LOC110520163 (LOC106586270)


Basic Information

Item Value
gene id LOC110520163
gene name LOC106586270
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51228485 ~ 51230831 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597289.2
TTCACATGGAGCAGCCCGGAGTTATCAACCATTTGCGTAAACGCTGGATTCAAGTGCTGAGTGGCGGTTAACAGTCTCTGGCGATAGCAGCAAAACAAGATAAGAACTGCAGCTCTAGATATATTGCCTTCTGTCTTCGATGCTATTTTGTCCTCGTCGGATATCAACATGCATCAGAAAACCTAACTTTTATAGAGTTTCTCATCAGAACGCTGCGCATTGCTCTTTTCAAAACGGATATCTTACTACGGTGTGATGAAGCACTGATATTTTACACCAAAAGTATTTTGTACCAACATGTCTAAACCAATGGATCACGTAAAACGCCCGATGAATGCCTTCATGGTTTGGTCCAGAGCGCAGAGAAGAAAAATGGCTCAGGAGAACCCAAAAATGCACAACTCCGAGATCAGCAAAAGATTGGGAGCGGAGTGGAAACTTCTCACCGAGTCAGAGAAAAGGCCATTCATTGACGAAGCTAAACGACTGAGAGCCATGCACATGAAGGAACACCCTGACTATAAATACAGACCTAGGCGGAAGCCAAAGACTCTGATGAAAAAAGACAAGTTTGCCTTCCCAGTGCCCTACAATCTTGGAGAGCACGACGCGCTTAAAGTTAGCGGTCTATCTCATGGAGCACTTCACGAGTCCCTATTAGGGAACCCAGACAAGGCAGCAGCGGCAGCGGCGGCCGCAGCAGCGAGAGTCTTCTTCAACCCGTCCATGACCACGAACCCCTATTCATTTTTTGACCTCGGGTCGAAGATGTCAGAGCTTTCCTCTCCATCGTTTCCTTACCCATCTCTGGGGTACCCTGGTGGCACGGCTTTCTCTGGAACTGGTAGTGTTGGtggaacacacactcacactcactctcatCCAGCCCCGGGCAACCCAGGCTACATGATCCCCTGTAACTGTACGGGCTGGCCCTCTGCGGGTCTTCAGCCACCGCTAGCCTACATCCTGCTGCCTGGCATGGGCAAACCTCAACTTGACTACCCTGCATATGCAGCGGCATTATGATAGCCTATATTGGATTTAGGAGACGtttaaatgtgaagaaaaaaatattCATGCAAGAGTTTATTATGCATGCACAAACTTGTACATGTGATGAAGTGCTCGTTGTCTCAGATATCACATGTGTATGTATATTGATTAATGCCTTTATCGAAGGTAATTCTTATATAGCGAACTCTCTAAACTAATATTCATACATCTCCGGGCAAATCCCAGAGGGACAGAACAAAAGGATGGCAGAAATACTGAACTGGGGAGGAAAGGGTAGGAGATCTATTTGCCCGTGTCAATGTGAATACTCATTTGAAAGGTACCATATTTGATTTATATCTGTTGCAAATGCACCTGCTTGACTTGTTGTTATCAAGTAGGCCTAGTTTACTGCATCCCACAACAAATCAGATATAGGTAAACATGAACTGGCCATAACTTTCTTCATATATTGTACCTGATAATTCAATATTGTTTAAAGAGTCTAATCACTGGCTATTATGATTTATATTGTTGGTCAAGAAGGAATGATAATTGTTTGTCCGTCTGGCTTTCTTGTTTCAATCAGAATGACATAAGCCTGTAAATGTGTACAGATAAATGATGCTAATAGTTAATTTGCCATTAGGCTAGTGCTTGAGATAGGGCCTGGAACTGACTGGGTTGTTTGATTAGAAATCCAGTGTATATTTTGAGTTTTTAAACACTGTTTTATAGATGTCTGTACTATTTATTGTTTAGTGGAATGATTATGGTGACCCTGTCGATTGAACAGAGGACATACCCTGTCCTGTAACATTTGCACAGTAAATAGGAAGTGCTTATATAATGTAATTTATTTTAAAGAATGACGAGCCCAAAAGTTTTTTAATTCGACTACAATCGTTCGCCTTTCTGTCAACATTGGCAAGACACAAAATTATCACTGATCATTTTTGATTCTTGAGACTTGTGCATTTACGTGCATAAGGAGCATCATTCGTTTTTACTAACTCTTAATGAAGTTGTCTGTTTTGTGTTTTATTTAACACCACTTACATGTACTTTAAACTCTTAAATGCTATTCTTTTCATTTGTTGAACAAAGGATTATAATAAAGCGTATGCGGACAAACAGAAAGAATC

Function

NR:

description
PREDICTED: transcription factor Sox-21-B

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process

KEGG:

id description
K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597289.2 True 2141 mRNA 0.42 2 51228485 51230831

Neighbor

gene id symbol gene type direction distance location
LOC110520162 LOC106586269 coding upstream 28724 51148544 ~ 51199761 (+)
uggt2 LOC106586268 coding upstream 118210 51065174 ~ 51110275 (+)
LOC110520157 LOC106586094 coding upstream 269040 50958014 ~ 50959445 (+)
LOC110520146 ino80d coding upstream 609724 50601983 ~ 50618761 (+)
LOC110520148 LOC106586260 coding upstream 626830 50595616 ~ 50601655 (+)
LOC110520164 LOC100137092 coding downstream 27961 51258792 ~ 51262216 (+)
LOC110520165 LOC106586271 coding downstream 36242 51267073 ~ 51276411 (+)
pdxka LOC106586273 coding downstream 259521 51490352 ~ 51500089 (+)
LOC110520168 LOC106586274 coding downstream 273690 51504521 ~ 51532634 (+)
LOC110520169 il1rl1 coding downstream 343174 51573980 ~ 51582567 (+)
G269444 NA non-coding upstream 91990 51136248 ~ 51136495 (+)
G269436 NA non-coding upstream 104490 51098811 ~ 51123995 (+)
G269409 dnajc3 non-coding upstream 106773 51120566 ~ 51121712 (+)
G269385 NA non-coding upstream 208926 51019344 ~ 51019559 (+)
G269378 NA non-coding upstream 217467 51010755 ~ 51011018 (+)
G270279 NA non-coding downstream 184651 51415482 ~ 51415683 (+)
G270288 NA non-coding downstream 190343 51421174 ~ 51421663 (+)
G270289 NA non-coding downstream 191202 51422033 ~ 51422325 (+)
G270335 NA non-coding downstream 240772 51471603 ~ 51472132 (+)
G270336 NA non-coding downstream 241755 51472586 ~ 51472945 (+)
G269291 rap2a other upstream 328208 50898589 ~ 50900277 (+)
hoxd3a hoxd3 other upstream 1045459 50162278 ~ 50184327 (+)
G267529 NA other upstream 1372983 49836617 ~ 49855502 (+)
G267381 NA other upstream 1672647 49554498 ~ 49555838 (+)
acvr2aa LOC106586327 other downstream 1936121 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 other downstream 1990596 53174264 ~ 53235027 (+)
LOC110520190 LOC106586322 other downstream 2060499 53291284 ~ 53339392 (+)
G272965 NA other downstream 2417994 53648825 ~ 53652431 (+)

Expression


Co-expression Network