cldn10b (LOC106586096)


Basic Information

Item Value
gene id cldn10b
gene name LOC106586096
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51130633 ~ 51135461 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597286.2
TAACCTGGGTTACTTCTCTAGAGCCCACGCCTGGGATTGTCTTCAACAATATTCATTGGCCAGTGGACCATCAGTCACACCGTTACTCTTTTGTCTGAAGATCTTACCAACTTCAGTAGAAAGCACTCTATTGTACACAATGAGTAACATGGCGACAGAGATTTTGGCCTTTATTCTCACCACGTCTGGCTGGGTCCTGATCTCCTCCACCATACCCACGGATTACTGGAAGGTGTCCTCTCTGGACGGCACGGTCATCACCACAGCTACCTTCTGGTCCAACCTGTGGAAGACCTGTGTCACTGATTCAACAGGAGTCTCCAACTGCAAGGACTTTCCCTCCATGCTGGCACTGGACGGCTACATCCAGGCCTGCCGGGGTCTGATGATCACTGCTGTATGTTTGGGCTTCTTTGGTGCTGTCTTTGCCTTGGTCGGAATGAAGTGCACCAAGATTGGGGGATCAGACCAAAGCAAAGCCAGGACAGCTTGCATCGCCGGAGTCAATTTCATACTCAGCGGTCTCTGCTCATTGTCTGCATGCTCCCTGTATGCACACAGGATAACATCTGAGTTTTTTAACCCCATGTTTGTCGCTCAGAAGTATGAACTGGGGGTTGCCTTGTTCATTGGTTGGGCAGGATCTATTCTTTGTATTCTGGGAGGGGTGATACTCTGCTTCTCAATAGCAGATAGTTCCACTACAAGtcACACAGGCTATGCCTACAGAGGAGCTACCTCTGCCTCTAATGTTTCTTCTCACCCTAGAGGGCATGCACAGCCCATGAGCCAGAGGCCTCCACCAGAGTACAGTAGCTCTTCTAGAGTACAGCACTTTGATAAGAATGCCTATGTGTAAGGGATGATAGGACAAATGCAGAACCTGAACAGCGGCATGGTCTCGAGAGGCCAATTTACTGCCATACCAGTTAAAAGGAGGAGAAAGAATGTGTTACGTGACTGGCTGGCCCATTGTGTCACAAATTATGACAGATCAGAAAGAGATCACTTTATATTGGAGTTGATCCCCCTGTTCACCTATTTATGACAGCACTAATTTCTAGTCCAATGGAAATCAGAGCCTTTTTGAGTTCGTAGGAGATTTGCTGAGATTTGTGGCTCTGATATTTACTTTATAATAAAATGTGAGCCTTCTGGTAGACCTACGCTGCGAATCGAAATAGTGTCAATAATAACCGGTTTTCTGTACAAttgttgatttttttattttattttttgataaTTGTTTGACATTAAAGTGAGGATGTGAACTGTTATATTGTCTTGTGTTGCCTGTCTCTTTATCTGCTAGACACACATTAAAATGCTGTTAATCTTTAATGACAGAACATTTAAAAGTATGTTTAACATCGACAACATCATGTTTCTAACCTACCATTGACATAACCATAAACTACAGCATGTTTTATAATCAACATATCTTTGAGGTCACTTTTGGAAAAGTGTTATCCATTTACAGTACCTCTTGTATATTTCAATAACTCATTATTTACAGTCCAATTTCAACTGGCACCTATTTCAGAAAATCCTAAAAAACTTGTATTTAGCCTATTATAAAATCATGTGTATTTGTGCTTGTTTCAAATAATCCTCTCTCCCTAAAATATGATGTAAT

Function

NR:

description
claudin-10-like

GO: NA

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597286.2 True 1636 mRNA 0.42 5 51130633 51135461

Neighbor

gene id symbol gene type direction distance location
LOC110520160 LOC106586095 coding downstream 229 51126600 ~ 51130404 (-)
dnajc3a dnajc3 coding downstream 4328 51111845 ~ 51126305 (-)
LOC110504222 LOC106586266 coding downstream 71413 50960859 ~ 51059220 (-)
LOC110520155 LOC106586265 coding downstream 179605 50912625 ~ 50951028 (-)
LOC110520154 rap2a coding downstream 218932 50898557 ~ 50911701 (-)
LOC110520166 LOC106586272 coding upstream 141460 51276921 ~ 51389582 (-)
LOC110504232 LOC106586097 coding upstream 328750 51464211 ~ 51470676 (-)
fgf9 NA coding upstream 336687 51471899 ~ 51478510 (-)
LOC110520170 il1rl1 coding upstream 415236 51550697 ~ 51559339 (-)
il1rl1 il1rl1 coding upstream 461472 51596933 ~ 51619476 (-)
G269981 NA non-coding downstream 107339 51023084 ~ 51023294 (-)
G269980 NA non-coding downstream 107695 51022734 ~ 51022938 (-)
G269962 NA non-coding downstream 146212 50984213 ~ 50984421 (-)
G269954 NA non-coding downstream 161088 50969122 ~ 50969545 (-)
G270057 NA non-coding upstream 1465 51136926 ~ 51137490 (-)
G270067 NA non-coding upstream 11556 51147017 ~ 51147288 (-)
G270091 NA non-coding upstream 34748 51170209 ~ 51171519 (-)
G270098 NA non-coding upstream 45628 51181089 ~ 51181542 (-)
G270105 dct non-coding upstream 59871 51195332 ~ 51267591 (-)
LOC110520139 LOC106586251 other downstream 687761 50440201 ~ 50442930 (-)
LOC110520121 LOC106581751 other downstream 1229095 49895327 ~ 49901575 (-)
LOC110520119 NA other downstream 1258988 49867187 ~ 49871681 (-)
LOC110520112 LOC106586230 other downstream 1563159 49563841 ~ 49608114 (-)
LOC110520182 NA other upstream 1572722 52693956 ~ 52708816 (-)
G272713 LOC106586324 other upstream 2114465 53249926 ~ 53251084 (-)
G274344 LOC106586294 other upstream 3544457 54679918 ~ 54682805 (-)

Expression


Co-expression Network