LOC110520160 (LOC106586095)


Basic Information

Item Value
gene id LOC110520160
gene name LOC106586095
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51126600 ~ 51130404 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597285.2
GGTTTTGACAACAGAGTCCATATCAAAACgctcctatacacacacacaccatgtcatcCAGTCCAGAGAGACATGTTATCACCTACTGAAACAAGACAACAAGCACCAACATCCTGCAGCAGTCCCGGCATCACGTGTGTCCTGAGTCTCGATCCCTCACGCGCACCTCTTCAGGAGTGCCTAGGAGCAGCAGGTTAGCACACCCATCCTTTCTCACCTGGAACCATGAGGAAAAGGCTGATCCAGGTTTCTGGTTTCCTGATCTCAACGCTGGGATGGCTTTTTGTACTTTGTACTATGGCAATGGATTACTGGAGGATCACCCAGATAGGTGGCCAGGGAGGTTCATTCATTATCAAGGTGGCCTGGTACTGGTCCAACCTGTGGCAGGACTGCTTCACAGACTCGACAGCAGTCACCAACTGCAGAGACTTCCCTGTGCTGTGGTCTGTCAAACCTATCGTTCAGGGAGTGAGAGGCCTGCTGATGTGTGGACTAACCCTTGGGTTTTTTGGTGCAATATTTTGCTTTGTTGGCATGGAGTGCACTTATATTGgaggagggggaaaaaacaaggaTATGCTTTTGTTCGCTGGATCCGTATTTCACTTTGTCGGTGGTGTGTCAGACTTAGCTGCATACTGCTTATACATCAACAAAGTCGCAAGGACAACTTTCACTCAATCTTCGCCAGGAATCCTAAAGTATGACTTAGGACCTCCCATTTTTATAGGATTGGTTGGGTCTTTTTGCATCCTCTTAGGGGCCATTCTCTATGCTGTGACTGTGTACAAAGTCCTATTCCCTAAAGCAAAAGTGGTGCTTGCCCATGGAGGTCCTAGAACACGAACATACATGGCCTCTCGGGCCGGAGGCAGAACCCTCTACACTGGATACTACAGACCACCCAGACAGTACAGATCCTACGGCTCAGGGATAACCAGCAGCTCTAAACTCACTAGGATCTCCCAGATAACACCTGAGAAACTGTCAGACAGAGATGCTTTTGTGTAGTGGCATTGGCTACAGTACTAGttccagacaatgtgtttgtaaATACCATTAAGATAAAGTCTATTAAGGAAATTGTGAACATTGTTTTTTTCCCAGCTACATTATTTGATCTAGTCTTTTCAGGTCAATtttcatttgatcactctgttgttgcagagaattttcctgcacagaaGGAAATGCTAAttctagtgtatttgaggttttaaaaggcttctaaagtttgtaatttccatgtAAAATTTTCAGATTTGCTTTATCGGAACTAAAATTGTATCAACCCCGACAAAAAAAGTCAATTAATttcaatccacataataattcacatttcctgtccctgcaggattattttcctgctgtttaactggtcaaattaagatagtattgctatgtattgtattgctatgCCATAGGTTTTAATTTACACATCTGCCACATACTGTTAAGCGTATCTGTTTTCTGTCTGTATGATTGATACACCCAGAAAAGATGAGATTCTGTGAAAGTATGACATGAGAAGGATCTTTGTATGCAATTATGATATGTTTGATATTTTTATGAATATAAATACAACTTTGGATATGCAATAGAAATAATGGAGTGATTATTGCAGACACAACTATTTCGTAAAACCTCTAGTGCAGACTGAAACCTATAAGGAAAATTATGGCAAAGTCATAATATGAACACGACCTGTGTTTTTAGGCCTATACGAAACAAACTTAATGTTGGTAGAATCCTGGTTATTGTACCAATAACAAACATGGCATGCCCTCATGGGGAGAAAAGTCATCGGTCAGCATACACCTTGCCTCTTTTTCCATCAGTTTGgagagaggaggtgtgatgatatACACAAAGACACGCTCTCAATGTGTtgaggaggggtgggggtggtggaagaaggtgagccTTCCTTCTCCCGATAGCTCACAGTTCTTCACAGTTTGAGTTCTGAAAGGGACGGCAACAGCTCAACTGCCATTACTTGGCTTTCTCCCTCTGCCTGGTGTCTGTTGCATACAGAGAGGCAGCAATCAACTACAGAACAGTAGCAATGTGCATGGAGATTGGCTGCTTAGTGCTCTGTGTGAGTGGATGGATCCTGGTCTGCTCTACAATGCCACTGAGATCTGGACCTGCTCTGAGGTAGACAGCATCGTTCTGACCACTTCAAACTACTTCTCCAATCTCTGGAAGGATTGCACTTCTGATTCAACAGGAGTGTTCAACTGCAATGGTATCCCATCAATGTTCGCATTGAACTGGGGCATCCATATGCTCCGGGCTCTGATTATCACCTCTATTATCTTGGGATTCTGAGATAGGAGGATCTTCTGCACTAAGATAGGAGGATCTGAGGTTACAAACGCAAGTGGGACTTTTGATGGATGGATTAACTATCTTGTGTCtggtaaacattttatttttgttgttgacgTGGTTATTCTGATCATTGGGTTCCTGGGTGAACTCGAACAGTCGAGTTGTCTTGTTTCAGGGTTGTGTTCCATGACTGCATTCTCTTATTATGGAAACAAAGTAAGAGTAGAATTTCAGGATCTCAATTTCAGGGCACAAGAGTTAGTAAACATCTATCAATTCTATGTAGATCCAATACTTAAATAGGGGTTTAGATTTGTATTCAGTAATATATGAAAACACTTCACAGCTATTATAGTATAAGGGAGGGACATGGAGCTTTAAACAATGAAAATGCATGACACACCTTcatggtattttttttttaatcagataCTAATAGGTAAAGAAATGGAAGTAGGTGTTTCCATTGGATGTGGAGGCTCGGACAGTTGGGGGCCTCATTTGCAGTTTCTTTGCACATAGGGAAGGGTGTCAATCAAGGTGTGTTTTatagattttattttttaaatgacatgcTCTAGATTTCAAATCAACTGTTTTTCCATTGTACGCTTTATATTGCATCCCATGTCctgaaatgtattttatatgtGAATAAAAGATCCCAAACATT
>TU306786
GTACTGATGTAtgctttctactattttctaAGGTATGACTTAGGACCTCCCATTTTTATAGGATTGGTTGGGTCTTTTTGCATCCTCTTAGGGGCCATTCTCTATGCTGTGACTGTGTACAAAGTCCTATTCCCTAAAGCAAAAGTGGTGCTTGCCCATGGAGGTCCTAGAACACGAACATACATGGCCTCTCGGGCCGGAGGCAGAACCCTCTACACTGGATACTACAGACCACCCAGACAGTACAGATCCTACGGCTCAGGGATAACCAGCAGCTCTAAACTCACTAGGATCTCCCAGATAACACCTGAGAAACTGTCAGACAGAGATGCTTTTGTGTAGTGGCATTGGCTACAGTACTAGttccagacaatgtgtttgtaaATACCATTAAGATAAAGTCTATTAAGGAAATTGTGAACATTGTTTTTTTCCCAGCTACATTATTTGATCTAGTCTTTTCAGGTCAATtttcatttgatcactctgttgttgcagagaattttcctgcacagaaGGAAATGCTAAttctagtgtatttgaggttttaaaaggcttctaaagtttgtaatttccatgtAAAATTTTCAGATTTGCTTTATCGGAACTAAAATTGTATCAACCCCGACAAAAAAAGTCAATTAATttcaatccacataataattcacatttcctgtccctgcaggattattttcctgctgtttaact

