACTTTAAAACTGGGGAAAATTTGAGAGGGGTCAGTATACTTTCTACCCAATATCGGACAAACGAAGACTTTTACACAGAACTGGAGGATGACAGCCCTCCGAAATTGCCGTCAAAATTCAACTTTACTGAACGAGACCTTCAGCGACACGTGGATTTCAACATCAAAGGATACGATGTGATAGTGTTTTTACACATTCAAAAAACCGGGGGAACCACGTTTGGAAGGCACTTAGTTAGGAATATTCGTTTGGAGCAACCATGCGACTGCAAGCCAGGGCAGAAGAAATGTACATGCCACCGACCAGGGAAAGAGGAGTCCTGGCTGTTCTCTCGATTCTCTACGGGCTGGAGCTGTGGTTTGCATGCCGACTGGACAGAGCTCACCAATTGTGTACCTGTCATCATGGACAAGAAGGAAGCTCAAAAGAACAAAAGGGACTTCTACTACATAACCATGCTGCGTGACCCCGTCTCCCGCTACCTGAGCGAGTGGAAGCACGTGCAGCGAGGTGCCACCTGGAAGACCTCCCTGCACATGTGTGACGGGCGCTCGCCCACACAGGACGAACTGCCCACCTGCTACAGCGGGGACGACTGGTCGGGCGTCACCCTAACCGAGTTCATGGACTGCCCGTCCAACCTGGCCAACAACCGACAGGTGCGCATGCTGGCCGACCTCAACCTGGTAGGCTGCTACAACCTGTCCTCCATGAACGAGAGCGATCGCAACCACATCCTGCTGGGCAGCGCCATGAACAACCTGAAGAACATGGCCTTCTACGGACTGACAGAGTTCCAGCGCAAGACGCAGTACCTGTTTGAGCGGACGTTCAGCCTGCGCTTCATCGCCGCCTTCACTCAGATCAACAGCACGCGCGCCGCCAACGTGGACCTGAGTGAGGCTGTGCGCCGTCGCATCGAGGAGCTCAACTATCTGGACGTGCAGCTGTACGAGTATGCCAAGGACCTGTTCCTCCAGCGCTTCCAATACACCCGCCAGCGCGAGCACCAGGCGGAGCGATTGAAGAGGCGTGAGGAGCGCCGATGGCTTCGGGAGCAGAGGGAGCAGAGCAGGGCCTCACTCCCCAGACGCCGGGGGTACGGGGGCGGAGGCGACCTGGCCACGACCACTGAAGACTACACCAGCCAGGTGGCCCGCTGGTGAGGTCTTACCCTGgccacgcacacagagagaggtcaCTGGTGATCACCTCCAGAATCATTTCACAtggtactctttctctctctgcctctgtcaatctctctctatcgctctatcTTTTTCTGTCTACTAtctctatctttatctctttctcAGCTTCAGTGTGATCCTAGCGCTCTGCTAAAGTTTCTTTCTGGTTATGAAACTGCCAAGTCTGTGAGTCAGTATCACAGAAGCTCTGCCTTGGAGTGCCCTTTGGTGTCTTAGATCTTCAAATGGATggtttaatgtatttatttgtaatgaaTTGTTTTGCTGCTCCGTTGCTTTCCTGCCTCTTAGTCATGGTTATTTATTATCATGTAGATTATGATAACTCTTTAAAGGCAGTAAGTTAAGCTGAAAGAAGACACAATCAAAAGACGCTGCtagcaaatacatttttattgggACTCAATGTCAAGGGGTGGATATCAATCCGTGTTTTTTTGTTGCGACTGGCAGGAATATAGTAGTTCAACAGAAAACAATATAAAAGTGCTGATTCTCGCATGTCATGTGTCCATATTATATCTGAGAGACGGTTTGAGGATGGAGAGTTACTTCCAAAAGAAATGATGAGAGCCAAAGTACACCGACTTAGAAAATATTTGTCTTTGTTTACGTAGCTACTGTTTTCTTAATGGGACCTTGCAAATGGACAACTTCTCAGAAATAAGATAATGTATTTAGTTTCATTTTATCATGGCAGTTTCAATTATATTGACATTTCCCTCACACAAATATAGTGTAGCTGTAGTCAGTCAAGATAATGTCAGATGTTTTGATTATGATGCAAAAATGTTTTCTAGGGTGCAATATTCAGTAGAGTTTGTCTACATGCAACACCTTTCAAGTTTCAACTCGGAGGAACTGCTGTTTCTGTTCATCCACTATCTGTGTGTTGGAATGTGAAGTCAATCATAAACTCACAAAGAGAGGATTACCCTGAAGAAAACCAGCCTGATTTCTATTCTGCACTGACCAGACTTACCACATTCAGCTTTCACATTACAAATGGAAAGAACTCCTCAAGGAAGATTTTTCAAAAATGTTAAGCTTGGATTGTTTAAGTAGTCTTCTCCAGAAGGTAAAGATAACCACTAGGTAAATGCTCTAGGTGAGGGCTGAGGAGCCAGGTCAGTGTGGTTGGTGTGTGGACTGACTGTCAATGAGGTGATCAGCATTCGGCCCTCGTGCTCACCCCGTCACACTCCGTGGCTTAACATGTTTGTGGAGCCCACGCCAACGGCTTTGTGGGCTGCGAGGGGGGTTCTAAATGCTACCAGAATAACAGCCTGAGATGACACGGTAGCAGAATACAGTCGTTTCCTGTAGTAGGAAGGAGATGAAATGTACCACATCTAGTTTCATGTCTGATTGTCCCCCTCAAAACACAGGTAACTTCTGAATGAACATTAAACAAACTTGAACGTATCAAACGAGATTCATCTAATTGTAACGGTTGAATGACTTGCAGATGGCtgtgatgatgatgtcatgttaGATTAAATCATGGATTTGCTATTCtgatctgttgttctgttgtgaaCATTTCAACTCTCCaatgacaatattttttttataaaaatatgAATTTGCTGCTGCTTTCATTTTCACATTTATCCTGTTTTTACTTGATTTTTTCAGAAGATGTAGGTCTGTCTGATCACTGAGCACAGCTTTGGTCCATTAACCTTAACCGATGAGTGGAAGTTTTTGTTGTTTAAGTTAGTTTGTATCCAGTTAGTTGATTGACTGTGATGTAATAGTAACCATTATCACAGTTTGAGTTGGTATCCCTAATCCAGATTAGGCCTGCTCTTGGACTAAAAAACCTGCTAAATGGAAAAGCTCTATTGAAAATTATTTTTCATTCAGGAATATGCAGCATCTGTTTGCAGGaaactgttttttgtttttgttttaagtgATTGTTCAAGCTATACAATTattggagtgtgtgtgcgtgcgtaccaTTATTGTATATTGATCACAAGTTTGCCTGCAATTTCAGTGAGCCAACACACCATGTTTATACATTGCCCCAGCATTTTCAAACCAACATTATGGATACAATACCAAGTTTTATTTTGGGGGGAATGTGGAATGTGCTGTGAAGCAATCTCCCTGATGAAAAAAACTGCTTATATTCATGTAGTTGTTATCTGCTCAAACTTACGGTAGTGTGATGTgtatattgacgcaacatctgAAAAGTCTGAAATGACTATTTCAAACCTATTATCCTTATCAGGCCTCAGTGTAAATACAGCCATGAAATCAAGCCTAAAAAGAGAGTGTCACACTAGATATTGTCCTGCCATCCCCAAAGCCCTGTGACATGACATGTTGTGAAAGAGGGATTTGAATGAACTTCAACTGCCACTCAACTTAAGTGCACATCTTTGAAAAACAGGTCATCTTGCATTTATTTATTGCAAACAAGAGAGCTTGTCTGAAAGGAAAAAGGTTATAATACCATCACACGAGGGAGAACTTTCTACATGTACGTATCTGTATGTTCCTGTTCAAATTGTTGTGTATGAAAAGGACAGTCTTGATGCCATTTGATGTCTTATACTTTATCAGCAATGTTCTTGTCAGGTTCTGCAAGGCTGGGTGAATACTACTTCAGATATTAGAAAATAAATGCATTGAACAAACATGACCCTTTTCTGCCTGGAATCATTGGCATGAAGCCATAGACGTTAGGAAAGTTATCCAGCGACACTTAACCGCATTCATGAGGTCCTTGACCTTTAAAATGCAATACAAGCACTAGCTTCGTCCGTGTTAGCAAACAGCCCAGATAAACACCGTCCCAGGTCAGGTGACCAGGCGTCCAACATCTATCTTCATCGGTAGGTCATGCACTGTCGAAATTAAACTTGTTTGCGTGAATTATTAGCATTGGTTGTGTTTGCAAGATTTTGGCCTGTATTTTCTCCATCAATATTTTCATAACCGTGCATCATAACGAAGTGTGGTATAGTGGATGTGTTTCActtcatgtgtgtgtctgtctcctgagGATTACATTTCAGTGAGATATATTATATGCATTGTAAAACACGAACATTAGGTAGAAAGGAGAGGACCATTGAGAATAACACTAGTTGTTAATGGAAATATTCAAGTTCCTTTCCTGTTGCTATAGTGAGATTATTACTAAGGGAGAAATAAGGGAACCAGGGAGAATAATTCAGAATGTTCTGGTCCAGAAATAGCAGTTTATATATACAGGTATATGCACTGTACAATCATCAGTCTCTTTCATTTGCTGTTATTCAGCAGTGACAAGGGAAGGACATATTGGTCTGCTTACAAGACACTAATTGGACTAT
>TU306680
tgatgatgatgtcatgttaGATTAAATCATGGATTTGCTATTCtgatctgttgttctgttgtgaaCATTTCAACTCTCCaatgacaatattttttttataaaaatatgAATTTGCTGCTGCTTTCATTTTCACATTTATCCTGTTTTTACTTGATTTTTTCAGAAGATGTAGGTCTGTCTGATCACTGAGCACAGCTTTGGTCCATTAACCTTAACCGATGAGTGGAAGTTTTTGTTGTTTAAGTTAGTTTGTATCCAGTTAGTTGATTGACTGTGATGTAATAGTAACCATTATCACAGTTTGAGTTGGTATCCCTAATCCAGATTAGGCCTGCTCTTGGACTAAAAAACCTGCTAAATGGAAAAGCTCTATTGAAAATTATTTTTCATTCAGGAATATGCAGCATCTGTTTGCAGGaaactgttttttgtttttgttttaagtgATTGTTCAAGCTATACAATTattggagtgtgtgtgcgtgcgtaccaTTATTGTATATTGATCACAAGTTTGCCTGCAATTTCAGTGAGCCAACACACCATGTTTATACATTGCCCCAGCATTTTCAAACCAACATTATGGATACAATACCAAGTTTTATTTTGGGGGGAATGTGGAATGTGCTGTGAAGCAATCTCCCTGATGAAAAAAACTGCTTATATTCATGTAGTTGTTATCTGCTCAAACTTACGGTAGTGTGATGTgtatattgacgcaacatctgAAAAGTCTGAAATGACTATTTCAAACCTATTATCCTTATCAGGCCTCAGTGTAAATACAGCCATGAAATCAAGCCTAAAAAGAGAGTGTCACACTAGATATTGTCCTGCCATCCCCAAAGCCCTGTGACATGACATGTTGTGAAAGAGGGATTTGAATGAACTTCAACTGCCACTCAACTTAAGTGCACATCTTTGAAAAACAGGTCATCTTGCATTTATTTATTGCAAACAAGAGAGCTTGTCTGAAAGGAAAAAGGTTATAATACCATCACACGAGGGAGAACTTTCTACATGTACGTATCTGTATGTTCCTGTTCAAATTGTTGTGTATGAAAAGGACAGTCTTGATGCCATTTGATGTCTTATACTTTATCAGCAATGTTCTTGTCAGGTTCTGCAAGGCTGGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974546.1 