Function

NR:

description
claudin-10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597285.2 False 3013 mRNA 0.42 6 51126600 51130404
TU306786 True 708 TUCP 0.39 2 51128440 51129310

Neighbor

gene id symbol gene type direction distance location
dnajc3a dnajc3 coding downstream 295 51111845 ~ 51126305 (-)
LOC110504222 LOC106586266 coding downstream 67380 50960859 ~ 51059220 (-)
LOC110520155 LOC106586265 coding downstream 175572 50912625 ~ 50951028 (-)
LOC110520154 rap2a coding downstream 214899 50898557 ~ 50911701 (-)
farp1 LOC106586263 coding downstream 230318 50788788 ~ 50896282 (-)
cldn10b LOC106586096 coding upstream 229 51130633 ~ 51135461 (-)
LOC110520166 LOC106586272 coding upstream 146517 51276921 ~ 51389582 (-)
LOC110504232 LOC106586097 coding upstream 333807 51464211 ~ 51470676 (-)
fgf9 NA coding upstream 341744 51471899 ~ 51478510 (-)
LOC110520170 il1rl1 coding upstream 420293 51550697 ~ 51559339 (-)
G269981 NA non-coding downstream 103306 51023084 ~ 51023294 (-)
G269980 NA non-coding downstream 103662 51022734 ~ 51022938 (-)
G269962 NA non-coding downstream 142179 50984213 ~ 50984421 (-)
G269954 NA non-coding downstream 157055 50969122 ~ 50969545 (-)
G270057 NA non-coding upstream 6522 51136926 ~ 51137490 (-)
G270067 NA non-coding upstream 16613 51147017 ~ 51147288 (-)
G270091 NA non-coding upstream 39805 51170209 ~ 51171519 (-)
G270098 NA non-coding upstream 50685 51181089 ~ 51181542 (-)
G270105 dct non-coding upstream 64928 51195332 ~ 51267591 (-)
LOC110520139 LOC106586251 other downstream 683728 50440201 ~ 50442930 (-)
LOC110520121 LOC106581751 other downstream 1225062 49895327 ~ 49901575 (-)
LOC110520119 NA other downstream 1254955 49867187 ~ 49871681 (-)
LOC110520112 LOC106586230 other downstream 1559126 49563841 ~ 49608114 (-)
LOC118944672 NA other downstream 1623629 49494001 ~ 49503025 (-)
il1rl1 il1rl1 other upstream 466995 51596933 ~ 51619476 (-)
LOC110520182 NA other upstream 1577779 52693956 ~ 52708816 (-)
G272713 LOC106586324 other upstream 2119522 53249926 ~ 53251084 (-)
G274344 LOC106586294 other upstream 3549514 54679918 ~ 54682805 (-)

Expression


Co-expression Network