False 5603 mRNA 0.43 2 50960859 51059220
TU306680 True 1137 lncRNA 0.36 1 50961582 50962718

Neighbor

gene id symbol gene type direction distance location
LOC110520155 LOC106586265 coding downstream 9831 50912625 ~ 50951028 (-)
LOC110520154 rap2a coding downstream 49158 50898557 ~ 50911701 (-)
farp1 LOC106586263 coding downstream 64577 50788788 ~ 50896282 (-)
LOC110520150 LOC106586262 coding downstream 172638 50665795 ~ 50788221 (-)
slc15a1a LOC106586093 coding downstream 295252 50652633 ~ 50665607 (-)
dnajc3a dnajc3 coding upstream 52625 51111845 ~ 51126305 (-)
LOC110520160 LOC106586095 coding upstream 67380 51126600 ~ 51130404 (-)
cldn10b LOC106586096 coding upstream 71413 51130633 ~ 51135461 (-)
LOC110520166 LOC106586272 coding upstream 217701 51276921 ~ 51389582 (-)
LOC110504232 LOC106586097 coding upstream 404991 51464211 ~ 51470676 (-)
G269947 LOC106586094 non-coding downstream 2183 50958270 ~ 50958676 (-)
G269844 NA non-coding downstream 64002 50896611 ~ 50896857 (-)
G269847 NA non-coding downstream 65030 50895236 ~ 50895829 (-)
G269845 NA non-coding downstream 66369 50893275 ~ 50894490 (-)
G270057 NA non-coding upstream 77706 51136926 ~ 51137490 (-)
G270067 NA non-coding upstream 87797 51147017 ~ 51147288 (-)
G270091 NA non-coding upstream 110989 51170209 ~ 51171519 (-)
G270098 NA non-coding upstream 121869 51181089 ~ 51181542 (-)
G270105 dct non-coding upstream 136112 51195332 ~ 51267591 (-)
LOC110520139 LOC106586251 other downstream 517987 50440201 ~ 50442930 (-)
LOC110520121 LOC106581751 other downstream 1059321 49895327 ~ 49901575 (-)
LOC110520119 NA other downstream 1089214 49867187 ~ 49871681 (-)
LOC110520112 LOC106586230 other downstream 1393385 49563841 ~ 49608114 (-)
LOC118944672 NA other downstream 1457888 49494001 ~ 49503025 (-)
fgf9 NA other upstream 414104 51471899 ~ 51478510 (-)
il1rl1 il1rl1 other upstream 538179 51596933 ~ 51619476 (-)
LOC110520182 NA other upstream 1648963 52693956 ~ 52708816 (-)
G272713 LOC106586324 other upstream 2190706 53249926 ~ 53251084 (-)
G269954 NA non-coding upstream 6404 50969122 ~ 50969545 (-)
G269962 NA non-coding upstream 21495 50984213 ~ 50984421 (-)
G269980 NA non-coding upstream 60016 51022734 ~ 51022938 (-)
G269981 NA non-coding upstream 60366 51023084 ~ 51023294 (-)

Expression


Co-expression Network